Gene annotation
Transcriptome id Sobic.001G069800.1
Synonym TUB8, Sb01g006310
Functional annotation tubulin/FtsZ domain containing protein, putative, expressed
UniProt C5WZ25
Pfam PF03953 PF00091
Panther DB PTHR11588 PTHR11588:SF146
NCBI CDD -
KEGG Orthology K07375; tubulin beta
Gene Ontology GO:0003924; GTPase activity GO:0007017microtubule-based process GO:0005874microtubule


Orthologs (automatic annotation)
TAIR AT5G23860 : tubulin beta 8
RAP-DB (Rice) LOC_Os03g56810.1 : tubulin/FtsZ domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a000132 , Zm00025a030432 , Zm00025a012119 , Zm00025a037439 , Zm00025a024856 , Zm00025a019054 , Zm00025a039825 , Zm00025a008433 , Zm00025a024200 , Zm00025a001989 , Zm00025a041941 , Zm00025a016660 , Zm00025a035181 , Zm00025a004646 , Zm00025a007533 , Zm00025a017188 , Zm00025a027156 , Zm00025a014491 , Zm00025a018766 , Zm00025a008427 , Zm00025a051791 , Zm00025a040093 , Zm00025a008163
Brachypodium KQJ93503 , KQK12908 , KQK17085 , KQK13880 , KQK24113 , KQK10219 , KQK06257 , KQK03976 , KQK05638
Barley HORVU3Hr1G078940.3 , HORVU3Hr1G078940.2 , HORVU3Hr1G078940.1 , HORVU3Hr1G078940.7 , HORVU3Hr1G078940.6 , HORVU3Hr1G078940.5 , HORVU3Hr1G078940.4 , HORVU1Hr1G068170.1 , HORVU1Hr1G068170.3 , HORVU1Hr1G068170.2 , HORVU0Hr1G026030.4 , HORVU0Hr1G026030.3 , HORVU0Hr1G026030.2 , HORVU7Hr1G059990.1 , HORVU1Hr1G064870.4 , HORVU1Hr1G064870.5 , HORVU1Hr1G064870.6 , HORVU1Hr1G064870.7 , HORVU1Hr1G064870.1 , HORVU1Hr1G064870.2 , HORVU1Hr1G064870.3 , HORVU1Hr1G064870.9 , HORVU4Hr1G087740.1 , HORVU4Hr1G087740.3 , HORVU4Hr1G087740.4 , HORVU4Hr1G002530.1 , HORVU4Hr1G002530.2 , HORVU4Hr1G002530.3 , HORVU4Hr1G002530.4 , HORVU4Hr1G002530.5 , HORVU4Hr1G002530.6 , HORVU4Hr1G087740.5 , HORVU4Hr1G087740.2 , HORVU5Hr1G100900.1 , HORVU5Hr1G100900.3 , HORVU5Hr1G100900.2 , HORVU5Hr1G100900.5 , HORVU5Hr1G100900.4 , HORVU5Hr1G100900.6 , HORVU7Hr1G107100.4 , HORVU7Hr1G107100.5 , HORVU7Hr1G107100.2 , HORVU7Hr1G107100.3 , HORVU7Hr1G107100.1 , HORVU4Hr1G002530.7 , HORVU6Hr1G027620.5 , HORVU6Hr1G027620.4 , HORVU6Hr1G027620.3 , HORVU6Hr1G027620.2 , HORVU6Hr1G027620.1
Wheat TraesCS4D02G015400 , TraesCS7A02G466600 , TraesCS4B02G017100 , TraesCS3B02G363500 , TraesCS6D02G130500 , TraesCS6D02G130500 , TraesCS4A02G296600 , TraesCS1B02G320800 , TraesCS1A02G309700 , TraesCS5A02G416400 , TraesCS5A02G416400 , TraesCS1D02G258800 , TraesCS1B02G269400 , TraesCS5D02G424100 , TraesCS1A02G437700 , TraesCS1A02G437700 , TraesCS6B02G169300 , TraesCS6B02G169300 , TraesCS4B02G366500 , TraesCS5A02G069700 , TraesCS5A02G069700 , TraesCS5A02G069700 , TraesCS3A02G333300 , TraesCS5B02G418700 , TraesCS5A02G069800 , TraesCS5A02G069800 , TraesCS5A02G069800 , TraesCS5A02G534300 , TraesCS5A02G069800 , TraesCS3D02G326900 , TraesCSU02G137900 , TraesCS1A02G258800 , TraesCS1A02G101000 , TraesCS1A02G101000 , TraesCS1D02G309200 , TraesCS7D02G454200 , TraesCS2A02G437800
Populus PNS98971 , PNT47370 , PNT29533 , PNT29532 , PNS97627 , PNS98995 , PNT29534 , PNT19456 , PNT19996 , PNT19997 , PNT19995


JBrowse

Open New Page


cDNA sequences
Sobic.001G069800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G026200 IQ calmodulin-binding motif domain containing protein, expressed -
2 Sobic.004G086100 tetratricopeptide repeat domain containing protein, expressed -
3 Sobic.004G067000 expressed protein -
4 Sobic.004G134100 glycosyltransferase, putative, expressed -
5 Sobic.001G420700 clathrin assembly protein, putative, expressed -
6 Sobic.004G006700 tetratricopeptide repeat domain containing protein, expressed -
7 Sobic.003G151300 serine/threonine-protein kinase, putative, expressed -
8 Sobic.001G467000 ADP-ribosylation factor, putative, expressed K07955: ADP-ribosylation factor-like protein 8
9 Sobic.008G139700 bromodomain associated family protein, expressed K14649: transcription initiation factor TFIID subunit 8
10 Sobic.006G213100 UDP-glucose Pyrophosphorylase(PubMedID : 26616172)@UTP--glucose-1-phosphate uridylyltransferase, putative, expressed K00972: UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylase
11 Sobic.008G136000 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
12 Sobic.010G224900 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
13 Sobic.006G098200 steroid nuclear receptor, ligand-binding, putative, expressed -
14 Sobic.008G188700 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
15 Sobic.004G247300 cysteine-rich repeat secretory protein precursor, putative, expressed -
16 Sobic.001G330000 hydrolase, alpha/beta fold family domain containing protein, expressed -
17 Sobic.001G194000 DEFL6 - Defensin and Defensin-like DEFL family, expressed -
18 Sobic.004G298500 cyclin, putative, expressed -
19 Sobic.010G105600 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
20 Sobic.001G294000 LOL3, putative, expressed -


Gene co-expression network
sample Sobic001G069800 Sobic001G069800 Sobic009G026200 Sobic009G026200 Sobic001G069800--Sobic009G026200 Sobic004G086100 Sobic004G086100 Sobic001G069800--Sobic004G086100 Sobic004G067000 Sobic004G067000 Sobic001G069800--Sobic004G067000 Sobic004G134100 Sobic004G134100 Sobic001G069800--Sobic004G134100 Sobic001G420700 Sobic001G420700 Sobic001G069800--Sobic001G420700 Sobic004G006700 Sobic004G006700 Sobic001G069800--Sobic004G006700 Sobic003G151300 Sobic003G151300 Sobic001G069800--Sobic003G151300 Sobic001G467000 Sobic001G467000 Sobic001G069800--Sobic001G467000 Sobic008G139700 Sobic008G139700 Sobic001G069800--Sobic008G139700 Sobic009G026200--Sobic003G151300 Sobic009G026200--Sobic004G134100 Sobic009G026200--Sobic001G069800 Sobic008G174800 Sobic008G174800 Sobic009G026200--Sobic008G174800 Sobic010G224900 Sobic010G224900 Sobic009G026200--Sobic010G224900 Sobic008G008400 Sobic008G008400 Sobic009G026200--Sobic008G008400 Sobic004G051300 Sobic004G051300 Sobic009G026200--Sobic004G051300 Sobic009G026200--Sobic004G006700 Sobic001G230900 Sobic001G230900 Sobic009G026200--Sobic001G230900 Sobic004G086100--Sobic001G069800 Sobic003G405700 Sobic003G405700 Sobic004G086100--Sobic003G405700 Sobic004G086100--Sobic004G067000 Sobic001G294000 Sobic001G294000 Sobic004G086100--Sobic001G294000 Sobic004G086100--Sobic001G420700 Sobic003G045400 Sobic003G045400 Sobic004G086100--Sobic003G045400 Sobic009G140700 Sobic009G140700 Sobic004G086100--Sobic009G140700 Sobic001G080000 Sobic001G080000 Sobic004G086100--Sobic001G080000 Sobic008G188700 Sobic008G188700 Sobic004G086100--Sobic008G188700 Sobic004G067000--Sobic001G069800 Sobic004G067000--Sobic004G086100 Sobic004G198000 Sobic004G198000 Sobic004G067000--Sobic004G198000 Sobic004G067000--Sobic004G134100 Sobic001G471900 Sobic001G471900 Sobic004G067000--Sobic001G471900 Sobic004G067000--Sobic008G008400 Sobic004G067000--Sobic009G026200 Sobic002G017300 Sobic002G017300 Sobic004G067000--Sobic002G017300 Sobic006G133600 Sobic006G133600 Sobic004G067000--Sobic006G133600 Sobic004G134100--Sobic009G026200 Sobic010G242900 Sobic010G242900 Sobic004G134100--Sobic010G242900 Sobic004G134100--Sobic001G069800 Sobic004G134100--Sobic004G006700 Sobic005G159600 Sobic005G159600 Sobic004G134100--Sobic005G159600 Sobic010G138500 Sobic010G138500 Sobic004G134100--Sobic010G138500 Sobic001G215900 Sobic001G215900 Sobic004G134100--Sobic001G215900 Sobic001G366800 Sobic001G366800 Sobic004G134100--Sobic001G366800 Sobic004G134100--Sobic003G151300 Sobic005G046100 Sobic005G046100 Sobic001G420700--Sobic005G046100 Sobic001G420700--Sobic008G188700 Sobic007G136700 Sobic007G136700 Sobic001G420700--Sobic007G136700 Sobic001G441600 Sobic001G441600 Sobic001G420700--Sobic001G441600 Sobic003G116700 Sobic003G116700 Sobic001G420700--Sobic003G116700 Sobic004G150400 Sobic004G150400 Sobic001G420700--Sobic004G150400 Sobic003G424400 Sobic003G424400 Sobic001G420700--Sobic003G424400 Sobic003G317200 Sobic003G317200 Sobic001G420700--Sobic003G317200 Sobic001G420700--Sobic001G069800 Sobic004G006700--Sobic004G134100 Sobic004G006700--Sobic010G224900 Sobic004G006700--Sobic001G069800 Sobic001G215500 Sobic001G215500 Sobic004G006700--Sobic001G215500 Sobic004G006700--Sobic009G026200 Sobic002G427300 Sobic002G427300 Sobic004G006700--Sobic002G427300 Sobic004G006700--Sobic004G051300 Sobic009G123500 Sobic009G123500 Sobic004G006700--Sobic009G123500 Sobic002G393200 Sobic002G393200 Sobic004G006700--Sobic002G393200 Sobic003G151300--Sobic009G026200 Sobic003G151300--Sobic008G008400 Sobic003G151300--Sobic008G174800 Sobic003G151300--Sobic010G224900 Sobic009G162500 Sobic009G162500 Sobic003G151300--Sobic009G162500 Sobic001G107200 Sobic001G107200 Sobic003G151300--Sobic001G107200 Sobic008G021900 Sobic008G021900 Sobic003G151300--Sobic008G021900 Sobic004G203900 Sobic004G203900 Sobic003G151300--Sobic004G203900 Sobic003G151300--Sobic004G134100 Sobic001G372000 Sobic001G372000 Sobic001G467000--Sobic001G372000 Sobic001G467000--Sobic003G045400 Sobic001G467000--Sobic004G150400 Sobic001G512600 Sobic001G512600 Sobic001G467000--Sobic001G512600 Sobic001G464100 Sobic001G464100 Sobic001G467000--Sobic001G464100 Sobic002G313500 Sobic002G313500 Sobic001G467000--Sobic002G313500 Sobic001G028400 Sobic001G028400 Sobic001G467000--Sobic001G028400 Sobic010G211300 Sobic010G211300 Sobic001G467000--Sobic010G211300 Sobic001G291100 Sobic001G291100 Sobic001G467000--Sobic001G291100 Sobic008G139700--Sobic002G313500 Sobic010G017800 Sobic010G017800 Sobic008G139700--Sobic010G017800 Sobic008G139700--Sobic001G080000 Sobic001G143500 Sobic001G143500 Sobic008G139700--Sobic001G143500 Sobic002G180000 Sobic002G180000 Sobic008G139700--Sobic002G180000 Sobic008G139700--Sobic003G045400 Sobic007G205000 Sobic007G205000 Sobic008G139700--Sobic007G205000 Sobic006G267300 Sobic006G267300 Sobic008G139700--Sobic006G267300 Sobic010G105600 Sobic010G105600 Sobic008G139700--Sobic010G105600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.