Gene annotation
Transcriptome id Sobic.003G143700.1,Sobic.003G143700.2
Synonym Sb03g012420, ACLB-1
Functional annotation ATP-citrate synthase subunit 1, putative, expressed
UniProt A0A1B6Q3C2
Pfam PF00549 PF00285
Panther DB PTHR23118 PTHR23118:SF3
NCBI CDD -
KEGG Orthology K01648; ATP citrate (pro-S)-lyase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT3G06650 : ATP-citrate lyase B-1
RAP-DB (Rice) LOC_Os01g19450.1 : ATP-citrate synthase subunit 1, putative, expressed
MaizeGDB (Corn) Zm00025a024277 , Zm00025a029211 , Zm00025a036114 , Zm00025a036514
Brachypodium KQK04070
Barley HORVU7Hr1G095680.9 , HORVU7Hr1G095680.8 , HORVU7Hr1G095680.5 , HORVU7Hr1G095680.4 , HORVU7Hr1G095680.7 , HORVU7Hr1G095680.6 , HORVU7Hr1G095680.1 , HORVU7Hr1G095680.3 , HORVU7Hr1G095680.2 , HORVU3Hr1G040360.1 , HORVU3Hr1G040360.2 , HORVU3Hr1G040360.3 , HORVU3Hr1G040360.4 , HORVU3Hr1G040360.5 , HORVU3Hr1G040360.6 , HORVU3Hr1G040360.7 , HORVU3Hr1G040360.8 , HORVU3Hr1G040360.9 , HORVU7Hr1G095680.19 , HORVU7Hr1G095680.18 , HORVU7Hr1G095680.11 , HORVU7Hr1G095680.10 , HORVU7Hr1G095680.13 , HORVU7Hr1G095680.12 , HORVU7Hr1G095680.15 , HORVU7Hr1G095680.14 , HORVU7Hr1G095680.17 , HORVU7Hr1G095680.16 , HORVU3Hr1G040360.12 , HORVU3Hr1G040360.13 , HORVU3Hr1G040360.10 , HORVU3Hr1G040360.11 , HORVU3Hr1G040360.16 , HORVU3Hr1G040360.17 , HORVU3Hr1G040360.14 , HORVU3Hr1G040360.15
Wheat TraesCS3B02G511600 , TraesCS3A02G193900 , TraesCS7B02G309200 , TraesCS3B02G221800 , TraesCS3B02G221800 , TraesCS3D02G195700 , TraesCS7D02G403000 , TraesCS7D02G403000 , TraesCS7A02G409800 , TraesCS7A02G409800 , TraesCS7A02G409800 , TraesCS7A02G409800 , TraesCS7D02G403000
Populus PNT16531 , PNT16533 , PNT16532 , PNT23898 , PNT23899 , PNT23896 , PNT23897 , PNT23894 , PNT23895 , PNT23892 , PNT23893


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cDNA sequences
Sobic.003G143700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G134800 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
2 Sobic.002G313600 src homology-3 domain protein 3, putative, expressed -
3 Sobic.001G281900 miro, putative, expressed K07977: Arf/Sar family, other
4 Sobic.004G082900 26S protease regulatory subunit, putative, expressed K03064: PSMC6, 26S proteasome regulatory subunit T4
5 Sobic.007G044400 MSP domain containing protein, expressed -
6 Sobic.001G109300 adenylyl cyclase-associated protein, putative, expressed K17261: CAP1_2, adenylyl cyclase-associated protein
7 Sobic.002G177700 acetyltransferase type B catalytic subunit, putative, expressed K11303: HAT1, histone acetyltransferase 1
8 Sobic.001G196100 src homology-3 domain protein 3, putative, expressed -
9 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
10 Sobic.003G348800 NAD dependent epimerase/dehydratase family domain containing protein, expressed K08678: UXS1, UDP-glucuronate decarboxylase
11 Sobic.001G108600 SEC14 cytosolic factor family protein, putative, expressed -
12 Sobic.009G067000 DnaK family protein, putative, expressed K09489: heat shock 70kDa protein 4
13 Sobic.008G150300 Lg106, putative, expressed -
14 Sobic.001G108400 LRR receptor-like protein kinase, putative, expressed -
15 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
16 Sobic.001G230100 3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
17 Sobic.001G007600 GTPase-activating protein, putative, expressed K12493: ADP-ribosylation factor GTPase-activating protein 2/3
18 Sobic.002G141700 unc-50, putative, expressed -
19 Sobic.004G282700 synthase, putative, expressed K12451: 3,5-epimerase/4-reductase
20 Sobic.001G338400 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase


Gene co-expression network
sample Sobic003G143700 Sobic003G143700 Sobic003G134800 Sobic003G134800 Sobic003G143700--Sobic003G134800 Sobic002G313600 Sobic002G313600 Sobic003G143700--Sobic002G313600 Sobic001G281900 Sobic001G281900 Sobic003G143700--Sobic001G281900 Sobic004G082900 Sobic004G082900 Sobic003G143700--Sobic004G082900 Sobic007G044400 Sobic007G044400 Sobic003G143700--Sobic007G044400 Sobic001G109300 Sobic001G109300 Sobic003G143700--Sobic001G109300 Sobic002G177700 Sobic002G177700 Sobic003G143700--Sobic002G177700 Sobic001G196100 Sobic001G196100 Sobic003G143700--Sobic001G196100 Sobic006G252200 Sobic006G252200 Sobic003G143700--Sobic006G252200 Sobic002G070600 Sobic002G070600 Sobic003G134800--Sobic002G070600 Sobic008G072200 Sobic008G072200 Sobic003G134800--Sobic008G072200 Sobic002G141700 Sobic002G141700 Sobic003G134800--Sobic002G141700 Sobic010G178600 Sobic010G178600 Sobic003G134800--Sobic010G178600 Sobic001G117800 Sobic001G117800 Sobic003G134800--Sobic001G117800 Sobic002G423500 Sobic002G423500 Sobic003G134800--Sobic002G423500 Sobic001G220900 Sobic001G220900 Sobic003G134800--Sobic001G220900 Sobic001G151600 Sobic001G151600 Sobic003G134800--Sobic001G151600 Sobic003G134800--Sobic003G143700 Sobic001G116000 Sobic001G116000 Sobic002G313600--Sobic001G116000 Sobic002G313600--Sobic007G044400 Sobic002G313600--Sobic001G196100 Sobic002G313600--Sobic003G134800 Sobic001G026600 Sobic001G026600 Sobic002G313600--Sobic001G026600 Sobic001G108400 Sobic001G108400 Sobic002G313600--Sobic001G108400 Sobic001G530800 Sobic001G530800 Sobic002G313600--Sobic001G530800 Sobic002G313600--Sobic001G281900 Sobic003G017500 Sobic003G017500 Sobic002G313600--Sobic003G017500 Sobic003G330500 Sobic003G330500 Sobic001G281900--Sobic003G330500 Sobic005G105500 Sobic005G105500 Sobic001G281900--Sobic005G105500 Sobic008G150300 Sobic008G150300 Sobic001G281900--Sobic008G150300 Sobic001G281900--Sobic006G252200 Sobic001G281900--Sobic001G196100 Sobic001G458700 Sobic001G458700 Sobic001G281900--Sobic001G458700 Sobic007G176200 Sobic007G176200 Sobic001G281900--Sobic007G176200 Sobic001G338400 Sobic001G338400 Sobic001G281900--Sobic001G338400 Sobic001G096100 Sobic001G096100 Sobic001G281900--Sobic001G096100 Sobic004G082900--Sobic006G252200 Sobic001G283200 Sobic001G283200 Sobic004G082900--Sobic001G283200 Sobic004G082900--Sobic001G458700 Sobic004G010900 Sobic004G010900 Sobic004G082900--Sobic004G010900 Sobic004G082900--Sobic007G176200 Sobic004G082900--Sobic005G105500 Sobic001G145500 Sobic001G145500 Sobic004G082900--Sobic001G145500 Sobic009G149500 Sobic009G149500 Sobic004G082900--Sobic009G149500 Sobic001G444300 Sobic001G444300 Sobic004G082900--Sobic001G444300 Sobic007G044400--Sobic001G196100 Sobic009G189200 Sobic009G189200 Sobic007G044400--Sobic009G189200 Sobic007G044400--Sobic001G116000 Sobic007G044400--Sobic001G026600 Sobic007G044400--Sobic002G313600 Sobic006G102900 Sobic006G102900 Sobic007G044400--Sobic006G102900 Sobic009G059500 Sobic009G059500 Sobic007G044400--Sobic009G059500 Sobic002G186900 Sobic002G186900 Sobic007G044400--Sobic002G186900 Sobic007G183800 Sobic007G183800 Sobic007G044400--Sobic007G183800 Sobic001G109300--Sobic007G176200 Sobic009G139800 Sobic009G139800 Sobic001G109300--Sobic009G139800 Sobic001G109300--Sobic006G252200 Sobic001G010700 Sobic001G010700 Sobic001G109300--Sobic001G010700 Sobic003G428200 Sobic003G428200 Sobic001G109300--Sobic003G428200 Sobic001G109300--Sobic003G330500 Sobic001G109300--Sobic001G281900 Sobic001G109300--Sobic001G458700 Sobic009G067000 Sobic009G067000 Sobic001G109300--Sobic009G067000 Sobic002G177700--Sobic007G176200 Sobic002G177700--Sobic007G044400 Sobic009G104100 Sobic009G104100 Sobic002G177700--Sobic009G104100 Sobic003G261800 Sobic003G261800 Sobic002G177700--Sobic003G261800 Sobic002G177700--Sobic006G252200 Sobic007G004200 Sobic007G004200 Sobic002G177700--Sobic007G004200 Sobic001G542900 Sobic001G542900 Sobic002G177700--Sobic001G542900 Sobic006G126000 Sobic006G126000 Sobic002G177700--Sobic006G126000 Sobic010G040900 Sobic010G040900 Sobic002G177700--Sobic010G040900 Sobic001G196100--Sobic001G116000 Sobic001G196100--Sobic007G044400 Sobic001G196100--Sobic001G281900 Sobic001G035400 Sobic001G035400 Sobic001G196100--Sobic001G035400 Sobic001G418000 Sobic001G418000 Sobic001G196100--Sobic001G418000 Sobic002G087000 Sobic002G087000 Sobic001G196100--Sobic002G087000 Sobic003G319000 Sobic003G319000 Sobic001G196100--Sobic003G319000 Sobic003G322300 Sobic003G322300 Sobic001G196100--Sobic003G322300 Sobic001G196100--Sobic001G530800 Sobic006G252200--Sobic007G176200 Sobic006G252200--Sobic001G458700 Sobic004G224900 Sobic004G224900 Sobic006G252200--Sobic004G224900 Sobic006G252200--Sobic001G010700 Sobic006G252200--Sobic003G330500 Sobic002G428200 Sobic002G428200 Sobic006G252200--Sobic002G428200 Sobic004G138800 Sobic004G138800 Sobic006G252200--Sobic004G138800 Sobic006G252200--Sobic001G283200 Sobic006G252200--Sobic001G096100
Octagon: transcription factors


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