Gene annotation
Transcriptome id Sobic.004G086100.1
Synonym Sb04g007120
Functional annotation tetratricopeptide repeat domain containing protein, expressed
UniProt A0A194YNH6
Pfam PF13414
Panther DB PTHR26312 PTHR26312:SF71
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G65520 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os02g10940.1 : tetratricopeptide repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a019509
Brachypodium PNT66140 , PNT66138 , PNT66139
Barley HORVU6Hr1G037510.7 , HORVU6Hr1G037510.8 , HORVU6Hr1G037510.9 , HORVU6Hr1G037510.1 , HORVU6Hr1G037510.2 , HORVU6Hr1G037510.3 , HORVU6Hr1G037510.4 , HORVU6Hr1G037510.5 , HORVU6Hr1G037510.6 , HORVU6Hr1G037510.12 , HORVU6Hr1G037510.10 , HORVU6Hr1G037510.11
Wheat TraesCS6B02G209200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G069800 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
2 Sobic.003G405700 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
3 Sobic.004G067000 expressed protein -
4 Sobic.001G294000 LOL3, putative, expressed -
5 Sobic.001G420700 clathrin assembly protein, putative, expressed -
6 Sobic.003G045400 DNA-directed RNA polymerase II subunit RPB7, putative, expressed K03015: RPB7, DNA-directed RNA polymerase II subunit RPB7
7 Sobic.009G140700 PHD finger protein, putative, expressed -
8 Sobic.001G080000 expressed protein -
9 Sobic.008G188700 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
10 Sobic.001G467000 ADP-ribosylation factor, putative, expressed K07955: ADP-ribosylation factor-like protein 8
11 Sobic.003G101300 expressed protein -
12 Sobic.004G150400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
13 Sobic.004G305600 SKIP/SNW domain containing protein, expressed K06063: SNW1, SKIIP, SNW domain-containing protein 1
14 Sobic.010G105600 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
15 Sobic.007G126200 mitosis protein dim1, putative, expressed K12859: TXNL4A, U5 snRNP protein, DIM1 family
16 Sobic.004G134100 glycosyltransferase, putative, expressed -
17 Sobic.003G154700 stripe rust resistance protein Yr10, putative, expressed -
18 Sobic.001G464100 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
19 Sobic.001G307900 LYR motif containing protein, putative, expressed K18167: succinate dehydrogenase assembly factor 1
20 Sobic.003G024800 CGMC_GSK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2


Gene co-expression network
sample Sobic004G086100 Sobic004G086100 Sobic001G069800 Sobic001G069800 Sobic004G086100--Sobic001G069800 Sobic003G405700 Sobic003G405700 Sobic004G086100--Sobic003G405700 Sobic004G067000 Sobic004G067000 Sobic004G086100--Sobic004G067000 Sobic001G294000 Sobic001G294000 Sobic004G086100--Sobic001G294000 Sobic001G420700 Sobic001G420700 Sobic004G086100--Sobic001G420700 Sobic003G045400 Sobic003G045400 Sobic004G086100--Sobic003G045400 Sobic009G140700 Sobic009G140700 Sobic004G086100--Sobic009G140700 Sobic001G080000 Sobic001G080000 Sobic004G086100--Sobic001G080000 Sobic008G188700 Sobic008G188700 Sobic004G086100--Sobic008G188700 Sobic009G026200 Sobic009G026200 Sobic001G069800--Sobic009G026200 Sobic001G069800--Sobic004G086100 Sobic001G069800--Sobic004G067000 Sobic004G134100 Sobic004G134100 Sobic001G069800--Sobic004G134100 Sobic001G069800--Sobic001G420700 Sobic004G006700 Sobic004G006700 Sobic001G069800--Sobic004G006700 Sobic003G151300 Sobic003G151300 Sobic001G069800--Sobic003G151300 Sobic001G467000 Sobic001G467000 Sobic001G069800--Sobic001G467000 Sobic008G139700 Sobic008G139700 Sobic001G069800--Sobic008G139700 Sobic004G305600 Sobic004G305600 Sobic003G405700--Sobic004G305600 Sobic003G405700--Sobic001G080000 Sobic006G183000 Sobic006G183000 Sobic003G405700--Sobic006G183000 Sobic002G129000 Sobic002G129000 Sobic003G405700--Sobic002G129000 Sobic010G105600 Sobic010G105600 Sobic003G405700--Sobic010G105600 Sobic009G050700 Sobic009G050700 Sobic003G405700--Sobic009G050700 Sobic001G136900 Sobic001G136900 Sobic003G405700--Sobic001G136900 Sobic004G059000 Sobic004G059000 Sobic003G405700--Sobic004G059000 Sobic002G272600 Sobic002G272600 Sobic003G405700--Sobic002G272600 Sobic004G067000--Sobic001G069800 Sobic004G067000--Sobic004G086100 Sobic004G198000 Sobic004G198000 Sobic004G067000--Sobic004G198000 Sobic004G067000--Sobic004G134100 Sobic001G471900 Sobic001G471900 Sobic004G067000--Sobic001G471900 Sobic008G008400 Sobic008G008400 Sobic004G067000--Sobic008G008400 Sobic004G067000--Sobic009G026200 Sobic002G017300 Sobic002G017300 Sobic004G067000--Sobic002G017300 Sobic006G133600 Sobic006G133600 Sobic004G067000--Sobic006G133600 Sobic006G150600 Sobic006G150600 Sobic001G294000--Sobic006G150600 Sobic003G124800 Sobic003G124800 Sobic001G294000--Sobic003G124800 Sobic009G198500 Sobic009G198500 Sobic001G294000--Sobic009G198500 Sobic008G132800 Sobic008G132800 Sobic001G294000--Sobic008G132800 Sobic010G065400 Sobic010G065400 Sobic001G294000--Sobic010G065400 Sobic004G272300 Sobic004G272300 Sobic001G294000--Sobic004G272300 Sobic009G016201 Sobic009G016201 Sobic001G294000--Sobic009G016201 Sobic004G066800 Sobic004G066800 Sobic001G294000--Sobic004G066800 Sobic002G078400 Sobic002G078400 Sobic001G294000--Sobic002G078400 Sobic005G046100 Sobic005G046100 Sobic001G420700--Sobic005G046100 Sobic001G420700--Sobic008G188700 Sobic007G136700 Sobic007G136700 Sobic001G420700--Sobic007G136700 Sobic001G441600 Sobic001G441600 Sobic001G420700--Sobic001G441600 Sobic003G116700 Sobic003G116700 Sobic001G420700--Sobic003G116700 Sobic004G150400 Sobic004G150400 Sobic001G420700--Sobic004G150400 Sobic003G424400 Sobic003G424400 Sobic001G420700--Sobic003G424400 Sobic003G317200 Sobic003G317200 Sobic001G420700--Sobic003G317200 Sobic001G420700--Sobic001G069800 Sobic003G045400--Sobic001G467000 Sobic006G242300 Sobic006G242300 Sobic003G045400--Sobic006G242300 Sobic010G211300 Sobic010G211300 Sobic003G045400--Sobic010G211300 Sobic003G045400--Sobic008G139700 Sobic002G313500 Sobic002G313500 Sobic003G045400--Sobic002G313500 Sobic001G307900 Sobic001G307900 Sobic003G045400--Sobic001G307900 Sobic004G072800 Sobic004G072800 Sobic003G045400--Sobic004G072800 Sobic003G045400--Sobic009G140700 Sobic001G143500 Sobic001G143500 Sobic003G045400--Sobic001G143500 Sobic001G010600 Sobic001G010600 Sobic009G140700--Sobic001G010600 Sobic007G086500 Sobic007G086500 Sobic009G140700--Sobic007G086500 Sobic002G058300 Sobic002G058300 Sobic009G140700--Sobic002G058300 Sobic005G000800 Sobic005G000800 Sobic009G140700--Sobic005G000800 Sobic009G140700--Sobic003G045400 Sobic009G140700--Sobic008G139700 Sobic009G140700--Sobic010G211300 Sobic001G009800 Sobic001G009800 Sobic009G140700--Sobic001G009800 Sobic001G309100 Sobic001G309100 Sobic009G140700--Sobic001G309100 Sobic001G080000--Sobic003G405700 Sobic001G080000--Sobic008G139700 Sobic001G080000--Sobic002G272600 Sobic002G180000 Sobic002G180000 Sobic001G080000--Sobic002G180000 Sobic001G080000--Sobic010G105600 Sobic001G080000--Sobic001G143500 Sobic001G080000--Sobic001G010600 Sobic001G080000--Sobic003G045400 Sobic007G205000 Sobic007G205000 Sobic001G080000--Sobic007G205000 Sobic007G026100 Sobic007G026100 Sobic008G188700--Sobic007G026100 Sobic008G188700--Sobic001G420700 Sobic009G195900 Sobic009G195900 Sobic008G188700--Sobic009G195900 Sobic008G188700--Sobic010G105600 Sobic008G188700--Sobic004G086100 Sobic008G188700--Sobic003G405700 Sobic001G105100 Sobic001G105100 Sobic008G188700--Sobic001G105100 Sobic003G052400 Sobic003G052400 Sobic008G188700--Sobic003G052400 Sobic008G188700--Sobic009G050700
Octagon: transcription factors


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