Gene annotation
Transcriptome id Sobic.004G273100.1
Synonym Sb04g031040
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
jmjC domain containing protein, expressed
UniProt A0A194YRU3
Pfam PF02928 PF02375 PF02373
Panther DB PTHR10694 PTHR10694:SF33
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G46910 : Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
RAP-DB (Rice) LOC_Os10g42690.1 : jmjC domain containing protein, expressed
MaizeGDB (Corn) Zm00025a021636
Brachypodium PNT73417 , PNT73418
Barley HORVU6Hr1G067480.19 , HORVU6Hr1G067480.18 , HORVU6Hr1G067480.13 , HORVU6Hr1G067480.12 , HORVU6Hr1G067480.11 , HORVU6Hr1G067480.10 , HORVU6Hr1G067480.17 , HORVU6Hr1G067480.16 , HORVU6Hr1G067480.15 , HORVU6Hr1G067480.30 , HORVU6Hr1G067480.23 , HORVU6Hr1G067480.20 , HORVU6Hr1G067480.21 , HORVU6Hr1G067480.26 , HORVU6Hr1G067480.24 , HORVU6Hr1G067480.25 , HORVU6Hr1G067480.28 , HORVU6Hr1G067480.29 , HORVU6Hr1G067480.9 , HORVU6Hr1G067480.8 , HORVU6Hr1G067480.3 , HORVU6Hr1G067480.1 , HORVU6Hr1G067480.7 , HORVU6Hr1G067480.6 , HORVU6Hr1G067480.5 , HORVU6Hr1G067480.4
Wheat TraesCS6B02G293600 , TraesCS6B02G293600 , TraesCS6A02G266300 , TraesCS6A02G266300 , TraesCS6A02G266300 , TraesCS6D02G248400 , TraesCS6D02G248400 , TraesCS6D02G248400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G039600 expressed protein -
2 Sobic.009G120000 - -
3 Sobic.002G090200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@cytidine deaminase, putative, expressed -
4 Sobic.001G533400 major facilitator superfamily domain-containing protein 5, putative, expressed -
5 Sobic.004G030501 - -
6 Sobic.010G001900 Long chain acyl-CoA oxidase(PubMedID : 18985313)@acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
7 Sobic.008G112600 guanylate kinase, putative, expressed K00942: E2.7.4.8, guanylate kinase
8 Sobic.002G267500 hydrolase, alpha/beta fold family domain containing protein, expressed -
9 Sobic.003G227300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY11, expressed -
10 Sobic.006G173900 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
11 Sobic.006G165400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@glutamate dehydrogenase protein, putative, expressed K00261: GLUD1_2, glutamate dehydrogenase (NAD(P)+)
12 Sobic.010G099900 expressed protein -
13 Sobic.010G153100 prefoldin, putative, expressed K14009: BCAP31, B-cell receptor-associated protein 31
14 Sobic.001G319500 Relative abundance under control condition and upregulated in cold susceptible sorghum under cold stress(PubMedID : 26645959)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
15 Sobic.002G190900 expressed protein -
16 Sobic.001G089500 RNA recognition motif containing protein, putative, expressed -
17 Sobic.009G177800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
18 Sobic.001G508466 - -
19 Sobic.006G239300 thiamine-repressible mitochondrial transport protein THI74, putative, expressed K15289: solute carrier family 35, member F5
20 Sobic.002G264400 metallo-beta-lactamase family protein, putative, expressed K01069: gloB, gloC, hydroxyacylglutathione hydrolase


Gene co-expression network
sample Sobic004G273100 Sobic004G273100 Sobic006G039600 Sobic006G039600 Sobic004G273100--Sobic006G039600 Sobic009G120000 Sobic009G120000 Sobic004G273100--Sobic009G120000 Sobic002G090200 Sobic002G090200 Sobic004G273100--Sobic002G090200 Sobic001G533400 Sobic001G533400 Sobic004G273100--Sobic001G533400 Sobic004G030501 Sobic004G030501 Sobic004G273100--Sobic004G030501 Sobic010G001900 Sobic010G001900 Sobic004G273100--Sobic010G001900 Sobic008G112600 Sobic008G112600 Sobic004G273100--Sobic008G112600 Sobic002G267500 Sobic002G267500 Sobic004G273100--Sobic002G267500 Sobic003G227300 Sobic003G227300 Sobic004G273100--Sobic003G227300 Sobic006G039600--Sobic004G273100 Sobic005G058800 Sobic005G058800 Sobic006G039600--Sobic005G058800 Sobic001G118300 Sobic001G118300 Sobic006G039600--Sobic001G118300 Sobic009G069600 Sobic009G069600 Sobic006G039600--Sobic009G069600 Sobic010G031000 Sobic010G031000 Sobic006G039600--Sobic010G031000 Sobic007G016100 Sobic007G016100 Sobic006G039600--Sobic007G016100 Sobic001G508466 Sobic001G508466 Sobic006G039600--Sobic001G508466 Sobic009G128700 Sobic009G128700 Sobic006G039600--Sobic009G128700 Sobic006G039600--Sobic001G533400 Sobic004G166700 Sobic004G166700 Sobic009G120000--Sobic004G166700 Sobic007G141500 Sobic007G141500 Sobic009G120000--Sobic007G141500 Sobic005G051200 Sobic005G051200 Sobic009G120000--Sobic005G051200 Sobic001G317200 Sobic001G317200 Sobic009G120000--Sobic001G317200 Sobic005G084600 Sobic005G084600 Sobic009G120000--Sobic005G084600 Sobic003G117600 Sobic003G117600 Sobic009G120000--Sobic003G117600 Sobic006G092500 Sobic006G092500 Sobic009G120000--Sobic006G092500 Sobic001G243600 Sobic001G243600 Sobic009G120000--Sobic001G243600 Sobic005G213200 Sobic005G213200 Sobic009G120000--Sobic005G213200 Sobic006G218300 Sobic006G218300 Sobic002G090200--Sobic006G218300 Sobic004G050000 Sobic004G050000 Sobic002G090200--Sobic004G050000 Sobic004G074500 Sobic004G074500 Sobic002G090200--Sobic004G074500 Sobic006G165400 Sobic006G165400 Sobic002G090200--Sobic006G165400 Sobic001G026900 Sobic001G026900 Sobic002G090200--Sobic001G026900 Sobic004G308000 Sobic004G308000 Sobic002G090200--Sobic004G308000 Sobic004G277000 Sobic004G277000 Sobic002G090200--Sobic004G277000 Sobic003G215800 Sobic003G215800 Sobic002G090200--Sobic003G215800 Sobic002G249000 Sobic002G249000 Sobic002G090200--Sobic002G249000 Sobic001G339700 Sobic001G339700 Sobic001G533400--Sobic001G339700 Sobic001G533400--Sobic010G001900 Sobic001G119100 Sobic001G119100 Sobic001G533400--Sobic001G119100 Sobic002G201600 Sobic002G201600 Sobic001G533400--Sobic002G201600 Sobic008G025600 Sobic008G025600 Sobic001G533400--Sobic008G025600 Sobic004G205100 Sobic004G205100 Sobic001G533400--Sobic004G205100 Sobic005G091500 Sobic005G091500 Sobic001G533400--Sobic005G091500 Sobic001G119000 Sobic001G119000 Sobic001G533400--Sobic001G119000 Sobic001G252300 Sobic001G252300 Sobic001G533400--Sobic001G252300 Sobic004G030501--Sobic001G533400 Sobic004G030501--Sobic010G001900 Sobic010G262300 Sobic010G262300 Sobic004G030501--Sobic010G262300 Sobic004G030501--Sobic001G508466 Sobic001G077000 Sobic001G077000 Sobic004G030501--Sobic001G077000 Sobic001G197000 Sobic001G197000 Sobic004G030501--Sobic001G197000 Sobic004G030501--Sobic004G273100 Sobic003G273000 Sobic003G273000 Sobic004G030501--Sobic003G273000 Sobic001G513300 Sobic001G513300 Sobic004G030501--Sobic001G513300 Sobic010G001900--Sobic001G533400 Sobic010G001900--Sobic002G201600 Sobic010G001900--Sobic005G051200 Sobic010G001900--Sobic001G339700 Sobic002G414600 Sobic002G414600 Sobic010G001900--Sobic002G414600 Sobic010G001900--Sobic008G025600 Sobic010G001900--Sobic001G317200 Sobic003G317100 Sobic003G317100 Sobic010G001900--Sobic003G317100 Sobic006G137800 Sobic006G137800 Sobic010G001900--Sobic006G137800 Sobic003G072300 Sobic003G072300 Sobic008G112600--Sobic003G072300 Sobic009G179900 Sobic009G179900 Sobic008G112600--Sobic009G179900 Sobic004G334400 Sobic004G334400 Sobic008G112600--Sobic004G334400 Sobic008G112600--Sobic005G084600 Sobic007G115100 Sobic007G115100 Sobic008G112600--Sobic007G115100 Sobic001G082600 Sobic001G082600 Sobic008G112600--Sobic001G082600 Sobic008G112600--Sobic004G205100 Sobic004G269700 Sobic004G269700 Sobic008G112600--Sobic004G269700 Sobic002G187500 Sobic002G187500 Sobic008G112600--Sobic002G187500 Sobic001G281400 Sobic001G281400 Sobic002G267500--Sobic001G281400 Sobic004G272800 Sobic004G272800 Sobic002G267500--Sobic004G272800 Sobic002G046100 Sobic002G046100 Sobic002G267500--Sobic002G046100 Sobic003G253000 Sobic003G253000 Sobic002G267500--Sobic003G253000 Sobic010G149300 Sobic010G149300 Sobic002G267500--Sobic010G149300 Sobic002G345300 Sobic002G345300 Sobic002G267500--Sobic002G345300 Sobic001G459200 Sobic001G459200 Sobic002G267500--Sobic001G459200 Sobic009G143400 Sobic009G143400 Sobic002G267500--Sobic009G143400 Sobic006G173900 Sobic006G173900 Sobic002G267500--Sobic006G173900 Sobic003G227300--Sobic001G119100 Sobic002G183200 Sobic002G183200 Sobic003G227300--Sobic002G183200 Sobic001G025300 Sobic001G025300 Sobic003G227300--Sobic001G025300 Sobic007G145600 Sobic007G145600 Sobic003G227300--Sobic007G145600 Sobic003G227300--Sobic001G339700 Sobic004G071650 Sobic004G071650 Sobic003G227300--Sobic004G071650 Sobic001G331301 Sobic001G331301 Sobic003G227300--Sobic001G331301 Sobic003G227300--Sobic009G120000 Sobic005G045900 Sobic005G045900 Sobic003G227300--Sobic005G045900
Octagon: transcription factors


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