Gene annotation
Transcriptome id Sobic.003G348400.1
Synonym ITN1, Sb03g039140
Functional annotation ankyrin repeat-containing protein, putative, expressed
UniProt C5XP29
Pfam PF12796 PF13962
Panther DB PTHR24177:SF10 PTHR24177
NCBI CDD KOG4412; 26S proteasome regulatory complex, subunit PSMD10 KOG0502Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate)
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G12360 : Ankyrin repeat family protein
RAP-DB (Rice) LOC_Os01g61990.1 : ankyrin repeat-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a026950
Brachypodium KQK10477
Barley HORVU5Hr1G050480.8 , HORVU5Hr1G050480.6 , HORVU5Hr1G050480.5 , HORVU5Hr1G050480.3 , HORVU4Hr1G068400.8 , HORVU4Hr1G068400.3 , HORVU3Hr1G087050.10 , HORVU5Hr1G050480.20 , HORVU5Hr1G050480.12 , HORVU5Hr1G050480.14 , HORVU5Hr1G050480.15 , HORVU5Hr1G050480.16 , HORVU5Hr1G050480.13 , HORVU5Hr1G050480.19 , HORVU3Hr1G087050.9 , HORVU3Hr1G087050.8 , HORVU3Hr1G087050.3 , HORVU3Hr1G087050.2 , HORVU3Hr1G087050.1 , HORVU3Hr1G087050.7 , HORVU3Hr1G087050.6 , HORVU3Hr1G087050.5 , HORVU3Hr1G087050.4
Wheat TraesCS3D02G348800 , TraesCS3D02G348800 , TraesCS3A02G354800 , TraesCS3B02G387800 , TraesCS3B02G387800
Populus -


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cDNA sequences
Sobic.003G348400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G125900 protein kinase domain containing protein, expressed -
2 Sobic.005G117400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transcription factor(PubMedID : 30367619)@WRKY72, expressed -
3 Sobic.001G151800 expressed protein K16275: BAH, E3 ubiquitin-protein ligase BAH
4 Sobic.003G338400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase NAK, putative, expressed -
5 Sobic.004G102400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
6 Sobic.006G140000 receptor-like protein kinase precursor, putative, expressed -
7 Sobic.006G091100 expressed protein -
8 Sobic.005G212700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
9 Sobic.001G003000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
10 Sobic.006G086000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
11 Sobic.003G216232 - -
12 Sobic.009G236200 lectin-like receptor kinase 7, putative, expressed -
13 Sobic.004G236000 laccase precursor protein, putative, expressed K05909: laccase
14 Sobic.001G158500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@LSD1 zinc finger domain containing protein, expressed -
15 Sobic.004G236600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsFBK10 - F-box domain and kelch repeat containing protein, expressed -
16 Sobic.002G355200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@BTBN16 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed -
17 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
18 Sobic.005G150800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@yippee zinc-binding protein, putative, expressed -
19 Sobic.001G074200 LRR receptor-like protein kinase, putative, expressed -
20 Sobic.003G232900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@anthocyanin 3-O-beta-glucosyltransferase, putative, expressed -


Gene co-expression network
sample Sobic003G348400 Sobic003G348400 Sobic007G125900 Sobic007G125900 Sobic003G348400--Sobic007G125900 Sobic005G117400 Sobic005G117400 Sobic003G348400--Sobic005G117400 Sobic001G151800 Sobic001G151800 Sobic003G348400--Sobic001G151800 Sobic003G338400 Sobic003G338400 Sobic003G348400--Sobic003G338400 Sobic004G102400 Sobic004G102400 Sobic003G348400--Sobic004G102400 Sobic006G140000 Sobic006G140000 Sobic003G348400--Sobic006G140000 Sobic006G091100 Sobic006G091100 Sobic003G348400--Sobic006G091100 Sobic005G212700 Sobic005G212700 Sobic003G348400--Sobic005G212700 Sobic001G003000 Sobic001G003000 Sobic003G348400--Sobic001G003000 Sobic007G125900--Sobic003G348400 Sobic007G125900--Sobic005G117400 Sobic007G125900--Sobic001G151800 Sobic001G074200 Sobic001G074200 Sobic007G125900--Sobic001G074200 Sobic009G236200 Sobic009G236200 Sobic007G125900--Sobic009G236200 Sobic002G355200 Sobic002G355200 Sobic007G125900--Sobic002G355200 Sobic005G016800 Sobic005G016800 Sobic007G125900--Sobic005G016800 Sobic007G125900--Sobic004G102400 Sobic009G127000 Sobic009G127000 Sobic007G125900--Sobic009G127000 Sobic004G158901 Sobic004G158901 Sobic005G117400--Sobic004G158901 Sobic005G117400--Sobic007G125900 Sobic004G058000 Sobic004G058000 Sobic005G117400--Sobic004G058000 Sobic002G249000 Sobic002G249000 Sobic005G117400--Sobic002G249000 Sobic005G117400--Sobic003G348400 Sobic004G050000 Sobic004G050000 Sobic005G117400--Sobic004G050000 Sobic003G232900 Sobic003G232900 Sobic005G117400--Sobic003G232900 Sobic007G025700 Sobic007G025700 Sobic005G117400--Sobic007G025700 Sobic010G224200 Sobic010G224200 Sobic005G117400--Sobic010G224200 Sobic001G151800--Sobic009G236200 Sobic001G151800--Sobic002G355200 Sobic001G151800--Sobic007G125900 Sobic001G151800--Sobic003G232900 Sobic001G151800--Sobic003G348400 Sobic004G236600 Sobic004G236600 Sobic001G151800--Sobic004G236600 Sobic001G151800--Sobic005G117400 Sobic001G151800--Sobic006G140000 Sobic009G004200 Sobic009G004200 Sobic001G151800--Sobic009G004200 Sobic003G338400--Sobic004G102400 Sobic003G338400--Sobic003G348400 Sobic004G341200 Sobic004G341200 Sobic003G338400--Sobic004G341200 Sobic009G167700 Sobic009G167700 Sobic003G338400--Sobic009G167700 Sobic010G016400 Sobic010G016400 Sobic003G338400--Sobic010G016400 Sobic003G338400--Sobic001G003000 Sobic001G158500 Sobic001G158500 Sobic003G338400--Sobic001G158500 Sobic003G338400--Sobic006G140000 Sobic001G089800 Sobic001G089800 Sobic003G338400--Sobic001G089800 Sobic004G102400--Sobic003G338400 Sobic004G102400--Sobic001G158500 Sobic004G102400--Sobic001G003000 Sobic004G102400--Sobic009G167700 Sobic005G150800 Sobic005G150800 Sobic004G102400--Sobic005G150800 Sobic006G271200 Sobic006G271200 Sobic004G102400--Sobic006G271200 Sobic004G102400--Sobic001G089800 Sobic001G057800 Sobic001G057800 Sobic004G102400--Sobic001G057800 Sobic004G042300 Sobic004G042300 Sobic004G102400--Sobic004G042300 Sobic001G488500 Sobic001G488500 Sobic006G140000--Sobic001G488500 Sobic006G140000--Sobic003G348400 Sobic004G185900 Sobic004G185900 Sobic006G140000--Sobic004G185900 Sobic006G140000--Sobic003G338400 Sobic006G140000--Sobic001G151800 Sobic005G215900 Sobic005G215900 Sobic006G140000--Sobic005G215900 Sobic003G085300 Sobic003G085300 Sobic006G140000--Sobic003G085300 Sobic006G140000--Sobic010G016400 Sobic006G140000--Sobic004G102400 Sobic006G091100--Sobic001G158500 Sobic006G091100--Sobic003G348400 Sobic001G085900 Sobic001G085900 Sobic006G091100--Sobic001G085900 Sobic006G091100--Sobic003G338400 Sobic006G091100--Sobic004G102400 Sobic001G313500 Sobic001G313500 Sobic006G091100--Sobic001G313500 Sobic006G091100--Sobic006G140000 Sobic006G192700 Sobic006G192700 Sobic006G091100--Sobic006G192700 Sobic006G091100--Sobic010G016400 Sobic005G212700--Sobic003G348400 Sobic005G212700--Sobic007G025700 Sobic003G189200 Sobic003G189200 Sobic005G212700--Sobic003G189200 Sobic005G212700--Sobic001G151800 Sobic004G304400 Sobic004G304400 Sobic005G212700--Sobic004G304400 Sobic005G212700--Sobic005G117400 Sobic007G003200 Sobic007G003200 Sobic005G212700--Sobic007G003200 Sobic005G212700--Sobic009G236200 Sobic004G308000 Sobic004G308000 Sobic005G212700--Sobic004G308000 Sobic001G003000--Sobic006G271200 Sobic001G003000--Sobic001G089800 Sobic009G126900 Sobic009G126900 Sobic001G003000--Sobic009G126900 Sobic001G003000--Sobic004G102400 Sobic006G237900 Sobic006G237900 Sobic001G003000--Sobic006G237900 Sobic003G005600 Sobic003G005600 Sobic001G003000--Sobic003G005600 Sobic010G043400 Sobic010G043400 Sobic001G003000--Sobic010G043400 Sobic009G193700 Sobic009G193700 Sobic001G003000--Sobic009G193700 Sobic001G350700 Sobic001G350700 Sobic001G003000--Sobic001G350700
Octagon: transcription factors


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