Gene annotation
Transcriptome id Sobic.003G134800.1
Synonym Sb03g011460
Functional annotation coatomer subunit beta-1, putative, expressed
UniProt A0A125QUG7 , A0A1W0VQT3 , A0A1B6Q307
Pfam PF07718 PF14806 PF01602
Panther DB PTHR10635
NCBI CDD -
KEGG Orthology K17301; COPB1, coatomer subunit beta
Gene Ontology GO:0016192; vesicle-mediated transport GO:0006886intracellular protein transport GO:0005198structural molecule activity GO:0005737cytoplasm


Orthologs (automatic annotation)
TAIR AT4G31480 : Coatomer, beta subunit
RAP-DB (Rice) LOC_Os01g17430.1 : coatomer subunit beta-1, putative, expressed
MaizeGDB (Corn) Zm00025a012855 , Zm00025a035182 , Zm00025a024192
Brachypodium KQK03969 , KQK03974
Barley HORVU3Hr1G040270.8 , HORVU3Hr1G040270.9 , HORVU3Hr1G040270.2 , HORVU3Hr1G040270.3 , HORVU3Hr1G040270.1 , HORVU3Hr1G040270.6 , HORVU3Hr1G040270.7 , HORVU3Hr1G040270.4 , HORVU3Hr1G040270.5 , HORVU3Hr1G040280.1 , HORVU3Hr1G111730.1 , HORVU3Hr1G040350.4 , HORVU3Hr1G040350.7 , HORVU3Hr1G040350.6 , HORVU3Hr1G040350.1 , HORVU3Hr1G040350.3 , HORVU3Hr1G040350.2
Wheat TraesCS3A02G192400 , TraesCS3D02G195500 , TraesCS3B02G221400 , TraesCS3B02G221400 , TraesCS3B02G221400 , TraesCS3B02G221400 , TraesCS3A02G192400 , TraesCS5B02G070600 , TraesCS3D02G195600 , TraesCS3D02G195600 , TraesCS3D02G195600 , TraesCS3D02G195600 , TraesCS3D02G195600 , TraesCS3D02G195600 , TraesCS3D02G195600 , TraesCS3A02G193200 , TraesCS3A02G193200 , TraesCS3A02G193200 , TraesCS5B02G070700 , TraesCS3B02G291400 , TraesCS3B02G291400 , TraesCS3B02G221200
Populus -


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cDNA sequences
Sobic.003G134800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G070600 coatomer subunit gamma-2, putative, expressed K17267: coatomer subunit gamma
2 Sobic.008G072200 coatomer subunit delta, putative, expressed -
3 Sobic.002G141700 unc-50, putative, expressed -
4 Sobic.010G178600 coatomer subunit beta, putative, expressed K17302: COPB2, coatomer subunit beta'
5 Sobic.001G117800 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
6 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
7 Sobic.001G220900 adaptin ear-binding coat-associated protein 2, putative, expressed -
8 Sobic.001G151600 OsRhmbd9 - Putative Rhomboid homologue, expressed -
9 Sobic.003G143700 ATP-citrate synthase subunit 1, putative, expressed K01648: ATP citrate (pro-S)-lyase
10 Sobic.002G029300 pleckstrin homology domain-containing protein, putative, expressed -
11 Sobic.002G313600 src homology-3 domain protein 3, putative, expressed -
12 Sobic.003G161600 dephospho-CoA kinase, putative, expressed K00859: dephospho-CoA kinase
13 Sobic.001G281900 miro, putative, expressed K07977: Arf/Sar family, other
14 Sobic.001G490500 conserved oligomeric Golgi complex component 4, related, putative, expressed -
15 Sobic.003G029600 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
16 Sobic.008G129600 glucosidase II beta subunit-like domain containing protein, expressed K10088: protein OS-9
17 Sobic.002G087000 peptidase, T1 family, putative, expressed K02739: 20S proteasome subunit beta 2
18 Sobic.004G336300 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
19 Sobic.001G161700 vesicle-fusing ATPase, putative, expressed K06027: NSF, vesicle-fusing ATPase
20 Sobic.001G196100 src homology-3 domain protein 3, putative, expressed -


Gene co-expression network
sample Sobic003G134800 Sobic003G134800 Sobic002G070600 Sobic002G070600 Sobic003G134800--Sobic002G070600 Sobic008G072200 Sobic008G072200 Sobic003G134800--Sobic008G072200 Sobic002G141700 Sobic002G141700 Sobic003G134800--Sobic002G141700 Sobic010G178600 Sobic010G178600 Sobic003G134800--Sobic010G178600 Sobic001G117800 Sobic001G117800 Sobic003G134800--Sobic001G117800 Sobic002G423500 Sobic002G423500 Sobic003G134800--Sobic002G423500 Sobic001G220900 Sobic001G220900 Sobic003G134800--Sobic001G220900 Sobic001G151600 Sobic001G151600 Sobic003G134800--Sobic001G151600 Sobic003G143700 Sobic003G143700 Sobic003G134800--Sobic003G143700 Sobic002G070600--Sobic008G072200 Sobic002G070600--Sobic001G117800 Sobic001G161700 Sobic001G161700 Sobic002G070600--Sobic001G161700 Sobic008G085700 Sobic008G085700 Sobic002G070600--Sobic008G085700 Sobic004G336300 Sobic004G336300 Sobic002G070600--Sobic004G336300 Sobic003G029600 Sobic003G029600 Sobic002G070600--Sobic003G029600 Sobic006G021700 Sobic006G021700 Sobic002G070600--Sobic006G021700 Sobic009G118900 Sobic009G118900 Sobic002G070600--Sobic009G118900 Sobic002G070600--Sobic010G178600 Sobic008G072200--Sobic002G070600 Sobic008G072200--Sobic001G161700 Sobic008G072200--Sobic004G336300 Sobic001G115700 Sobic001G115700 Sobic008G072200--Sobic001G115700 Sobic008G072200--Sobic001G117800 Sobic002G029300 Sobic002G029300 Sobic008G072200--Sobic002G029300 Sobic001G490500 Sobic001G490500 Sobic008G072200--Sobic001G490500 Sobic008G072200--Sobic003G134800 Sobic008G072200--Sobic008G085700 Sobic003G261800 Sobic003G261800 Sobic002G141700--Sobic003G261800 Sobic001G443200 Sobic001G443200 Sobic002G141700--Sobic001G443200 Sobic001G077900 Sobic001G077900 Sobic002G141700--Sobic001G077900 Sobic002G087000 Sobic002G087000 Sobic002G141700--Sobic002G087000 Sobic002G141700--Sobic001G220900 Sobic007G173700 Sobic007G173700 Sobic002G141700--Sobic007G173700 Sobic002G141700--Sobic002G029300 Sobic002G141700--Sobic003G134800 Sobic001G542900 Sobic001G542900 Sobic002G141700--Sobic001G542900 Sobic004G174700 Sobic004G174700 Sobic010G178600--Sobic004G174700 Sobic010G178600--Sobic009G118900 Sobic004G034300 Sobic004G034300 Sobic010G178600--Sobic004G034300 Sobic010G178600--Sobic002G070600 Sobic010G178600--Sobic008G072200 Sobic010G178600--Sobic003G134800 Sobic010G178600--Sobic004G336300 Sobic010G178600--Sobic001G117800 Sobic010G178600--Sobic003G029600 Sobic001G117800--Sobic003G029600 Sobic001G117800--Sobic002G070600 Sobic001G117800--Sobic009G118900 Sobic002G340900 Sobic002G340900 Sobic001G117800--Sobic002G340900 Sobic001G474400 Sobic001G474400 Sobic001G117800--Sobic001G474400 Sobic001G117800--Sobic008G072200 Sobic003G314700 Sobic003G314700 Sobic001G117800--Sobic003G314700 Sobic009G120500 Sobic009G120500 Sobic001G117800--Sobic009G120500 Sobic001G437400 Sobic001G437400 Sobic001G117800--Sobic001G437400 Sobic005G163700 Sobic005G163700 Sobic002G423500--Sobic005G163700 Sobic004G047200 Sobic004G047200 Sobic002G423500--Sobic004G047200 Sobic002G014400 Sobic002G014400 Sobic002G423500--Sobic002G014400 Sobic001G460500 Sobic001G460500 Sobic002G423500--Sobic001G460500 Sobic004G326600 Sobic004G326600 Sobic002G423500--Sobic004G326600 Sobic004G215700 Sobic004G215700 Sobic002G423500--Sobic004G215700 Sobic001G522000 Sobic001G522000 Sobic002G423500--Sobic001G522000 Sobic006G041100 Sobic006G041100 Sobic002G423500--Sobic006G041100 Sobic001G467100 Sobic001G467100 Sobic002G423500--Sobic001G467100 Sobic001G220900--Sobic001G490500 Sobic001G220900--Sobic002G141700 Sobic001G281900 Sobic001G281900 Sobic001G220900--Sobic001G281900 Sobic008G151500 Sobic008G151500 Sobic001G220900--Sobic008G151500 Sobic001G145500 Sobic001G145500 Sobic001G220900--Sobic001G145500 Sobic001G220900--Sobic001G443200 Sobic001G220900--Sobic003G134800 Sobic003G009300 Sobic003G009300 Sobic001G220900--Sobic003G009300 Sobic001G220900--Sobic001G077900 Sobic002G160700 Sobic002G160700 Sobic001G151600--Sobic002G160700 Sobic003G397900 Sobic003G397900 Sobic001G151600--Sobic003G397900 Sobic006G265600 Sobic006G265600 Sobic001G151600--Sobic006G265600 Sobic001G151600--Sobic001G474400 Sobic001G151600--Sobic002G070600 Sobic009G003700 Sobic009G003700 Sobic001G151600--Sobic009G003700 Sobic004G151200 Sobic004G151200 Sobic001G151600--Sobic004G151200 Sobic002G199400 Sobic002G199400 Sobic001G151600--Sobic002G199400 Sobic001G151600--Sobic001G117800 Sobic003G143700--Sobic003G134800 Sobic002G313600 Sobic002G313600 Sobic003G143700--Sobic002G313600 Sobic003G143700--Sobic001G281900 Sobic004G082900 Sobic004G082900 Sobic003G143700--Sobic004G082900 Sobic007G044400 Sobic007G044400 Sobic003G143700--Sobic007G044400 Sobic001G109300 Sobic001G109300 Sobic003G143700--Sobic001G109300 Sobic002G177700 Sobic002G177700 Sobic003G143700--Sobic002G177700 Sobic001G196100 Sobic001G196100 Sobic003G143700--Sobic001G196100 Sobic006G252200 Sobic006G252200 Sobic003G143700--Sobic006G252200
Octagon: transcription factors


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