Gene annotation
Transcriptome id Sobic.003G100900.1
Synonym
Functional annotation -
UniProt A0A1B6Q2L6
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) Zm00025a023766
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G008900 - -
2 Sobic.002G252000 CHIT13 - Chitinase family protein precursor, expressed -
3 Sobic.002G365500 igA FC receptor precursor, putative, expressed -
4 Sobic.005G096101 - -
5 Sobic.002G368300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@COBRA-like protein precursor, putative, expressed -
6 Sobic.010G180100 transferase family protein, putative, expressed -
7 Sobic.004G071000 "affects cinnamyl alcohol dehydrogenase (CAD) activity, resulting in altered lignin composition"(PubMedID : 20585750)@the MYB transcription factor binding domain AACG element(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@"cinnamyl alcohol dehydrogenase, CAD2"(PubMedID : 19087955)@Brown midrib6 Gene(PubMedID : 19087955)@cinnamyl alcohol dehydrogenase(PubMedID : 19363091)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@"cinnamyl alcohol dehydrogenase 2, CAD2. homolog in maize Bm1."(PubMedID : 9675900)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
8 Sobic.002G311501 - -
9 Sobic.005G088300 expressed protein -
10 Sobic.006G282300 - -
11 Sobic.007G109600 expressed protein -
12 Sobic.009G215000 - -
13 Sobic.001G107100 "SRS5(Ortholog in rice:Segami, 2012)"(PubMedID : 31659833)@tubulin/FtsZ domain containing protein, putative, expressed K07374: tubulin alpha
14 Sobic.001G409100 glycosyltransferase family 43 protein, putative, expressed -
15 Sobic.002G338400 uncharacterized secreted protein, putative, expressed -
16 Sobic.010G096400 proteins of unknown function domain containing protein, expressed -
17 Sobic.002G365600 igA FC receptor precursor, putative, expressed -
18 Sobic.002G365550 - -
19 Sobic.009G122300 white-brown complex homolog protein 16, putative, expressed -
20 Sobic.002G365801 - -


Gene co-expression network
sample Sobic003G100900 Sobic003G100900 Sobic001G008900 Sobic001G008900 Sobic003G100900--Sobic001G008900 Sobic002G252000 Sobic002G252000 Sobic003G100900--Sobic002G252000 Sobic002G365500 Sobic002G365500 Sobic003G100900--Sobic002G365500 Sobic005G096101 Sobic005G096101 Sobic003G100900--Sobic005G096101 Sobic002G368300 Sobic002G368300 Sobic003G100900--Sobic002G368300 Sobic010G180100 Sobic010G180100 Sobic003G100900--Sobic010G180100 Sobic004G071000 Sobic004G071000 Sobic003G100900--Sobic004G071000 Sobic002G311501 Sobic002G311501 Sobic003G100900--Sobic002G311501 Sobic005G088300 Sobic005G088300 Sobic003G100900--Sobic005G088300 Sobic001G008900--Sobic003G100900 Sobic006G282300 Sobic006G282300 Sobic001G008900--Sobic006G282300 Sobic001G008900--Sobic010G180100 Sobic001G008900--Sobic005G096101 Sobic002G094600 Sobic002G094600 Sobic001G008900--Sobic002G094600 Sobic002G254900 Sobic002G254900 Sobic001G008900--Sobic002G254900 Sobic010G101900 Sobic010G101900 Sobic001G008900--Sobic010G101900 Sobic001G002800 Sobic001G002800 Sobic001G008900--Sobic001G002800 Sobic001G008900--Sobic002G252000 Sobic002G128800 Sobic002G128800 Sobic002G252000--Sobic002G128800 Sobic002G338400 Sobic002G338400 Sobic002G252000--Sobic002G338400 Sobic001G418100 Sobic001G418100 Sobic002G252000--Sobic001G418100 Sobic002G396400 Sobic002G396400 Sobic002G252000--Sobic002G396400 Sobic006G156000 Sobic006G156000 Sobic002G252000--Sobic006G156000 Sobic001G038300 Sobic001G038300 Sobic002G252000--Sobic001G038300 Sobic001G107100 Sobic001G107100 Sobic002G252000--Sobic001G107100 Sobic003G443300 Sobic003G443300 Sobic002G252000--Sobic003G443300 Sobic003G219800 Sobic003G219800 Sobic002G252000--Sobic003G219800 Sobic002G365550 Sobic002G365550 Sobic002G365500--Sobic002G365550 Sobic002G365600 Sobic002G365600 Sobic002G365500--Sobic002G365600 Sobic010G115700 Sobic010G115700 Sobic002G365500--Sobic010G115700 Sobic002G365801 Sobic002G365801 Sobic002G365500--Sobic002G365801 Sobic002G365500--Sobic004G071000 Sobic002G365500--Sobic002G368300 Sobic006G183900 Sobic006G183900 Sobic002G365500--Sobic006G183900 Sobic006G028400 Sobic006G028400 Sobic002G365500--Sobic006G028400 Sobic003G269500 Sobic003G269500 Sobic002G365500--Sobic003G269500 Sobic005G096101--Sobic001G008900 Sobic005G096101--Sobic002G311501 Sobic005G096101--Sobic006G282300 Sobic009G221900 Sobic009G221900 Sobic005G096101--Sobic009G221900 Sobic005G096101--Sobic002G365550 Sobic009G215000 Sobic009G215000 Sobic005G096101--Sobic009G215000 Sobic005G096101--Sobic004G071000 Sobic009G072800 Sobic009G072800 Sobic005G096101--Sobic009G072800 Sobic007G047300 Sobic007G047300 Sobic005G096101--Sobic007G047300 Sobic002G368300--Sobic002G365801 Sobic007G178900 Sobic007G178900 Sobic002G368300--Sobic007G178900 Sobic002G368300--Sobic004G071000 Sobic002G368300--Sobic002G365500 Sobic002G368300--Sobic002G365550 Sobic010G096400 Sobic010G096400 Sobic002G368300--Sobic010G096400 Sobic009G088900 Sobic009G088900 Sobic002G368300--Sobic009G088900 Sobic010G212500 Sobic010G212500 Sobic002G368300--Sobic010G212500 Sobic007G176000 Sobic007G176000 Sobic002G368300--Sobic007G176000 Sobic010G131400 Sobic010G131400 Sobic010G180100--Sobic010G131400 Sobic010G180100--Sobic002G254900 Sobic002G167600 Sobic002G167600 Sobic010G180100--Sobic002G167600 Sobic001G360700 Sobic001G360700 Sobic010G180100--Sobic001G360700 Sobic010G180100--Sobic001G002800 Sobic001G224300 Sobic001G224300 Sobic010G180100--Sobic001G224300 Sobic001G409100 Sobic001G409100 Sobic010G180100--Sobic001G409100 Sobic004G047600 Sobic004G047600 Sobic010G180100--Sobic004G047600 Sobic003G387500 Sobic003G387500 Sobic010G180100--Sobic003G387500 Sobic004G071000--Sobic002G365801 Sobic004G071000--Sobic002G365550 Sobic004G071000--Sobic002G368300 Sobic004G071000--Sobic002G365500 Sobic008G055100 Sobic008G055100 Sobic004G071000--Sobic008G055100 Sobic004G071000--Sobic010G115700 Sobic004G071000--Sobic010G212500 Sobic004G071000--Sobic002G365600 Sobic003G053400 Sobic003G053400 Sobic004G071000--Sobic003G053400 Sobic002G311501--Sobic002G365550 Sobic002G311501--Sobic002G365801 Sobic003G368100 Sobic003G368100 Sobic002G311501--Sobic003G368100 Sobic001G059500 Sobic001G059500 Sobic002G311501--Sobic001G059500 Sobic001G068500 Sobic001G068500 Sobic002G311501--Sobic001G068500 Sobic004G165300 Sobic004G165300 Sobic002G311501--Sobic004G165300 Sobic002G311501--Sobic010G096400 Sobic005G160700 Sobic005G160700 Sobic002G311501--Sobic005G160700 Sobic001G059600 Sobic001G059600 Sobic002G311501--Sobic001G059600 Sobic001G261460 Sobic001G261460 Sobic005G088300--Sobic001G261460 Sobic010G047600 Sobic010G047600 Sobic005G088300--Sobic010G047600 Sobic003G121000 Sobic003G121000 Sobic005G088300--Sobic003G121000 Sobic008G005100 Sobic008G005100 Sobic005G088300--Sobic008G005100 Sobic001G514200 Sobic001G514200 Sobic005G088300--Sobic001G514200 Sobic005G088300--Sobic008G055100 Sobic005G088300--Sobic010G096400 Sobic001G046800 Sobic001G046800 Sobic005G088300--Sobic001G046800 Sobic008G135300 Sobic008G135300 Sobic005G088300--Sobic008G135300
Octagon: transcription factors


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