Gene annotation
Transcriptome id Sobic.004G006700.1
Synonym Sb04g000780
Functional annotation tetratricopeptide repeat domain containing protein, expressed
UniProt C5XRM1
Pfam PF13374 PF13424
Panther DB PTHR19959 PTHR19959:SF158
NCBI CDD KOG1840; Kinesin light chain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G10840 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os02g01960.1 : tetratricopeptide repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a035079 , Zm00025a018664
Brachypodium PNT71865
Barley HORVU6Hr1G004990.2 , HORVU6Hr1G004990.1
Wheat TraesCS6D02G030400 , TraesCS6A02G026600 , TraesCS6A02G026600 , TraesCS6B02G037200
Populus -


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cDNA sequences
Sobic.004G006700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G134100 glycosyltransferase, putative, expressed -
2 Sobic.010G224900 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
3 Sobic.001G069800 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
4 Sobic.001G215500 expressed protein -
5 Sobic.009G026200 IQ calmodulin-binding motif domain containing protein, expressed -
6 Sobic.002G427300 protein phosphotase protein, putative, expressed -
7 Sobic.004G051300 galactosyltransferase, putative, expressed -
8 Sobic.009G123500 TKL_IRAK_CR4L.5 - The CR4L subfamily has homology with Crinkly4, expressed -
9 Sobic.002G393200 CAMK_CAMK_like.36 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
10 Sobic.003G151300 serine/threonine-protein kinase, putative, expressed -
11 Sobic.005G159600 lymphoid organ expressed yellow head virus receptor protein, putative, expressed -
12 Sobic.001G366800 alpha-N-acetylglucosaminidase, putative, expressed K01205: alpha-N-acetylglucosaminidase
13 Sobic.006G281500 prenylcysteine oxidase 1 precursor, putative, expressed K05906: PCYOX1, prenylcysteine oxidase / farnesylcysteine lyase
14 Sobic.005G204700 polygalacturonase, putative, expressed -
15 Sobic.003G103000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein kinase domain containing protein, expressed -
16 Sobic.003G277900 "D61(Ortholog in rice:Morinaka et al., 2006(PubMedID : 31659871)@systemin receptor SR160 precursor, putative, expressed K13415: protein brassinosteroid insensitive 1
17 Sobic.010G017800 LMBR1 integral membrane protein, putative, expressed K14617: LMBR1 domain-containing protein 1
18 Sobic.008G086200 expressed protein -
19 Sobic.008G190500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plasma membrane ATPase, putative, expressed K01535: PMA1, H+-transporting ATPase
20 Sobic.004G308100 uncharacterized Cys-rich domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic004G006700 Sobic004G006700 Sobic004G134100 Sobic004G134100 Sobic004G006700--Sobic004G134100 Sobic010G224900 Sobic010G224900 Sobic004G006700--Sobic010G224900 Sobic001G069800 Sobic001G069800 Sobic004G006700--Sobic001G069800 Sobic001G215500 Sobic001G215500 Sobic004G006700--Sobic001G215500 Sobic009G026200 Sobic009G026200 Sobic004G006700--Sobic009G026200 Sobic002G427300 Sobic002G427300 Sobic004G006700--Sobic002G427300 Sobic004G051300 Sobic004G051300 Sobic004G006700--Sobic004G051300 Sobic009G123500 Sobic009G123500 Sobic004G006700--Sobic009G123500 Sobic002G393200 Sobic002G393200 Sobic004G006700--Sobic002G393200 Sobic004G134100--Sobic009G026200 Sobic010G242900 Sobic010G242900 Sobic004G134100--Sobic010G242900 Sobic004G134100--Sobic001G069800 Sobic004G134100--Sobic004G006700 Sobic005G159600 Sobic005G159600 Sobic004G134100--Sobic005G159600 Sobic010G138500 Sobic010G138500 Sobic004G134100--Sobic010G138500 Sobic001G215900 Sobic001G215900 Sobic004G134100--Sobic001G215900 Sobic001G366800 Sobic001G366800 Sobic004G134100--Sobic001G366800 Sobic003G151300 Sobic003G151300 Sobic004G134100--Sobic003G151300 Sobic010G224900--Sobic003G151300 Sobic001G107200 Sobic001G107200 Sobic010G224900--Sobic001G107200 Sobic010G224900--Sobic004G006700 Sobic010G224900--Sobic009G026200 Sobic005G211200 Sobic005G211200 Sobic010G224900--Sobic005G211200 Sobic002G348000 Sobic002G348000 Sobic010G224900--Sobic002G348000 Sobic010G224900--Sobic001G215500 Sobic003G128000 Sobic003G128000 Sobic010G224900--Sobic003G128000 Sobic010G224900--Sobic001G069800 Sobic001G069800--Sobic009G026200 Sobic004G086100 Sobic004G086100 Sobic001G069800--Sobic004G086100 Sobic004G067000 Sobic004G067000 Sobic001G069800--Sobic004G067000 Sobic001G069800--Sobic004G134100 Sobic001G420700 Sobic001G420700 Sobic001G069800--Sobic001G420700 Sobic001G069800--Sobic004G006700 Sobic001G069800--Sobic003G151300 Sobic001G467000 Sobic001G467000 Sobic001G069800--Sobic001G467000 Sobic008G139700 Sobic008G139700 Sobic001G069800--Sobic008G139700 Sobic009G207100 Sobic009G207100 Sobic001G215500--Sobic009G207100 Sobic001G215500--Sobic004G006700 Sobic008G093200 Sobic008G093200 Sobic001G215500--Sobic008G093200 Sobic001G215500--Sobic010G224900 Sobic004G182500 Sobic004G182500 Sobic001G215500--Sobic004G182500 Sobic004G027000 Sobic004G027000 Sobic001G215500--Sobic004G027000 Sobic001G202400 Sobic001G202400 Sobic001G215500--Sobic001G202400 Sobic004G225300 Sobic004G225300 Sobic001G215500--Sobic004G225300 Sobic006G195400 Sobic006G195400 Sobic001G215500--Sobic006G195400 Sobic009G026200--Sobic003G151300 Sobic009G026200--Sobic004G134100 Sobic009G026200--Sobic001G069800 Sobic008G174800 Sobic008G174800 Sobic009G026200--Sobic008G174800 Sobic009G026200--Sobic010G224900 Sobic008G008400 Sobic008G008400 Sobic009G026200--Sobic008G008400 Sobic009G026200--Sobic004G051300 Sobic009G026200--Sobic004G006700 Sobic001G230900 Sobic001G230900 Sobic009G026200--Sobic001G230900 Sobic006G208400 Sobic006G208400 Sobic002G427300--Sobic006G208400 Sobic001G119800 Sobic001G119800 Sobic002G427300--Sobic001G119800 Sobic006G281000 Sobic006G281000 Sobic002G427300--Sobic006G281000 Sobic006G140600 Sobic006G140600 Sobic002G427300--Sobic006G140600 Sobic010G085200 Sobic010G085200 Sobic002G427300--Sobic010G085200 Sobic002G427300--Sobic004G006700 Sobic003G314700 Sobic003G314700 Sobic002G427300--Sobic003G314700 Sobic001G460500 Sobic001G460500 Sobic002G427300--Sobic001G460500 Sobic001G036800 Sobic001G036800 Sobic002G427300--Sobic001G036800 Sobic001G099100 Sobic001G099100 Sobic004G051300--Sobic001G099100 Sobic002G118700 Sobic002G118700 Sobic004G051300--Sobic002G118700 Sobic009G125900 Sobic009G125900 Sobic004G051300--Sobic009G125900 Sobic002G075500 Sobic002G075500 Sobic004G051300--Sobic002G075500 Sobic009G026101 Sobic009G026101 Sobic004G051300--Sobic009G026101 Sobic002G276600 Sobic002G276600 Sobic004G051300--Sobic002G276600 Sobic009G079100 Sobic009G079100 Sobic004G051300--Sobic009G079100 Sobic010G090500 Sobic010G090500 Sobic004G051300--Sobic010G090500 Sobic009G063400 Sobic009G063400 Sobic004G051300--Sobic009G063400 Sobic008G086200 Sobic008G086200 Sobic009G123500--Sobic008G086200 Sobic009G123500--Sobic005G159600 Sobic003G277900 Sobic003G277900 Sobic009G123500--Sobic003G277900 Sobic003G347300 Sobic003G347300 Sobic009G123500--Sobic003G347300 Sobic008G190500 Sobic008G190500 Sobic009G123500--Sobic008G190500 Sobic009G123500--Sobic004G006700 Sobic001G435201 Sobic001G435201 Sobic009G123500--Sobic001G435201 Sobic010G118700 Sobic010G118700 Sobic009G123500--Sobic010G118700 Sobic004G053300 Sobic004G053300 Sobic009G123500--Sobic004G053300 Sobic008G148500 Sobic008G148500 Sobic002G393200--Sobic008G148500 Sobic006G254500 Sobic006G254500 Sobic002G393200--Sobic006G254500 Sobic005G204700 Sobic005G204700 Sobic002G393200--Sobic005G204700 Sobic004G152200 Sobic004G152200 Sobic002G393200--Sobic004G152200 Sobic002G161700 Sobic002G161700 Sobic002G393200--Sobic002G161700 Sobic003G131200 Sobic003G131200 Sobic002G393200--Sobic003G131200 Sobic009G206500 Sobic009G206500 Sobic002G393200--Sobic009G206500 Sobic002G143200 Sobic002G143200 Sobic002G393200--Sobic002G143200 Sobic006G267500 Sobic006G267500 Sobic002G393200--Sobic006G267500
Octagon: transcription factors


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