Gene annotation
Transcriptome id Sobic.006G165400.1
Synonym GDH2, Sb06g024150
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)" (PubMedID : 27586543)
glutamate dehydrogenase protein, putative, expressed
UniProt C5YD28
Pfam PF02812 PF00208
Panther DB PTHR11606 PTHR11606:SF12
NCBI CDD -
KEGG Orthology K00261; GLUD1_2, glutamate dehydrogenase (NAD(P)+)
Gene Ontology GO:0016491; oxidoreductase activity GO:0006520cellular amino acid metabolic process


Orthologs (automatic annotation)
TAIR AT5G07440 : glutamate dehydrogenase 2
RAP-DB (Rice) LOC_Os02g43470.1 : glutamate dehydrogenase protein, putative, expressed
MaizeGDB (Corn) Zm00025a056651
Brachypodium KQJ83877
Barley -
Wheat TraesCS2B02G409300 , TraesCS2D02G388800 , TraesCS2D02G388800
Populus PNS90226 , PNS90227 , PNS90224 , PNS90225 , PNS90223


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cDNA sequences
Sobic.006G165400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G090200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@cytidine deaminase, putative, expressed -
2 Sobic.006G218300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
3 Sobic.004G050000 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
4 Sobic.006G121500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@cytochrome P450, putative, expressed -
5 Sobic.001G066000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
6 Sobic.003G280900 NADP-malic enzyme(PubMedID : 26904072)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
7 Sobic.009G009600 expressed protein -
8 Sobic.010G069200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cyclin-dependent kinase G-2, putative, expressed K08818: cell division cycle 2-like
9 Sobic.002G367400 esterase, putative, expressed -
10 Sobic.004G273100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@jmjC domain containing protein, expressed -
11 Sobic.009G254900 uncharacterized protein PA4923, putative, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
12 Sobic.006G224200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
13 Sobic.010G168800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@inositol oxygenase, putative, expressed K00469: inositol oxygenase
14 Sobic.009G043600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
15 Sobic.008G034500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@phytosulfokines precursor, putative, expressed -
16 Sobic.002G183200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
17 Sobic.002G055600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
18 Sobic.002G355100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@STE_PAK_Ste20_Slob_Wnk.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase
19 Sobic.002G249000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
20 Sobic.006G199100 pathogenesis-related Bet v I family protein, putative, expressed -


Gene co-expression network
sample Sobic006G165400 Sobic006G165400 Sobic002G090200 Sobic002G090200 Sobic006G165400--Sobic002G090200 Sobic006G218300 Sobic006G218300 Sobic006G165400--Sobic006G218300 Sobic004G050000 Sobic004G050000 Sobic006G165400--Sobic004G050000 Sobic006G121500 Sobic006G121500 Sobic006G165400--Sobic006G121500 Sobic001G066000 Sobic001G066000 Sobic006G165400--Sobic001G066000 Sobic003G280900 Sobic003G280900 Sobic006G165400--Sobic003G280900 Sobic009G009600 Sobic009G009600 Sobic006G165400--Sobic009G009600 Sobic010G069200 Sobic010G069200 Sobic006G165400--Sobic010G069200 Sobic002G367400 Sobic002G367400 Sobic006G165400--Sobic002G367400 Sobic002G090200--Sobic006G218300 Sobic002G090200--Sobic004G050000 Sobic004G074500 Sobic004G074500 Sobic002G090200--Sobic004G074500 Sobic002G090200--Sobic006G165400 Sobic001G026900 Sobic001G026900 Sobic002G090200--Sobic001G026900 Sobic004G308000 Sobic004G308000 Sobic002G090200--Sobic004G308000 Sobic004G277000 Sobic004G277000 Sobic002G090200--Sobic004G277000 Sobic003G215800 Sobic003G215800 Sobic002G090200--Sobic003G215800 Sobic002G249000 Sobic002G249000 Sobic002G090200--Sobic002G249000 Sobic006G218300--Sobic002G090200 Sobic006G218300--Sobic001G066000 Sobic006G218300--Sobic006G165400 Sobic009G043600 Sobic009G043600 Sobic006G218300--Sobic009G043600 Sobic006G218300--Sobic004G050000 Sobic006G218300--Sobic006G121500 Sobic006G218300--Sobic002G367400 Sobic009G254900 Sobic009G254900 Sobic006G218300--Sobic009G254900 Sobic006G199100 Sobic006G199100 Sobic006G218300--Sobic006G199100 Sobic004G050000--Sobic009G043600 Sobic004G050000--Sobic001G066000 Sobic004G049900 Sobic004G049900 Sobic004G050000--Sobic004G049900 Sobic004G050000--Sobic004G277000 Sobic002G267500 Sobic002G267500 Sobic004G050000--Sobic002G267500 Sobic004G050000--Sobic006G121500 Sobic004G050000--Sobic002G090200 Sobic009G177800 Sobic009G177800 Sobic004G050000--Sobic009G177800 Sobic006G108400 Sobic006G108400 Sobic004G050000--Sobic006G108400 Sobic001G401100 Sobic001G401100 Sobic006G121500--Sobic001G401100 Sobic002G055600 Sobic002G055600 Sobic006G121500--Sobic002G055600 Sobic004G148200 Sobic004G148200 Sobic006G121500--Sobic004G148200 Sobic006G121500--Sobic002G367400 Sobic002G055700 Sobic002G055700 Sobic006G121500--Sobic002G055700 Sobic006G121500--Sobic010G069200 Sobic004G189500 Sobic004G189500 Sobic006G121500--Sobic004G189500 Sobic006G121500--Sobic004G050000 Sobic006G240600 Sobic006G240600 Sobic006G121500--Sobic006G240600 Sobic001G066000--Sobic009G043600 Sobic001G066000--Sobic004G050000 Sobic001G066000--Sobic006G218300 Sobic001G066000--Sobic006G121500 Sobic003G322900 Sobic003G322900 Sobic001G066000--Sobic003G322900 Sobic001G066000--Sobic004G277000 Sobic001G319500 Sobic001G319500 Sobic001G066000--Sobic001G319500 Sobic001G066000--Sobic002G055600 Sobic001G066000--Sobic002G249000 Sobic003G280900--Sobic002G249000 Sobic003G333400 Sobic003G333400 Sobic003G280900--Sobic003G333400 Sobic001G010400 Sobic001G010400 Sobic003G280900--Sobic001G010400 Sobic004G276100 Sobic004G276100 Sobic003G280900--Sobic004G276100 Sobic003G280900--Sobic004G050000 Sobic007G195100 Sobic007G195100 Sobic003G280900--Sobic007G195100 Sobic003G280900--Sobic001G026900 Sobic005G117400 Sobic005G117400 Sobic003G280900--Sobic005G117400 Sobic003G280900--Sobic002G090200 Sobic002G004900 Sobic002G004900 Sobic009G009600--Sobic002G004900 Sobic001G503100 Sobic001G503100 Sobic009G009600--Sobic001G503100 Sobic003G087300 Sobic003G087300 Sobic009G009600--Sobic003G087300 Sobic010G052700 Sobic010G052700 Sobic009G009600--Sobic010G052700 Sobic009G009600--Sobic009G254900 Sobic001G297000 Sobic001G297000 Sobic009G009600--Sobic001G297000 Sobic004G148100 Sobic004G148100 Sobic009G009600--Sobic004G148100 Sobic001G325400 Sobic001G325400 Sobic009G009600--Sobic001G325400 Sobic003G364300 Sobic003G364300 Sobic009G009600--Sobic003G364300 Sobic006G224200 Sobic006G224200 Sobic010G069200--Sobic006G224200 Sobic010G069200--Sobic006G121500 Sobic003G423500 Sobic003G423500 Sobic010G069200--Sobic003G423500 Sobic007G171000 Sobic007G171000 Sobic010G069200--Sobic007G171000 Sobic010G069200--Sobic004G050000 Sobic010G069200--Sobic003G322900 Sobic004G307000 Sobic004G307000 Sobic010G069200--Sobic004G307000 Sobic010G069200--Sobic002G055600 Sobic007G137700 Sobic007G137700 Sobic010G069200--Sobic007G137700 Sobic004G237800 Sobic004G237800 Sobic002G367400--Sobic004G237800 Sobic002G367400--Sobic002G055700 Sobic002G017800 Sobic002G017800 Sobic002G367400--Sobic002G017800 Sobic001G466000 Sobic001G466000 Sobic002G367400--Sobic001G466000 Sobic001G367600 Sobic001G367600 Sobic002G367400--Sobic001G367600 Sobic003G043500 Sobic003G043500 Sobic002G367400--Sobic003G043500 Sobic009G111000 Sobic009G111000 Sobic002G367400--Sobic009G111000 Sobic001G046100 Sobic001G046100 Sobic002G367400--Sobic001G046100 Sobic004G321300 Sobic004G321300 Sobic002G367400--Sobic004G321300
Octagon: transcription factors


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