Gene annotation
Transcriptome id Sobic.001G294000.1
Synonym ATMC1, MCP1B, Sb01g028720, ATMCPB1, LOL3, AMC1
Functional annotation LOL3, putative, expressed
UniProt C5WRG5
Pfam PF06943 PF00656
Panther DB PTHR31773 PTHR31773:SF11
NCBI CDD KOG1546; Metacaspase involved in regulation of apoptosis
KEGG Orthology -
Gene Ontology GO:0006508; proteolysis GO:0004197cysteine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT1G02170 : metacaspase 1
RAP-DB (Rice) LOC_Os03g27210.1 : LOL3, putative, expressed
MaizeGDB (Corn) Zm00025a051903 , Zm00025a003414
Brachypodium PNT67920
Barley HORVU1Hr1G055210.1 , HORVU1Hr1G055210.2
Wheat TraesCS1B02G229100 , TraesCS1B02G229100 , TraesCS1D02G218100 , TraesCS1D02G218100 , TraesCS1A02G215600
Populus -


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cDNA sequences
Sobic.001G294000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G150600 hydrolase, putative, expressed K14664: IAA-amino acid hydrolase
2 Sobic.003G124800 26S proteasome non-ATPase regulatory subunit 14, putative, expressed K03030: PSMD14, RPN11, 26S proteasome regulatory subunit N11
3 Sobic.009G198500 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
4 Sobic.008G132800 expressed protein -
5 Sobic.010G065400 X0001, putative, expressed -
6 Sobic.004G272300 expressed protein -
7 Sobic.009G016201 - K09481: SEC61B, protein transport protein SEC61 subunit beta
8 Sobic.004G066800 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
9 Sobic.002G078400 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
10 Sobic.004G172700 plant neutral invertase domain containing protein, expressed -
11 Sobic.006G262900 expressed protein -
12 Sobic.001G330000 hydrolase, alpha/beta fold family domain containing protein, expressed -
13 Sobic.003G329800 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
14 Sobic.003G386100 selenoprotein precursor, putative, expressed -
15 Sobic.004G224800 ubiquitin-conjugating enzyme, putative, expressed K10689: peroxin-4
16 Sobic.008G138600 SCARECROW, putative, expressed -
17 Sobic.001G136900 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
18 Sobic.001G439600 26S proteasome non-ATPase regulatory subunit 4, putative, expressed K03029: PSMD4, 26S proteasome regulatory subunit N10
19 Sobic.001G529000 THO complex subunit 7, putative, expressed K13176: THO complex subunit 7
20 Sobic.004G086100 tetratricopeptide repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic001G294000 Sobic001G294000 Sobic006G150600 Sobic006G150600 Sobic001G294000--Sobic006G150600 Sobic003G124800 Sobic003G124800 Sobic001G294000--Sobic003G124800 Sobic009G198500 Sobic009G198500 Sobic001G294000--Sobic009G198500 Sobic008G132800 Sobic008G132800 Sobic001G294000--Sobic008G132800 Sobic010G065400 Sobic010G065400 Sobic001G294000--Sobic010G065400 Sobic004G272300 Sobic004G272300 Sobic001G294000--Sobic004G272300 Sobic009G016201 Sobic009G016201 Sobic001G294000--Sobic009G016201 Sobic004G066800 Sobic004G066800 Sobic001G294000--Sobic004G066800 Sobic002G078400 Sobic002G078400 Sobic001G294000--Sobic002G078400 Sobic006G150600--Sobic003G124800 Sobic006G150600--Sobic001G294000 Sobic007G030700 Sobic007G030700 Sobic006G150600--Sobic007G030700 Sobic001G529000 Sobic001G529000 Sobic006G150600--Sobic001G529000 Sobic006G150600--Sobic009G198500 Sobic003G329800 Sobic003G329800 Sobic006G150600--Sobic003G329800 Sobic008G058300 Sobic008G058300 Sobic006G150600--Sobic008G058300 Sobic003G362400 Sobic003G362400 Sobic006G150600--Sobic003G362400 Sobic006G150600--Sobic008G132800 Sobic003G124800--Sobic009G198500 Sobic001G439600 Sobic001G439600 Sobic003G124800--Sobic001G439600 Sobic006G232200 Sobic006G232200 Sobic003G124800--Sobic006G232200 Sobic001G502200 Sobic001G502200 Sobic003G124800--Sobic001G502200 Sobic007G045600 Sobic007G045600 Sobic003G124800--Sobic007G045600 Sobic003G124800--Sobic001G529000 Sobic007G168600 Sobic007G168600 Sobic003G124800--Sobic007G168600 Sobic003G124800--Sobic006G150600 Sobic003G124800--Sobic004G066800 Sobic009G198500--Sobic004G272300 Sobic009G198500--Sobic003G124800 Sobic002G400000 Sobic002G400000 Sobic009G198500--Sobic002G400000 Sobic009G198500--Sobic007G168600 Sobic009G198500--Sobic002G078400 Sobic004G300900 Sobic004G300900 Sobic009G198500--Sobic004G300900 Sobic001G005900 Sobic001G005900 Sobic009G198500--Sobic001G005900 Sobic007G096700 Sobic007G096700 Sobic009G198500--Sobic007G096700 Sobic006G212100 Sobic006G212100 Sobic009G198500--Sobic006G212100 Sobic010G029400 Sobic010G029400 Sobic008G132800--Sobic010G029400 Sobic008G132800--Sobic002G078400 Sobic008G132800--Sobic009G016201 Sobic001G331900 Sobic001G331900 Sobic008G132800--Sobic001G331900 Sobic008G132800--Sobic004G066800 Sobic001G105100 Sobic001G105100 Sobic008G132800--Sobic001G105100 Sobic005G157200 Sobic005G157200 Sobic008G132800--Sobic005G157200 Sobic008G132800--Sobic010G065400 Sobic003G217100 Sobic003G217100 Sobic008G132800--Sobic003G217100 Sobic010G065400--Sobic002G078400 Sobic008G127500 Sobic008G127500 Sobic010G065400--Sobic008G127500 Sobic010G065400--Sobic008G132800 Sobic010G065400--Sobic001G502200 Sobic001G315500 Sobic001G315500 Sobic010G065400--Sobic001G315500 Sobic004G196300 Sobic004G196300 Sobic010G065400--Sobic004G196300 Sobic010G065400--Sobic003G362400 Sobic005G111100 Sobic005G111100 Sobic010G065400--Sobic005G111100 Sobic010G065400--Sobic009G198500 Sobic004G272300--Sobic009G198500 Sobic004G272300--Sobic004G300900 Sobic004G272300--Sobic001G005900 Sobic004G272300--Sobic007G168600 Sobic004G272300--Sobic002G078400 Sobic004G272300--Sobic003G124800 Sobic004G351500 Sobic004G351500 Sobic004G272300--Sobic004G351500 Sobic004G272300--Sobic002G400000 Sobic001G314500 Sobic001G314500 Sobic004G272300--Sobic001G314500 Sobic002G263800 Sobic002G263800 Sobic009G016201--Sobic002G263800 Sobic007G095400 Sobic007G095400 Sobic009G016201--Sobic007G095400 Sobic009G016201--Sobic008G132800 Sobic004G172700 Sobic004G172700 Sobic009G016201--Sobic004G172700 Sobic003G249800 Sobic003G249800 Sobic009G016201--Sobic003G249800 Sobic001G037000 Sobic001G037000 Sobic009G016201--Sobic001G037000 Sobic008G161000 Sobic008G161000 Sobic009G016201--Sobic008G161000 Sobic010G237000 Sobic010G237000 Sobic009G016201--Sobic010G237000 Sobic009G016201--Sobic010G029400 Sobic003G129800 Sobic003G129800 Sobic004G066800--Sobic003G129800 Sobic004G310300 Sobic004G310300 Sobic004G066800--Sobic004G310300 Sobic001G483100 Sobic001G483100 Sobic004G066800--Sobic001G483100 Sobic007G092100 Sobic007G092100 Sobic004G066800--Sobic007G092100 Sobic010G154700 Sobic010G154700 Sobic004G066800--Sobic010G154700 Sobic004G066800--Sobic005G111100 Sobic001G513500 Sobic001G513500 Sobic004G066800--Sobic001G513500 Sobic003G155400 Sobic003G155400 Sobic004G066800--Sobic003G155400 Sobic009G191200 Sobic009G191200 Sobic004G066800--Sobic009G191200 Sobic002G078400--Sobic004G300900 Sobic002G078400--Sobic010G065400 Sobic002G078400--Sobic003G362400 Sobic007G091000 Sobic007G091000 Sobic002G078400--Sobic007G091000 Sobic002G078400--Sobic008G132800 Sobic001G445800 Sobic001G445800 Sobic002G078400--Sobic001G445800 Sobic002G078400--Sobic001G331900 Sobic002G078400--Sobic009G198500 Sobic002G078400--Sobic010G029400
Octagon: transcription factors


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