Gene annotation
| Transcriptome id | Sobic.004G298500.2 |
|---|---|
| Synonym | 3, Sb04g033250, CYCP4 |
| Functional annotation | cyclin, putative, expressed |
| UniProt | A0A1Z5RQ75 |
| Pfam | PF08613 |
| Panther DB | PTHR15615 PTHR15615:SF18 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0000079; regulation of cyclin-dependent protein serine/threonine kinase activity |
Orthologs (automatic annotation)
| TAIR | AT2G44740 : cyclin p4;1 |
|---|---|
| RAP-DB (Rice) | LOC_Os02g43550.1 : cyclin, putative, expressed |
| MaizeGDB (Corn) | Zm00025a032345 , Zm00025a010372 , Zm00025a020917 , Zm00025a003400 |
| Brachypodium | PNT69162 , KQK00569 , KQJ83882 , KQJ97834 |
| Barley | HORVU1Hr1G055470.8 , HORVU1Hr1G055470.4 , HORVU1Hr1G055470.5 , HORVU1Hr1G055470.6 , HORVU1Hr1G055470.7 , HORVU1Hr1G055470.1 , HORVU1Hr1G055470.2 , HORVU1Hr1G055470.3 , HORVU2Hr1G093210.1 , HORVU2Hr1G093210.5 , HORVU2Hr1G093210.4 , HORVU2Hr1G093210.7 , HORVU2Hr1G093210.6 , HORVU2Hr1G093210.8 |
| Wheat | TraesCS1D02G218800 , TraesCS1A02G217000 , TraesCS6B02G282600 , TraesCS6A02G241800 , TraesCS2D02G389800 , TraesCS2A02G391500 , TraesCS2B02G410000 , TraesCS1B02G230100 , TraesCS6D02G223800 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.007G090436 | - | K08235: xyloglucan:xyloglucosyl transferase |
| 2 | Sobic.001G069800 | tubulin/FtsZ domain containing protein, putative, expressed | K07375: tubulin beta |
| 3 | Sobic.001G140400 | Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein | - |
| 4 | Sobic.003G151300 | serine/threonine-protein kinase, putative, expressed | - |
| 5 | Sobic.007G147800 | "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR33 - Auxin-responsive SAUR gene family member, expressed | - |
| 6 | Sobic.010G003700 | scarecrow, putative, expressed | - |
| 7 | Sobic.003G250700 | fasciclin domain containing protein, expressed | - |
| 8 | Sobic.002G226300 | OsCML10 - Calmodulin-related calcium sensor protein, expressed | K13448: calcium-binding protein CML |
| 9 | Sobic.001G131100 | expressed protein | - |
| 10 | Sobic.001G107100 | "SRS5(Ortholog in rice:Segami, 2012)"(PubMedID : 31659833)@tubulin/FtsZ domain containing protein, putative, expressed | K07374: tubulin alpha |
| 11 | Sobic.010G138500 | lectin protein kinase family protein, putative, expressed | - |
| 12 | Sobic.003G238600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GDSL-like lipase/acylhydrolase, putative, expressed | - |
| 13 | Sobic.010G014400 | - | - |
| 14 | Sobic.003G305700 | glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 15 | Sobic.006G014000 | erythronate-4-phosphate dehydrogenase domain containing protein, expressed | K15919: glyoxylate/hydroxypyruvate reductase |
| 16 | Sobic.009G026200 | IQ calmodulin-binding motif domain containing protein, expressed | - |
| 17 | Sobic.009G033600 | "OsSAMS1(Ortholog in rice:Chen et al., 2013)"(PubMedID : 31659917)@S-adenosylmethionine synthetase, putative, expressed | K00789: S-adenosylmethionine synthetase |
| 18 | Sobic.002G406200 | expressed protein | - |
| 19 | Sobic.010G044500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GDSL-like lipase/acylhydrolase, putative, expressed | - |
| 20 | Sobic.008G058300 | RNA polymerases N 8 kDa subunit, putative, expressed | K03007: RPB10, DNA-directed RNA polymerases I, II, and III subunit RPABC5 |
Gene co-expression network
Octagon: transcription factors
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