Gene annotation
Transcriptome id Sobic.003G203500.2,Sobic.003G203500.1
Synonym REF1, ALDH2C4, ALDH1A, CCR;CCR, Sb03g026550
Functional annotation "cinnamoyl-CoA reductase, the MYB transcription factor binding domain AACG element" (PubMedID : 24045932)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
aldehyde dehydrogenase, putative, expressed
UniProt A0A1B6Q4G0 , A0A1B6Q4H1
Pfam PF00171
Panther DB PTHR11699 PTHR11699:SF182
NCBI CDD -
KEGG Orthology K12355; coniferyl-aldehyde dehydrogenase
Gene Ontology GO:0016491; oxidoreductase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT3G24503 : aldehyde dehydrogenase 2C4
RAP-DB (Rice) LOC_Os01g40860.1 : aldehyde dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a038433 , Zm00025a042275 , Zm00025a028546 , Zm00025a028547
Brachypodium KQK08538 , KQK08540 , KQK08537 , PNT72304 , PNT72303
Barley HORVU1Hr1G068020.3 , HORVU1Hr1G068020.2 , HORVU1Hr1G068020.1 , HORVU1Hr1G068020.7 , HORVU1Hr1G068020.6 , HORVU1Hr1G068020.5 , HORVU1Hr1G068020.4 , HORVU3Hr1G092680.8 , HORVU3Hr1G092680.9 , HORVU3Hr1G092680.4 , HORVU3Hr1G092680.5 , HORVU3Hr1G092680.6 , HORVU3Hr1G092680.7 , HORVU3Hr1G092680.1 , HORVU3Hr1G092680.2 , HORVU3Hr1G092680.3 , HORVU0Hr1G031700.1 , HORVU0Hr1G031700.3 , HORVU0Hr1G031700.2 , HORVU0Hr1G031700.5 , HORVU0Hr1G031700.4 , HORVU0Hr1G028680.2 , HORVU0Hr1G028680.3 , HORVU0Hr1G028680.1 , HORVU0Hr1G028680.6 , HORVU0Hr1G028680.7 , HORVU0Hr1G028680.4 , HORVU0Hr1G028680.5 , HORVU3Hr1G092680.10 , HORVU3Hr1G092680.11
Wheat TraesCS3A02G212300 , TraesCS3B02G452100 , TraesCS1A02G310600 , TraesCS1D02G310100 , TraesCS3A02G417200 , TraesCS3A02G417200 , TraesCS3D02G412700 , TraesCS3D02G412700 , TraesCS1B02G321900 , TraesCS1B02G321900
Populus -


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cDNA sequences
Sobic.003G203500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G230100 3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
2 Sobic.003G244200 vacuolar ATP synthase subunit E, putative, expressed K02150: ATPeV1E, V-type H+-transporting ATPase subunit E
3 Sobic.001G338400 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
4 Sobic.001G110400 - -
5 Sobic.001G512000 cyclin-dependent kinase inhibitor, putative, expressed -
6 Sobic.003G254700 glycosyltransferase family 43 protein, putative, expressed -
7 Sobic.009G229300 glycosyltransferase family 43 protein, putative, expressed -
8 Sobic.005G133900 TPR repeat region family protein, expressed -
9 Sobic.009G179200 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
10 Sobic.007G132700 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM motif family protein, expressed K13464: jasmonate ZIM domain-containing protein
11 Sobic.002G363100 eukaryotic translation initiation factor 5A, putative, expressed K03263: translation initiation factor 5A
12 Sobic.003G348800 NAD dependent epimerase/dehydratase family domain containing protein, expressed K08678: UXS1, UDP-glucuronate decarboxylase
13 Sobic.008G178800 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed K00549: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
14 Sobic.006G064800 heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed -
15 Sobic.010G094600 zinc finger, C3HC4 type, domain containing protein, expressed -
16 Sobic.008G088830 - -
17 Sobic.010G067500 OsSCP32 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
18 Sobic.009G215000 - -
19 Sobic.006G002700 OsRhmbd10 - Putative Rhomboid homologue, expressed -
20 Sobic.001G007600 GTPase-activating protein, putative, expressed K12493: ADP-ribosylation factor GTPase-activating protein 2/3


Gene co-expression network
sample Sobic003G203500 Sobic003G203500 Sobic001G230100 Sobic001G230100 Sobic003G203500--Sobic001G230100 Sobic003G244200 Sobic003G244200 Sobic003G203500--Sobic003G244200 Sobic001G338400 Sobic001G338400 Sobic003G203500--Sobic001G338400 Sobic001G110400 Sobic001G110400 Sobic003G203500--Sobic001G110400 Sobic001G512000 Sobic001G512000 Sobic003G203500--Sobic001G512000 Sobic003G254700 Sobic003G254700 Sobic003G203500--Sobic003G254700 Sobic009G229300 Sobic009G229300 Sobic003G203500--Sobic009G229300 Sobic005G133900 Sobic005G133900 Sobic003G203500--Sobic005G133900 Sobic009G179200 Sobic009G179200 Sobic003G203500--Sobic009G179200 Sobic001G230100--Sobic001G338400 Sobic001G230100--Sobic001G110400 Sobic003G348800 Sobic003G348800 Sobic001G230100--Sobic003G348800 Sobic001G007600 Sobic001G007600 Sobic001G230100--Sobic001G007600 Sobic008G088830 Sobic008G088830 Sobic001G230100--Sobic008G088830 Sobic001G230100--Sobic009G229300 Sobic001G281900 Sobic001G281900 Sobic001G230100--Sobic001G281900 Sobic009G104000 Sobic009G104000 Sobic001G230100--Sobic009G104000 Sobic004G082900 Sobic004G082900 Sobic001G230100--Sobic004G082900 Sobic006G002201 Sobic006G002201 Sobic003G244200--Sobic006G002201 Sobic009G093200 Sobic009G093200 Sobic003G244200--Sobic009G093200 Sobic003G244200--Sobic005G133900 Sobic007G161200 Sobic007G161200 Sobic003G244200--Sobic007G161200 Sobic003G216500 Sobic003G216500 Sobic003G244200--Sobic003G216500 Sobic002G363100 Sobic002G363100 Sobic003G244200--Sobic002G363100 Sobic004G099900 Sobic004G099900 Sobic003G244200--Sobic004G099900 Sobic010G180400 Sobic010G180400 Sobic003G244200--Sobic010G180400 Sobic003G244200--Sobic004G082900 Sobic001G338400--Sobic003G348800 Sobic008G150300 Sobic008G150300 Sobic001G338400--Sobic008G150300 Sobic001G338400--Sobic001G281900 Sobic001G145500 Sobic001G145500 Sobic001G338400--Sobic001G145500 Sobic004G010900 Sobic004G010900 Sobic001G338400--Sobic004G010900 Sobic001G490500 Sobic001G490500 Sobic001G338400--Sobic001G490500 Sobic001G338400--Sobic001G230100 Sobic002G342500 Sobic002G342500 Sobic001G338400--Sobic002G342500 Sobic006G029000 Sobic006G029000 Sobic001G338400--Sobic006G029000 Sobic006G002700 Sobic006G002700 Sobic001G110400--Sobic006G002700 Sobic001G110400--Sobic001G230100 Sobic001G110400--Sobic001G007600 Sobic001G110400--Sobic009G104000 Sobic006G252200 Sobic006G252200 Sobic001G110400--Sobic006G252200 Sobic010G038700 Sobic010G038700 Sobic001G110400--Sobic010G038700 Sobic004G224900 Sobic004G224900 Sobic001G110400--Sobic004G224900 Sobic001G005900 Sobic001G005900 Sobic001G110400--Sobic001G005900 Sobic001G021300 Sobic001G021300 Sobic001G110400--Sobic001G021300 Sobic001G512000--Sobic009G229300 Sobic004G051300 Sobic004G051300 Sobic001G512000--Sobic004G051300 Sobic001G112700 Sobic001G112700 Sobic001G512000--Sobic001G112700 Sobic005G017300 Sobic005G017300 Sobic001G512000--Sobic005G017300 Sobic004G272200 Sobic004G272200 Sobic001G512000--Sobic004G272200 Sobic001G512000--Sobic001G230100 Sobic009G026200 Sobic009G026200 Sobic001G512000--Sobic009G026200 Sobic004G134100 Sobic004G134100 Sobic001G512000--Sobic004G134100 Sobic001G512000--Sobic001G007600 Sobic004G111100 Sobic004G111100 Sobic003G254700--Sobic004G111100 Sobic004G007600 Sobic004G007600 Sobic003G254700--Sobic004G007600 Sobic001G133900 Sobic001G133900 Sobic003G254700--Sobic001G133900 Sobic009G026101 Sobic009G026101 Sobic003G254700--Sobic009G026101 Sobic001G072600 Sobic001G072600 Sobic003G254700--Sobic001G072600 Sobic009G246700 Sobic009G246700 Sobic003G254700--Sobic009G246700 Sobic009G125900 Sobic009G125900 Sobic003G254700--Sobic009G125900 Sobic002G075500 Sobic002G075500 Sobic003G254700--Sobic002G075500 Sobic002G218900 Sobic002G218900 Sobic003G254700--Sobic002G218900 Sobic008G003600 Sobic008G003600 Sobic009G229300--Sobic008G003600 Sobic009G229300--Sobic001G512000 Sobic009G229300--Sobic001G230100 Sobic003G052400 Sobic003G052400 Sobic009G229300--Sobic003G052400 Sobic010G105600 Sobic010G105600 Sobic009G229300--Sobic010G105600 Sobic001G237500 Sobic001G237500 Sobic009G229300--Sobic001G237500 Sobic002G131900 Sobic002G131900 Sobic009G229300--Sobic002G131900 Sobic004G337900 Sobic004G337900 Sobic009G229300--Sobic004G337900 Sobic002G362900 Sobic002G362900 Sobic009G229300--Sobic002G362900 Sobic005G133900--Sobic002G363100 Sobic004G057200 Sobic004G057200 Sobic005G133900--Sobic004G057200 Sobic005G133900--Sobic003G244200 Sobic001G357300 Sobic001G357300 Sobic005G133900--Sobic001G357300 Sobic005G133900--Sobic009G093200 Sobic005G133900--Sobic003G216500 Sobic002G133800 Sobic002G133800 Sobic005G133900--Sobic002G133800 Sobic005G133900--Sobic006G002201 Sobic009G240900 Sobic009G240900 Sobic005G133900--Sobic009G240900 Sobic001G049200 Sobic001G049200 Sobic009G179200--Sobic001G049200 Sobic002G294200 Sobic002G294200 Sobic009G179200--Sobic002G294200 Sobic001G403700 Sobic001G403700 Sobic009G179200--Sobic001G403700 Sobic003G261400 Sobic003G261400 Sobic009G179200--Sobic003G261400 Sobic002G242500 Sobic002G242500 Sobic009G179200--Sobic002G242500 Sobic004G130900 Sobic004G130900 Sobic009G179200--Sobic004G130900 Sobic007G132700 Sobic007G132700 Sobic009G179200--Sobic007G132700 Sobic001G078800 Sobic001G078800 Sobic009G179200--Sobic001G078800 Sobic010G062800 Sobic010G062800 Sobic009G179200--Sobic010G062800
Octagon: transcription factors


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