Gene annotation
Transcriptome id Sobic.006G002600.1
Synonym IRX9-L, Sb06g000430, I9H
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
glycosyltransferase family 43 protein, putative, expressed
UniProt A0A1Z5RCD2
Pfam PF03360
Panther DB PTHR10896 PTHR10896:SF33
NCBI CDD KOG1476; Beta-1,3-glucuronyltransferase B3GAT1/SQV-8
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0015018galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity


Orthologs (automatic annotation)
TAIR AT1G27600 : Nucleotide-diphospho-sugar transferases superfamily protein
RAP-DB (Rice) LOC_Os04g01280.1 : glycosyltransferase family 43 protein, putative, expressed
MaizeGDB (Corn) Zm00025a012187 , Zm00025a055513
Brachypodium KQJ81696 , PNT60617
Barley HORVU2Hr1G006000.2 , HORVU2Hr1G006000.3 , HORVU2Hr1G006000.1 , HORVU2Hr1G006000.6 , HORVU2Hr1G006000.4 , HORVU2Hr1G006000.5
Wheat TraesCS2A02G040300 , TraesCS2A02G040300 , TraesCS2D02G038900
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G125900 protein kinase domain containing protein, expressed -
2 Sobic.009G079300 receptor protein kinase-like, putative, expressed -
3 Sobic.009G000200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phospholipid-transporting ATPase, putative, expressed K01530: phospholipid-translocating ATPase
4 Sobic.005G016800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CRP11 - Cysteine-rich family protein precursor, expressed -
5 Sobic.009G135100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lipase, putative, expressed -
6 Sobic.009G167700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
7 Sobic.009G236200 lectin-like receptor kinase 7, putative, expressed -
8 Sobic.001G386400 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
9 Sobic.002G172900 OBP32pep, putative, expressed -
10 Sobic.001G488500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"OsFBK12(Ortholog in rice:Chen et al., 2013)"(PubMedID : 31659851)@OsFBK12 - F-box domain and kelch repeat containing protein, expressed -
11 Sobic.005G231900 mitochondrial carrier protein, putative, expressed K15103: UCP2_3, solute carrier family 25 (mitochondrial uncoupling protein), member 8/9
12 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
13 Sobic.009G127000 leucine-rich repeat family protein, putative, expressed -
14 Sobic.001G180900 secretory carrier-associated membrane protein 4, putative, expressed -
15 Sobic.003G348400 ankyrin repeat-containing protein, putative, expressed -
16 Sobic.004G102400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
17 Sobic.003G316300 insulin-degrading enzyme, putative, expressed K01408: IDE, insulysin
18 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4
19 Sobic.006G119200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
20 Sobic.006G140000 receptor-like protein kinase precursor, putative, expressed -


Gene co-expression network
sample Sobic006G002600 Sobic006G002600 Sobic007G125900 Sobic007G125900 Sobic006G002600--Sobic007G125900 Sobic009G079300 Sobic009G079300 Sobic006G002600--Sobic009G079300 Sobic009G000200 Sobic009G000200 Sobic006G002600--Sobic009G000200 Sobic005G016800 Sobic005G016800 Sobic006G002600--Sobic005G016800 Sobic009G135100 Sobic009G135100 Sobic006G002600--Sobic009G135100 Sobic009G167700 Sobic009G167700 Sobic006G002600--Sobic009G167700 Sobic009G236200 Sobic009G236200 Sobic006G002600--Sobic009G236200 Sobic001G386400 Sobic001G386400 Sobic006G002600--Sobic001G386400 Sobic002G172900 Sobic002G172900 Sobic006G002600--Sobic002G172900 Sobic003G348400 Sobic003G348400 Sobic007G125900--Sobic003G348400 Sobic005G117400 Sobic005G117400 Sobic007G125900--Sobic005G117400 Sobic001G151800 Sobic001G151800 Sobic007G125900--Sobic001G151800 Sobic001G074200 Sobic001G074200 Sobic007G125900--Sobic001G074200 Sobic007G125900--Sobic009G236200 Sobic002G355200 Sobic002G355200 Sobic007G125900--Sobic002G355200 Sobic007G125900--Sobic005G016800 Sobic004G102400 Sobic004G102400 Sobic007G125900--Sobic004G102400 Sobic009G127000 Sobic009G127000 Sobic007G125900--Sobic009G127000 Sobic009G079300--Sobic009G000200 Sobic004G236550 Sobic004G236550 Sobic009G079300--Sobic004G236550 Sobic003G126300 Sobic003G126300 Sobic009G079300--Sobic003G126300 Sobic003G316300 Sobic003G316300 Sobic009G079300--Sobic003G316300 Sobic007G025800 Sobic007G025800 Sobic009G079300--Sobic007G025800 Sobic001G180900 Sobic001G180900 Sobic009G079300--Sobic001G180900 Sobic003G272400 Sobic003G272400 Sobic009G079300--Sobic003G272400 Sobic009G136100 Sobic009G136100 Sobic009G079300--Sobic009G136100 Sobic003G367300 Sobic003G367300 Sobic009G079300--Sobic003G367300 Sobic009G000200--Sobic009G079300 Sobic009G000200--Sobic003G316300 Sobic009G000200--Sobic001G386400 Sobic001G298500 Sobic001G298500 Sobic009G000200--Sobic001G298500 Sobic009G000200--Sobic006G002600 Sobic008G189200 Sobic008G189200 Sobic009G000200--Sobic008G189200 Sobic004G125900 Sobic004G125900 Sobic009G000200--Sobic004G125900 Sobic009G000200--Sobic001G180900 Sobic006G149600 Sobic006G149600 Sobic009G000200--Sobic006G149600 Sobic002G381300 Sobic002G381300 Sobic005G016800--Sobic002G381300 Sobic005G016800--Sobic009G236200 Sobic005G016800--Sobic007G125900 Sobic001G156300 Sobic001G156300 Sobic005G016800--Sobic001G156300 Sobic005G016800--Sobic002G355200 Sobic005G016800--Sobic004G236550 Sobic005G016800--Sobic009G079300 Sobic005G231900 Sobic005G231900 Sobic005G016800--Sobic005G231900 Sobic005G016800--Sobic001G151800 Sobic001G103200 Sobic001G103200 Sobic009G135100--Sobic001G103200 Sobic009G135100--Sobic007G125900 Sobic009G135100--Sobic004G236550 Sobic005G035300 Sobic005G035300 Sobic009G135100--Sobic005G035300 Sobic010G016400 Sobic010G016400 Sobic009G135100--Sobic010G016400 Sobic009G135100--Sobic001G074200 Sobic009G135100--Sobic009G079300 Sobic009G200300 Sobic009G200300 Sobic009G135100--Sobic009G200300 Sobic001G085900 Sobic001G085900 Sobic009G135100--Sobic001G085900 Sobic002G244100 Sobic002G244100 Sobic009G167700--Sobic002G244100 Sobic004G341200 Sobic004G341200 Sobic009G167700--Sobic004G341200 Sobic009G167700--Sobic004G102400 Sobic009G167700--Sobic001G386400 Sobic009G167700--Sobic010G016400 Sobic001G089800 Sobic001G089800 Sobic009G167700--Sobic001G089800 Sobic003G354400 Sobic003G354400 Sobic009G167700--Sobic003G354400 Sobic001G132000 Sobic001G132000 Sobic009G167700--Sobic001G132000 Sobic006G119200 Sobic006G119200 Sobic009G167700--Sobic006G119200 Sobic009G236200--Sobic001G151800 Sobic009G236200--Sobic007G125900 Sobic009G236200--Sobic002G355200 Sobic009G236200--Sobic005G016800 Sobic009G236200--Sobic002G381300 Sobic004G236600 Sobic004G236600 Sobic009G236200--Sobic004G236600 Sobic009G236200--Sobic009G167700 Sobic009G236200--Sobic004G102400 Sobic005G215900 Sobic005G215900 Sobic009G236200--Sobic005G215900 Sobic001G386400--Sobic006G119200 Sobic001G386400--Sobic009G167700 Sobic001G386400--Sobic009G000200 Sobic001G386400--Sobic003G316300 Sobic002G155400 Sobic002G155400 Sobic001G386400--Sobic002G155400 Sobic010G161450 Sobic010G161450 Sobic001G386400--Sobic010G161450 Sobic004G106900 Sobic004G106900 Sobic001G386400--Sobic004G106900 Sobic002G024100 Sobic002G024100 Sobic001G386400--Sobic002G024100 Sobic001G386400--Sobic004G341200 Sobic009G126900 Sobic009G126900 Sobic002G172900--Sobic009G126900 Sobic002G172900--Sobic001G180900 Sobic008G110600 Sobic008G110600 Sobic002G172900--Sobic008G110600 Sobic001G397400 Sobic001G397400 Sobic002G172900--Sobic001G397400 Sobic008G190900 Sobic008G190900 Sobic002G172900--Sobic008G190900 Sobic002G378800 Sobic002G378800 Sobic002G172900--Sobic002G378800 Sobic001G474700 Sobic001G474700 Sobic002G172900--Sobic001G474700 Sobic006G034000 Sobic006G034000 Sobic002G172900--Sobic006G034000 Sobic003G005600 Sobic003G005600 Sobic002G172900--Sobic003G005600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.