Gene annotation
Transcriptome id Sobic.003G216232.1
Synonym -
Functional annotation -
UniProt A0A1W0VYE3 , A0A1B6Q4K9
Pfam PF14510 PF08370 PF00005 PF01061
Panther DB PTHR19241 PTHR19241:SF273
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT1G15520 : pleiotropic drug resistance 12
RAP-DB (Rice) LOC_Os01g42380.1 : pleiotropic drug resistance protein, putative, expressed
MaizeGDB (Corn) Zm00025a028685 , Zm00025a028684 , Zm00025a038481 , Zm00025a038480 , Zm00025a034596
Brachypodium PNT72368 , PNT75619 , PNT75618 , PNT75624 , PNT75622 , PNT75623 , PNT75620 , PNT75621 , KQJ89875 , KQJ89876 , KQK08666
Barley HORVU3Hr1G053350.9 , HORVU3Hr1G053350.8 , HORVU4Hr1G017090.1 , HORVU7Hr1G092510.23 , HORVU7Hr1G092510.22 , HORVU7Hr1G092510.21 , HORVU7Hr1G092510.27 , HORVU7Hr1G092510.26 , HORVU7Hr1G092510.25 , HORVU7Hr1G092510.24 , HORVU7Hr1G092510.29 , HORVU7Hr1G092510.28 , HORVU7Hr1G092380.51 , HORVU7Hr1G092380.50 , HORVU7Hr1G092380.53 , HORVU7Hr1G092380.54 , HORVU7Hr1G092510.30 , HORVU7Hr1G092510.31 , HORVU7Hr1G092510.32 , HORVU7Hr1G092510.33 , HORVU7Hr1G092510.34 , HORVU7Hr1G092510.35 , HORVU7Hr1G092510.36 , HORVU7Hr1G092510.37 , HORVU7Hr1G092510.38 , HORVU7Hr1G092510.39 , HORVU7Hr1G092380.46 , HORVU7Hr1G092380.44 , HORVU7Hr1G092380.45 , HORVU7Hr1G092380.42 , HORVU7Hr1G092380.48 , HORVU7Hr1G092380.49 , HORVU7Hr1G092510.18 , HORVU7Hr1G092510.12 , HORVU7Hr1G092510.13 , HORVU7Hr1G092510.10 , HORVU7Hr1G092510.16 , HORVU7Hr1G092510.17 , HORVU7Hr1G092510.15 , HORVU7Hr1G092380.12 , HORVU7Hr1G092380.19 , HORVU7Hr1G092380.18 , HORVU7Hr1G092380.40 , HORVU7Hr1G092380.47 , HORVU7Hr1G092380.43 , HORVU7Hr1G092380.5 , HORVU7Hr1G092380.7 , HORVU7Hr1G092380.6 , HORVU7Hr1G092380.9 , HORVU7Hr1G092380.8 , HORVU7Hr1G092380.41 , HORVU5Hr1G056280.11 , HORVU5Hr1G056280.12 , HORVU5Hr1G056280.13 , HORVU5Hr1G056280.14 , HORVU5Hr1G056280.15 , HORVU7Hr1G092510.41 , HORVU7Hr1G092510.40 , HORVU7Hr1G092510.43 , HORVU7Hr1G092510.42 , HORVU7Hr1G092510.44 , HORVU7Hr1G092510.47 , HORVU7Hr1G092510.46 , HORVU3Hr1G053350.28 , HORVU3Hr1G053350.29 , HORVU3Hr1G053350.26 , HORVU3Hr1G053350.27 , HORVU5Hr1G056280.24 , HORVU5Hr1G056280.27 , HORVU5Hr1G056280.26 , HORVU5Hr1G056280.21 , HORVU5Hr1G056280.20 , HORVU5Hr1G056280.29 , HORVU3Hr1G053350.40 , HORVU5Hr1G056280.38 , HORVU5Hr1G056280.39 , HORVU5Hr1G056280.30 , HORVU5Hr1G056280.31 , HORVU5Hr1G056280.36 , HORVU5Hr1G056280.37 , HORVU5Hr1G056280.35 , HORVU3Hr1G053350.39 , HORVU3Hr1G053350.38 , HORVU3Hr1G053350.36 , HORVU3Hr1G053350.35 , HORVU3Hr1G053350.34 , HORVU3Hr1G053350.33 , HORVU3Hr1G053350.32 , HORVU3Hr1G053350.31 , HORVU3Hr1G053350.30 , HORVU5Hr1G056280.43 , HORVU7Hr1G092380.3 , HORVU7Hr1G092380.2 , HORVU7Hr1G092380.33 , HORVU7Hr1G092380.32 , HORVU7Hr1G092380.31 , HORVU7Hr1G092380.30 , HORVU7Hr1G092380.37 , HORVU7Hr1G092380.36 , HORVU7Hr1G092380.35 , HORVU7Hr1G092380.34 , HORVU3Hr1G053350.25 , HORVU7Hr1G092380.39 , HORVU7Hr1G092380.38 , HORVU3Hr1G053350.20 , HORVU3Hr1G053350.21 , HORVU3Hr1G053350.22 , HORVU3Hr1G053350.23 , HORVU3Hr1G053350.11 , HORVU3Hr1G053350.10 , HORVU3Hr1G053350.13 , HORVU3Hr1G053350.12 , HORVU3Hr1G053350.15 , HORVU3Hr1G053350.14 , HORVU3Hr1G053350.17 , HORVU3Hr1G053350.16 , HORVU3Hr1G053350.19 , HORVU3Hr1G053350.18 , HORVU7Hr1G092380.20 , HORVU7Hr1G092380.21 , HORVU7Hr1G092380.24 , HORVU7Hr1G092380.25 , HORVU7Hr1G092380.26 , HORVU3Hr1G053350.5 , HORVU3Hr1G053350.4 , HORVU3Hr1G053350.7 , HORVU3Hr1G053350.6 , HORVU3Hr1G053350.1 , HORVU3Hr1G053350.3 , HORVU3Hr1G053350.2 , HORVU7Hr1G092380.15 , HORVU7Hr1G092380.14 , HORVU7Hr1G092380.17 , HORVU7Hr1G092380.16 , HORVU7Hr1G092380.11 , HORVU7Hr1G092380.10 , HORVU7Hr1G092380.13 , HORVU5Hr1G056280.6 , HORVU5Hr1G056280.7 , HORVU5Hr1G056280.8 , HORVU7Hr1G092510.1 , HORVU7Hr1G092510.2 , HORVU7Hr1G092510.3 , HORVU7Hr1G092510.4 , HORVU7Hr1G092510.5 , HORVU7Hr1G092510.6 , HORVU7Hr1G092510.7 , HORVU7Hr1G092510.8 , HORVU7Hr1G092510.9 , HORVU3Hr1G105140.4 , HORVU3Hr1G105140.6 , HORVU3Hr1G105140.1 , HORVU3Hr1G105140.2 , HORVU3Hr1G105140.3 , HORVU3Hr1G105140.8 , HORVU7Hr1G092380.28 , HORVU7Hr1G092380.29
Wheat TraesCS2D02G130000 , TraesCS2A02G127800 , TraesCS7B02G292700 , TraesCS7B02G292700 , TraesCS5B02G183500 , TraesCS5B02G183500 , TraesCS5B02G183500 , TraesCS5B02G183500 , TraesCS2A02G483300 , TraesCS7A02G391100 , TraesCS7A02G391100 , TraesCS5D02G190600 , TraesCS5D02G190600 , TraesCS5D02G190600 , TraesCS3B02G248400 , TraesCS6A02G178500 , TraesCS6D02G166100 , TraesCS3A02G217900 , TraesCS3B02G524400 , TraesCS5A02G185500 , TraesCS5A02G185500 , TraesCS3D02G234400 , TraesCS6B02G205900 , TraesCS2B02G606700 , TraesCS2B02G606700
Populus PNT46280 , PNT46279


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G348400 ankyrin repeat-containing protein, putative, expressed -
2 Sobic.001G074200 LRR receptor-like protein kinase, putative, expressed -
3 Sobic.007G125900 protein kinase domain containing protein, expressed -
4 Sobic.003G338400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase NAK, putative, expressed -
5 Sobic.005G117400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transcription factor(PubMedID : 30367619)@WRKY72, expressed -
6 Sobic.008G189200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
7 Sobic.005G217200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
8 Sobic.005G136300 chalcone synthase(PubMedID : 26317421)@only inducible by pathogen inoculation(PubMedID : 20529887)@SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes.(PubMedID : 15821144)@chalcone synthase, putative, expressed K00660: chalcone synthase
9 Sobic.001G151800 expressed protein K16275: BAH, E3 ubiquitin-protein ligase BAH
10 Sobic.005G016800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CRP11 - Cysteine-rich family protein precursor, expressed -
11 Sobic.003G232900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@anthocyanin 3-O-beta-glucosyltransferase, putative, expressed -
12 Sobic.004G236600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsFBK10 - F-box domain and kelch repeat containing protein, expressed -
13 Sobic.009G079300 receptor protein kinase-like, putative, expressed -
14 Sobic.002G000400 "A single-copy gene, share a similar catalytic mechanism with the licorice and Medicago truncatula FNSIIs (CYP93B subfamily) by converting flavanones to flavone through the formation of 2-hydroxyflavanones, CYP93B subfamily"(PubMedID : 20007684)@enzyme relate to flavone pathway(PubMedID : 27917182)@cytochrome P450, putative, expressed -
15 Sobic.005G215900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
16 Sobic.009G236200 lectin-like receptor kinase 7, putative, expressed -
17 Sobic.010G210200 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
18 Sobic.006G002600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyltransferase family 43 protein, putative, expressed -
19 Sobic.004G236000 laccase precursor protein, putative, expressed K05909: laccase
20 Sobic.002G355200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@BTBN16 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed -


Gene co-expression network
sample Sobic003G216232 Sobic003G216232 Sobic003G348400 Sobic003G348400 Sobic003G216232--Sobic003G348400 Sobic001G074200 Sobic001G074200 Sobic003G216232--Sobic001G074200 Sobic007G125900 Sobic007G125900 Sobic003G216232--Sobic007G125900 Sobic003G338400 Sobic003G338400 Sobic003G216232--Sobic003G338400 Sobic005G117400 Sobic005G117400 Sobic003G216232--Sobic005G117400 Sobic008G189200 Sobic008G189200 Sobic003G216232--Sobic008G189200 Sobic005G217200 Sobic005G217200 Sobic003G216232--Sobic005G217200 Sobic005G136300 Sobic005G136300 Sobic003G216232--Sobic005G136300 Sobic001G151800 Sobic001G151800 Sobic003G216232--Sobic001G151800 Sobic003G348400--Sobic007G125900 Sobic003G348400--Sobic005G117400 Sobic003G348400--Sobic001G151800 Sobic003G348400--Sobic003G338400 Sobic004G102400 Sobic004G102400 Sobic003G348400--Sobic004G102400 Sobic006G140000 Sobic006G140000 Sobic003G348400--Sobic006G140000 Sobic006G091100 Sobic006G091100 Sobic003G348400--Sobic006G091100 Sobic005G212700 Sobic005G212700 Sobic003G348400--Sobic005G212700 Sobic001G003000 Sobic001G003000 Sobic003G348400--Sobic001G003000 Sobic009G127000 Sobic009G127000 Sobic001G074200--Sobic009G127000 Sobic001G074200--Sobic007G125900 Sobic008G115500 Sobic008G115500 Sobic001G074200--Sobic008G115500 Sobic002G379866 Sobic002G379866 Sobic001G074200--Sobic002G379866 Sobic001G147200 Sobic001G147200 Sobic001G074200--Sobic001G147200 Sobic001G157200 Sobic001G157200 Sobic001G074200--Sobic001G157200 Sobic001G074200--Sobic005G117400 Sobic002G118600 Sobic002G118600 Sobic001G074200--Sobic002G118600 Sobic010G228000 Sobic010G228000 Sobic001G074200--Sobic010G228000 Sobic007G125900--Sobic003G348400 Sobic007G125900--Sobic005G117400 Sobic007G125900--Sobic001G151800 Sobic007G125900--Sobic001G074200 Sobic009G236200 Sobic009G236200 Sobic007G125900--Sobic009G236200 Sobic002G355200 Sobic002G355200 Sobic007G125900--Sobic002G355200 Sobic005G016800 Sobic005G016800 Sobic007G125900--Sobic005G016800 Sobic007G125900--Sobic004G102400 Sobic007G125900--Sobic009G127000 Sobic003G338400--Sobic004G102400 Sobic003G338400--Sobic003G348400 Sobic004G341200 Sobic004G341200 Sobic003G338400--Sobic004G341200 Sobic009G167700 Sobic009G167700 Sobic003G338400--Sobic009G167700 Sobic010G016400 Sobic010G016400 Sobic003G338400--Sobic010G016400 Sobic003G338400--Sobic001G003000 Sobic001G158500 Sobic001G158500 Sobic003G338400--Sobic001G158500 Sobic003G338400--Sobic006G140000 Sobic001G089800 Sobic001G089800 Sobic003G338400--Sobic001G089800 Sobic004G158901 Sobic004G158901 Sobic005G117400--Sobic004G158901 Sobic005G117400--Sobic007G125900 Sobic004G058000 Sobic004G058000 Sobic005G117400--Sobic004G058000 Sobic002G249000 Sobic002G249000 Sobic005G117400--Sobic002G249000 Sobic005G117400--Sobic003G348400 Sobic004G050000 Sobic004G050000 Sobic005G117400--Sobic004G050000 Sobic003G232900 Sobic003G232900 Sobic005G117400--Sobic003G232900 Sobic007G025700 Sobic007G025700 Sobic005G117400--Sobic007G025700 Sobic010G224200 Sobic010G224200 Sobic005G117400--Sobic010G224200 Sobic003G244600 Sobic003G244600 Sobic008G189200--Sobic003G244600 Sobic008G190900 Sobic008G190900 Sobic008G189200--Sobic008G190900 Sobic008G189200--Sobic005G217200 Sobic010G043400 Sobic010G043400 Sobic008G189200--Sobic010G043400 Sobic009G126900 Sobic009G126900 Sobic008G189200--Sobic009G126900 Sobic002G274800 Sobic002G274800 Sobic008G189200--Sobic002G274800 Sobic007G092700 Sobic007G092700 Sobic008G189200--Sobic007G092700 Sobic003G105800 Sobic003G105800 Sobic008G189200--Sobic003G105800 Sobic001G150200 Sobic001G150200 Sobic008G189200--Sobic001G150200 Sobic005G217200--Sobic008G189200 Sobic010G210200 Sobic010G210200 Sobic005G217200--Sobic010G210200 Sobic003G363100 Sobic003G363100 Sobic005G217200--Sobic003G363100 Sobic005G217200--Sobic009G126900 Sobic004G237600 Sobic004G237600 Sobic005G217200--Sobic004G237600 Sobic003G276000 Sobic003G276000 Sobic005G217200--Sobic003G276000 Sobic005G217200--Sobic003G244600 Sobic010G162900 Sobic010G162900 Sobic005G217200--Sobic010G162900 Sobic002G172900 Sobic002G172900 Sobic005G217200--Sobic002G172900 Sobic002G000400 Sobic002G000400 Sobic005G136300--Sobic002G000400 Sobic005G137200 Sobic005G137200 Sobic005G136300--Sobic005G137200 Sobic005G137000 Sobic005G137000 Sobic005G136300--Sobic005G137000 Sobic001G401300 Sobic001G401300 Sobic005G136300--Sobic001G401300 Sobic010G004200 Sobic010G004200 Sobic005G136300--Sobic010G004200 Sobic003G215800 Sobic003G215800 Sobic005G136300--Sobic003G215800 Sobic005G137100 Sobic005G137100 Sobic005G136300--Sobic005G137100 Sobic006G226800 Sobic006G226800 Sobic005G136300--Sobic006G226800 Sobic005G136300--Sobic005G117400 Sobic001G151800--Sobic009G236200 Sobic001G151800--Sobic002G355200 Sobic001G151800--Sobic007G125900 Sobic001G151800--Sobic003G232900 Sobic001G151800--Sobic003G348400 Sobic004G236600 Sobic004G236600 Sobic001G151800--Sobic004G236600 Sobic001G151800--Sobic005G117400 Sobic001G151800--Sobic006G140000 Sobic009G004200 Sobic009G004200 Sobic001G151800--Sobic009G004200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.