Gene annotation
Transcriptome id Sobic.009G033600.1
Synonym SAM1, Sb09g002840, SAM-1, MAT1, AtSAM1
Functional annotation "OsSAMS1(Ortholog in rice:Chen et al., 2013)" (PubMedID : 31659917)
S-adenosylmethionine synthetase, putative, expressed
UniProt C5YZJ4
Pfam PF00438 PF02772 PF02773
Panther DB PTHR11964
NCBI CDD -
KEGG Orthology K00789; S-adenosylmethionine synthetase
Gene Ontology GO:0006556; S-adenosylmethionine biosynthetic process GO:0004478methionine adenosyltransferase activity GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT1G02500 : S-adenosylmethionine synthetase 1
RAP-DB (Rice) LOC_Os05g04510.2 : S-adenosylmethionine synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a038140 , Zm00025a055322 , Zm00025a024380
Brachypodium KQK04184 , KQK04025 , KQK04183
Barley HORVU6Hr1G063490.1 , HORVU6Hr1G063490.2 , HORVU6Hr1G063490.3 , HORVU6Hr1G063490.4 , HORVU6Hr1G063490.5 , HORVU6Hr1G063540.4 , HORVU6Hr1G063540.5 , HORVU6Hr1G063540.2 , HORVU6Hr1G063570.2 , HORVU6Hr1G063570.1 , HORVU6Hr1G063540.1 , HORVU6Hr1G063540.3 , HORVU6Hr1G063560.1 , HORVU6Hr1G063560.2 , HORVU6Hr1G063560.3 , HORVU6Hr1G063560.4 , HORVU6Hr1G063560.5 , HORVU6Hr1G063560.6 , HORVU6Hr1G063560.7
Wheat TraesCS6D02G159100
Populus PNT50478 , PNT05926 , PNT50480 , PNT31226 , PNT31227


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cDNA sequences
Sobic.009G033600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G132700 ATP-grasp domain containing protein, expressed K01648: ATP citrate (pro-S)-lyase
2 Sobic.001G282100 peptide transporter PTR2, putative, expressed -
3 Sobic.003G371750 - -
4 Sobic.003G215200 expressed protein -
5 Sobic.003G305700 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
6 Sobic.001G494000 Expressed in older stem(PubMedID : 28649278)@homeodomain protein, putative, expressed -
7 Sobic.004G066600 two-component response regulator, putative, expressed K14491: two-component response regulator ARR-B family
8 Sobic.007G008200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@invertase/pectin methylesterase inhibitor family protein, putative, expressed -
9 Sobic.004G051700 OTU-like cysteine protease family protein, putative, expressed K13719: OTU1, ubiquitin thioesterase OTU1
10 Sobic.003G443300 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
11 Sobic.003G363800 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
12 Sobic.007G186100 protein kinase, putative, expressed K13436: pto-interacting protein 1
13 Sobic.003G343900 expressed protein -
14 Sobic.004G262200 DNA binding protein, putative, expressed -
15 Sobic.009G016201 - K09481: SEC61B, protein transport protein SEC61 subunit beta
16 Sobic.008G128900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-directed RNA polymerase II subunit RPB9, putative, expressed K03017: RPB9, DNA-directed RNA polymerase II subunit RPB9
17 Sobic.001G090000 expressed protein -
18 Sobic.001G483100 peptidase, T1 family, putative, expressed K02730: 20S proteasome subunit alpha 1
19 Sobic.005G026600 pentatricopeptide, putative, expressed K15634: 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
20 Sobic.008G036900 MYB family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic009G033600 Sobic009G033600 Sobic008G132700 Sobic008G132700 Sobic009G033600--Sobic008G132700 Sobic001G282100 Sobic001G282100 Sobic009G033600--Sobic001G282100 Sobic003G371750 Sobic003G371750 Sobic009G033600--Sobic003G371750 Sobic003G215200 Sobic003G215200 Sobic009G033600--Sobic003G215200 Sobic003G305700 Sobic003G305700 Sobic009G033600--Sobic003G305700 Sobic001G494000 Sobic001G494000 Sobic009G033600--Sobic001G494000 Sobic004G066600 Sobic004G066600 Sobic009G033600--Sobic004G066600 Sobic007G008200 Sobic007G008200 Sobic009G033600--Sobic007G008200 Sobic004G051700 Sobic004G051700 Sobic009G033600--Sobic004G051700 Sobic006G216600 Sobic006G216600 Sobic008G132700--Sobic006G216600 Sobic002G406500 Sobic002G406500 Sobic008G132700--Sobic002G406500 Sobic001G483100 Sobic001G483100 Sobic008G132700--Sobic001G483100 Sobic001G085400 Sobic001G085400 Sobic008G132700--Sobic001G085400 Sobic001G418900 Sobic001G418900 Sobic008G132700--Sobic001G418900 Sobic006G138100 Sobic006G138100 Sobic008G132700--Sobic006G138100 Sobic002G049300 Sobic002G049300 Sobic008G132700--Sobic002G049300 Sobic001G377800 Sobic001G377800 Sobic008G132700--Sobic001G377800 Sobic006G137100 Sobic006G137100 Sobic008G132700--Sobic006G137100 Sobic002G263800 Sobic002G263800 Sobic001G282100--Sobic002G263800 Sobic001G282100--Sobic001G483100 Sobic004G262200 Sobic004G262200 Sobic001G282100--Sobic004G262200 Sobic009G016201 Sobic009G016201 Sobic001G282100--Sobic009G016201 Sobic003G344600 Sobic003G344600 Sobic001G282100--Sobic003G344600 Sobic001G282100--Sobic004G051700 Sobic001G282100--Sobic001G494000 Sobic010G039800 Sobic010G039800 Sobic001G282100--Sobic010G039800 Sobic001G533500 Sobic001G533500 Sobic001G282100--Sobic001G533500 Sobic003G371750--Sobic004G262200 Sobic002G326500 Sobic002G326500 Sobic003G371750--Sobic002G326500 Sobic002G003800 Sobic002G003800 Sobic003G371750--Sobic002G003800 Sobic010G062100 Sobic010G062100 Sobic003G371750--Sobic010G062100 Sobic001G304201 Sobic001G304201 Sobic003G371750--Sobic001G304201 Sobic009G221500 Sobic009G221500 Sobic003G371750--Sobic009G221500 Sobic004G042000 Sobic004G042000 Sobic003G371750--Sobic004G042000 Sobic003G371750--Sobic003G305700 Sobic006G197100 Sobic006G197100 Sobic003G371750--Sobic006G197100 Sobic003G417100 Sobic003G417100 Sobic003G215200--Sobic003G417100 Sobic006G230300 Sobic006G230300 Sobic003G215200--Sobic006G230300 Sobic003G215200--Sobic004G262200 Sobic003G157600 Sobic003G157600 Sobic003G215200--Sobic003G157600 Sobic010G194100 Sobic010G194100 Sobic003G215200--Sobic010G194100 Sobic006G157900 Sobic006G157900 Sobic003G215200--Sobic006G157900 Sobic002G183700 Sobic002G183700 Sobic003G215200--Sobic002G183700 Sobic002G042200 Sobic002G042200 Sobic003G215200--Sobic002G042200 Sobic003G228600 Sobic003G228600 Sobic003G215200--Sobic003G228600 Sobic010G085800 Sobic010G085800 Sobic003G305700--Sobic010G085800 Sobic006G203700 Sobic006G203700 Sobic003G305700--Sobic006G203700 Sobic003G305700--Sobic004G051700 Sobic009G232100 Sobic009G232100 Sobic003G305700--Sobic009G232100 Sobic009G088900 Sobic009G088900 Sobic003G305700--Sobic009G088900 Sobic001G310300 Sobic001G310300 Sobic003G305700--Sobic001G310300 Sobic007G218800 Sobic007G218800 Sobic003G305700--Sobic007G218800 Sobic001G328800 Sobic001G328800 Sobic003G305700--Sobic001G328800 Sobic001G444800 Sobic001G444800 Sobic003G305700--Sobic001G444800 Sobic008G106700 Sobic008G106700 Sobic001G494000--Sobic008G106700 Sobic003G343900 Sobic003G343900 Sobic001G494000--Sobic003G343900 Sobic007G186100 Sobic007G186100 Sobic001G494000--Sobic007G186100 Sobic004G046200 Sobic004G046200 Sobic001G494000--Sobic004G046200 Sobic003G219800 Sobic003G219800 Sobic001G494000--Sobic003G219800 Sobic010G195500 Sobic010G195500 Sobic001G494000--Sobic010G195500 Sobic003G079400 Sobic003G079400 Sobic001G494000--Sobic003G079400 Sobic001G494000--Sobic010G062100 Sobic001G494000--Sobic002G003800 Sobic010G239500 Sobic010G239500 Sobic004G066600--Sobic010G239500 Sobic002G176100 Sobic002G176100 Sobic004G066600--Sobic002G176100 Sobic002G345300 Sobic002G345300 Sobic004G066600--Sobic002G345300 Sobic004G101300 Sobic004G101300 Sobic004G066600--Sobic004G101300 Sobic003G319500 Sobic003G319500 Sobic004G066600--Sobic003G319500 Sobic003G429000 Sobic003G429000 Sobic004G066600--Sobic003G429000 Sobic007G087200 Sobic007G087200 Sobic004G066600--Sobic007G087200 Sobic005G188100 Sobic005G188100 Sobic004G066600--Sobic005G188100 Sobic002G190900 Sobic002G190900 Sobic004G066600--Sobic002G190900 Sobic007G008200--Sobic004G066600 Sobic007G161400 Sobic007G161400 Sobic007G008200--Sobic007G161400 Sobic008G128900 Sobic008G128900 Sobic007G008200--Sobic008G128900 Sobic003G184100 Sobic003G184100 Sobic007G008200--Sobic003G184100 Sobic001G049900 Sobic001G049900 Sobic007G008200--Sobic001G049900 Sobic007G008200--Sobic005G188100 Sobic007G078100 Sobic007G078100 Sobic007G008200--Sobic007G078100 Sobic007G008200--Sobic002G003800 Sobic007G008200--Sobic001G494000 Sobic010G012500 Sobic010G012500 Sobic004G051700--Sobic010G012500 Sobic004G051700--Sobic002G190900 Sobic001G048832 Sobic001G048832 Sobic004G051700--Sobic001G048832 Sobic007G051000 Sobic007G051000 Sobic004G051700--Sobic007G051000 Sobic004G211833 Sobic004G211833 Sobic004G051700--Sobic004G211833 Sobic002G398901 Sobic002G398901 Sobic004G051700--Sobic002G398901 Sobic002G257300 Sobic002G257300 Sobic004G051700--Sobic002G257300 Sobic002G175100 Sobic002G175100 Sobic004G051700--Sobic002G175100 Sobic010G204500 Sobic010G204500 Sobic004G051700--Sobic010G204500
Octagon: transcription factors


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