Gene annotation
Transcriptome id Sobic.004G054200.1
Synonym Sb04g004600
Functional annotation avr9/Cf-9 rapidly elicited protein 137, putative, expressed
UniProt C5XW27
Pfam PF11961 PF05003
Panther DB PTHR31371 PTHR31371:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G23160 : Protein of unknown function (DUF668)
RAP-DB (Rice) LOC_Os04g08764.1 : avr9/Cf-9 rapidly elicited protein 137, putative, expressed
MaizeGDB (Corn) Zm00025a033739 , Zm00025a012416 , Zm00025a019068 , Zm00025a041352
Brachypodium PNT60493 , PNT60495 , PNT60494 , KQJ81439
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G054200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G000800 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
2 Sobic.010G229000 "domain confirmed by Pfam database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor, putative, expressed -
3 Sobic.003G432900 RNA recognition motif containing protein, putative, expressed -
4 Sobic.004G053300 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
5 Sobic.008G086200 expressed protein -
6 Sobic.003G277900 "D61(Ortholog in rice:Morinaka et al., 2006(PubMedID : 31659871)@systemin receptor SR160 precursor, putative, expressed K13415: protein brassinosteroid insensitive 1
7 Sobic.003G445900 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed -
8 Sobic.003G347300 TBC domain containing protein, expressed -
9 Sobic.001G537300 Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed K09338: homeobox-leucine zipper protein
10 Sobic.003G424950 - K14508: regulatory protein NPR1
11 Sobic.006G248300 "Lypoxygenase, probably induced by oxidative stress, up-regulated under severe drought stress"(PubMedID : 24655390)@lipoxygenase, putative, expressed K15718: linoleate 9S-lipoxygenase
12 Sobic.004G006700 tetratricopeptide repeat domain containing protein, expressed -
13 Sobic.004G227500 WD-40 repeat family protein, putative, expressed -
14 Sobic.002G316500 GRAS family transcription factor domain containing protein, expressed -
15 Sobic.010G189600 MLO domain containing protein, putative, expressed K08472: mlo protein
16 Sobic.004G246400 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
17 Sobic.002G348000 STE_PAK_Ste20_Slob_Wnk.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase
18 Sobic.001G021500 CESA5 - cellulose synthase, expressed K10999: cellulose synthase A
19 Sobic.002G162000 - -
20 Sobic.008G149650 - -


Gene co-expression network
sample Sobic004G054200 Sobic004G054200 Sobic008G000800 Sobic008G000800 Sobic004G054200--Sobic008G000800 Sobic010G229000 Sobic010G229000 Sobic004G054200--Sobic010G229000 Sobic003G432900 Sobic003G432900 Sobic004G054200--Sobic003G432900 Sobic004G053300 Sobic004G053300 Sobic004G054200--Sobic004G053300 Sobic008G086200 Sobic008G086200 Sobic004G054200--Sobic008G086200 Sobic003G277900 Sobic003G277900 Sobic004G054200--Sobic003G277900 Sobic003G445900 Sobic003G445900 Sobic004G054200--Sobic003G445900 Sobic003G347300 Sobic003G347300 Sobic004G054200--Sobic003G347300 Sobic001G537300 Sobic001G537300 Sobic004G054200--Sobic001G537300 Sobic008G000800--Sobic010G229000 Sobic008G000800--Sobic004G053300 Sobic010G139301 Sobic010G139301 Sobic008G000800--Sobic010G139301 Sobic006G068400 Sobic006G068400 Sobic008G000800--Sobic006G068400 Sobic008G000800--Sobic003G432900 Sobic009G013100 Sobic009G013100 Sobic008G000800--Sobic009G013100 Sobic004G227500 Sobic004G227500 Sobic008G000800--Sobic004G227500 Sobic001G305400 Sobic001G305400 Sobic008G000800--Sobic001G305400 Sobic008G000800--Sobic003G277900 Sobic010G229000--Sobic008G000800 Sobic003G323900 Sobic003G323900 Sobic010G229000--Sobic003G323900 Sobic010G229000--Sobic009G013100 Sobic010G229000--Sobic010G139301 Sobic010G229000--Sobic006G068400 Sobic010G229000--Sobic004G054200 Sobic010G229000--Sobic004G227500 Sobic002G316500 Sobic002G316500 Sobic010G229000--Sobic002G316500 Sobic002G056100 Sobic002G056100 Sobic010G229000--Sobic002G056100 Sobic004G246400 Sobic004G246400 Sobic003G432900--Sobic004G246400 Sobic003G374500 Sobic003G374500 Sobic003G432900--Sobic003G374500 Sobic003G432900--Sobic008G000800 Sobic003G432900--Sobic004G054200 Sobic003G432900--Sobic003G445900 Sobic003G432900--Sobic010G229000 Sobic001G278600 Sobic001G278600 Sobic003G432900--Sobic001G278600 Sobic008G065400 Sobic008G065400 Sobic003G432900--Sobic008G065400 Sobic010G101700 Sobic010G101700 Sobic003G432900--Sobic010G101700 Sobic004G053300--Sobic003G277900 Sobic004G053300--Sobic008G000800 Sobic005G159600 Sobic005G159600 Sobic004G053300--Sobic005G159600 Sobic008G099500 Sobic008G099500 Sobic004G053300--Sobic008G099500 Sobic001G494100 Sobic001G494100 Sobic004G053300--Sobic001G494100 Sobic004G053300--Sobic003G445900 Sobic004G053300--Sobic004G227500 Sobic004G053300--Sobic004G054200 Sobic004G053300--Sobic008G086200 Sobic004G225700 Sobic004G225700 Sobic008G086200--Sobic004G225700 Sobic009G175200 Sobic009G175200 Sobic008G086200--Sobic009G175200 Sobic003G174900 Sobic003G174900 Sobic008G086200--Sobic003G174900 Sobic003G375000 Sobic003G375000 Sobic008G086200--Sobic003G375000 Sobic009G123500 Sobic009G123500 Sobic008G086200--Sobic009G123500 Sobic008G190500 Sobic008G190500 Sobic008G086200--Sobic008G190500 Sobic004G289500 Sobic004G289500 Sobic008G086200--Sobic004G289500 Sobic009G164900 Sobic009G164900 Sobic008G086200--Sobic009G164900 Sobic010G118700 Sobic010G118700 Sobic008G086200--Sobic010G118700 Sobic003G277900--Sobic004G053300 Sobic003G277900--Sobic005G159600 Sobic003G277900--Sobic001G494100 Sobic006G046600 Sobic006G046600 Sobic003G277900--Sobic006G046600 Sobic003G277900--Sobic008G000800 Sobic003G277900--Sobic008G086200 Sobic003G277900--Sobic009G123500 Sobic001G315400 Sobic001G315400 Sobic003G277900--Sobic001G315400 Sobic007G187400 Sobic007G187400 Sobic003G277900--Sobic007G187400 Sobic003G445900--Sobic008G000800 Sobic003G445900--Sobic004G053300 Sobic002G313500 Sobic002G313500 Sobic003G445900--Sobic002G313500 Sobic010G017800 Sobic010G017800 Sobic003G445900--Sobic010G017800 Sobic007G191100 Sobic007G191100 Sobic003G445900--Sobic007G191100 Sobic003G445900--Sobic003G432900 Sobic002G288000 Sobic002G288000 Sobic003G445900--Sobic002G288000 Sobic008G139700 Sobic008G139700 Sobic003G445900--Sobic008G139700 Sobic003G346000 Sobic003G346000 Sobic003G445900--Sobic003G346000 Sobic002G218700 Sobic002G218700 Sobic003G347300--Sobic002G218700 Sobic001G021500 Sobic001G021500 Sobic003G347300--Sobic001G021500 Sobic002G033700 Sobic002G033700 Sobic003G347300--Sobic002G033700 Sobic009G126000 Sobic009G126000 Sobic003G347300--Sobic009G126000 Sobic006G254500 Sobic006G254500 Sobic003G347300--Sobic006G254500 Sobic009G030300 Sobic009G030300 Sobic003G347300--Sobic009G030300 Sobic009G013700 Sobic009G013700 Sobic003G347300--Sobic009G013700 Sobic003G347300--Sobic009G123500 Sobic003G347300--Sobic008G086200 Sobic001G450800 Sobic001G450800 Sobic001G537300--Sobic001G450800 Sobic005G079700 Sobic005G079700 Sobic001G537300--Sobic005G079700 Sobic003G361300 Sobic003G361300 Sobic001G537300--Sobic003G361300 Sobic003G399000 Sobic003G399000 Sobic001G537300--Sobic003G399000 Sobic001G537300--Sobic004G054200 Sobic002G239900 Sobic002G239900 Sobic001G537300--Sobic002G239900 Sobic001G157400 Sobic001G157400 Sobic001G537300--Sobic001G157400 Sobic010G033700 Sobic010G033700 Sobic001G537300--Sobic010G033700 Sobic002G136800 Sobic002G136800 Sobic001G537300--Sobic002G136800
Octagon: transcription factors


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