Gene annotation
Transcriptome id Sobic.002G119900.2,Sobic.002G119900.1,Sobic.002G119900.5,Sobic.002G119900.4,Sobic.002G119900.3
Synonym Sb02g010230
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
dirigent, putative, expressed
UniProt C5X502
Pfam PF03018
Panther DB PTHR21495 PTHR21495:SF65
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G65870 : Disease resistance-responsive (dirigent-like protein) family protein
RAP-DB (Rice) LOC_Os11g07690.1 : dirigent, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU5Hr1G094710.1 , HORVU5Hr1G094740.1 , HORVU5Hr1G094740.3 , HORVU5Hr1G094740.2 , HORVU5Hr1G094700.1
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G119900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G002800 phospholipase C, putative, expressed -
2 Sobic.001G059700 LTPL73 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
3 Sobic.010G085800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@plastocyanin-like domain containing protein, putative, expressed -
4 Sobic.001G310300 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
5 Sobic.006G106100 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
6 Sobic.001G014000 P21-Rho-binding domain containing protein, putative, expressed -
7 Sobic.002G175100 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
8 Sobic.010G008400 bark storage protein A precursor, putative, expressed -
9 Sobic.001G444800 ubiquitin fusion protein, putative, expressed K02927: RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
10 Sobic.010G251600 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
11 Sobic.001G052000 aspartic proteinase nepenthesin-1 precursor, putative, expressed -
12 Sobic.007G159450 - -
13 Sobic.004G055100 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae
14 Sobic.004G331400 60S ribosomal protein L39, putative, expressed K02924: RP-L39e, large subunit ribosomal protein L39e
15 Sobic.009G088900 membrane associated DUF588 domain containing protein, putative, expressed -
16 Sobic.001G493001 - K02979: RP-S28e, small subunit ribosomal protein S28e
17 Sobic.001G086300 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
18 Sobic.001G130301 - K02971: RP-S21e, small subunit ribosomal protein S21e
19 Sobic.003G254300 peroxiredoxin, putative, expressed -
20 Sobic.004G216300 - -


Gene co-expression network
sample Sobic002G119900 Sobic002G119900 Sobic007G002800 Sobic007G002800 Sobic002G119900--Sobic007G002800 Sobic001G059700 Sobic001G059700 Sobic002G119900--Sobic001G059700 Sobic010G085800 Sobic010G085800 Sobic002G119900--Sobic010G085800 Sobic001G310300 Sobic001G310300 Sobic002G119900--Sobic001G310300 Sobic006G106100 Sobic006G106100 Sobic002G119900--Sobic006G106100 Sobic001G014000 Sobic001G014000 Sobic002G119900--Sobic001G014000 Sobic002G175100 Sobic002G175100 Sobic002G119900--Sobic002G175100 Sobic010G008400 Sobic010G008400 Sobic002G119900--Sobic010G008400 Sobic001G444800 Sobic001G444800 Sobic002G119900--Sobic001G444800 Sobic004G055100 Sobic004G055100 Sobic007G002800--Sobic004G055100 Sobic007G002800--Sobic002G175100 Sobic004G331400 Sobic004G331400 Sobic007G002800--Sobic004G331400 Sobic009G054800 Sobic009G054800 Sobic007G002800--Sobic009G054800 Sobic006G103000 Sobic006G103000 Sobic007G002800--Sobic006G103000 Sobic007G002800--Sobic010G085800 Sobic002G255300 Sobic002G255300 Sobic007G002800--Sobic002G255300 Sobic007G002800--Sobic001G310300 Sobic003G436700 Sobic003G436700 Sobic007G002800--Sobic003G436700 Sobic001G059700--Sobic010G085800 Sobic009G088900 Sobic009G088900 Sobic001G059700--Sobic009G088900 Sobic007G159450 Sobic007G159450 Sobic001G059700--Sobic007G159450 Sobic001G238400 Sobic001G238400 Sobic001G059700--Sobic001G238400 Sobic004G318700 Sobic004G318700 Sobic001G059700--Sobic004G318700 Sobic001G059700--Sobic001G310300 Sobic003G053400 Sobic003G053400 Sobic001G059700--Sobic003G053400 Sobic004G297900 Sobic004G297900 Sobic001G059700--Sobic004G297900 Sobic008G005100 Sobic008G005100 Sobic001G059700--Sobic008G005100 Sobic010G085800--Sobic001G059700 Sobic010G085800--Sobic001G310300 Sobic010G085800--Sobic010G008400 Sobic009G109000 Sobic009G109000 Sobic010G085800--Sobic009G109000 Sobic010G085800--Sobic004G297900 Sobic008G009400 Sobic008G009400 Sobic010G085800--Sobic008G009400 Sobic010G085800--Sobic009G088900 Sobic003G311800 Sobic003G311800 Sobic010G085800--Sobic003G311800 Sobic007G218800 Sobic007G218800 Sobic010G085800--Sobic007G218800 Sobic006G203700 Sobic006G203700 Sobic001G310300--Sobic006G203700 Sobic001G310300--Sobic010G085800 Sobic001G514200 Sobic001G514200 Sobic001G310300--Sobic001G514200 Sobic008G055100 Sobic008G055100 Sobic001G310300--Sobic008G055100 Sobic001G481000 Sobic001G481000 Sobic001G310300--Sobic001G481000 Sobic001G310300--Sobic009G109000 Sobic001G310300--Sobic010G008400 Sobic001G310300--Sobic008G005100 Sobic003G160700 Sobic003G160700 Sobic001G310300--Sobic003G160700 Sobic001G091801 Sobic001G091801 Sobic006G106100--Sobic001G091801 Sobic007G019400 Sobic007G019400 Sobic006G106100--Sobic007G019400 Sobic001G376600 Sobic001G376600 Sobic006G106100--Sobic001G376600 Sobic010G206200 Sobic010G206200 Sobic006G106100--Sobic010G206200 Sobic010G251600 Sobic010G251600 Sobic006G106100--Sobic010G251600 Sobic004G280700 Sobic004G280700 Sobic006G106100--Sobic004G280700 Sobic006G106100--Sobic002G175100 Sobic006G106100--Sobic004G331400 Sobic001G054900 Sobic001G054900 Sobic006G106100--Sobic001G054900 Sobic001G014000--Sobic003G436700 Sobic003G062600 Sobic003G062600 Sobic001G014000--Sobic003G062600 Sobic004G046200 Sobic004G046200 Sobic001G014000--Sobic004G046200 Sobic006G044100 Sobic006G044100 Sobic001G014000--Sobic006G044100 Sobic003G418766 Sobic003G418766 Sobic001G014000--Sobic003G418766 Sobic008G106700 Sobic008G106700 Sobic001G014000--Sobic008G106700 Sobic006G136800 Sobic006G136800 Sobic001G014000--Sobic006G136800 Sobic010G063801 Sobic010G063801 Sobic001G014000--Sobic010G063801 Sobic009G105700 Sobic009G105700 Sobic001G014000--Sobic009G105700 Sobic002G175100--Sobic004G331400 Sobic001G374700 Sobic001G374700 Sobic002G175100--Sobic001G374700 Sobic009G215200 Sobic009G215200 Sobic002G175100--Sobic009G215200 Sobic006G116700 Sobic006G116700 Sobic002G175100--Sobic006G116700 Sobic002G175100--Sobic001G091801 Sobic006G047400 Sobic006G047400 Sobic002G175100--Sobic006G047400 Sobic009G050300 Sobic009G050300 Sobic002G175100--Sobic009G050300 Sobic002G081600 Sobic002G081600 Sobic002G175100--Sobic002G081600 Sobic003G346600 Sobic003G346600 Sobic002G175100--Sobic003G346600 Sobic002G176100 Sobic002G176100 Sobic010G008400--Sobic002G176100 Sobic002G003800 Sobic002G003800 Sobic010G008400--Sobic002G003800 Sobic003G319500 Sobic003G319500 Sobic010G008400--Sobic003G319500 Sobic002G327300 Sobic002G327300 Sobic010G008400--Sobic002G327300 Sobic010G008400--Sobic004G046200 Sobic001G500000 Sobic001G500000 Sobic010G008400--Sobic001G500000 Sobic010G008400--Sobic010G085800 Sobic002G017800 Sobic002G017800 Sobic010G008400--Sobic002G017800 Sobic009G111000 Sobic009G111000 Sobic010G008400--Sobic009G111000 Sobic003G363800 Sobic003G363800 Sobic001G444800--Sobic003G363800 Sobic001G085400 Sobic001G085400 Sobic001G444800--Sobic001G085400 Sobic009G076400 Sobic009G076400 Sobic001G444800--Sobic009G076400 Sobic003G249700 Sobic003G249700 Sobic001G444800--Sobic003G249700 Sobic003G387900 Sobic003G387900 Sobic001G444800--Sobic003G387900 Sobic001G444800--Sobic007G019400 Sobic001G444800--Sobic002G255300 Sobic007G178600 Sobic007G178600 Sobic001G444800--Sobic007G178600 Sobic009G227400 Sobic009G227400 Sobic001G444800--Sobic009G227400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.