Gene annotation
Transcriptome id Sobic.005G026600.1
Synonym Sb05g002230
Functional annotation pentatricopeptide, putative, expressed
UniProt C5Y440
Pfam PF00300
Panther DB PTHR23029 PTHR23029:SF27
NCBI CDD KOG0235; Phosphoglycerate mutase
KEGG Orthology K15634; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G50520 : Phosphoglycerate mutase family protein
RAP-DB (Rice) LOC_Os12g04110.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS5A02G137100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G282100 peptide transporter PTR2, putative, expressed -
2 Sobic.003G107600 3-beta-hydroxysteroid-Delta-isomerase, putative, expressed K01824: cholestenol Delta-isomerase
3 Sobic.010G182300 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha
4 Sobic.002G258800 ribosomal protein L7Ae, putative, expressed K02936: RP-L7Ae, large subunit ribosomal protein L7Ae
5 Sobic.007G008200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@invertase/pectin methylesterase inhibitor family protein, putative, expressed -
6 Sobic.009G033600 "OsSAMS1(Ortholog in rice:Chen et al., 2013)"(PubMedID : 31659917)@S-adenosylmethionine synthetase, putative, expressed K00789: S-adenosylmethionine synthetase
7 Sobic.004G066600 two-component response regulator, putative, expressed K14491: two-component response regulator ARR-B family
8 Sobic.002G155500 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
9 Sobic.003G280400 hexokinase, putative, expressed K00844: hexokinase
10 Sobic.007G161400 Mpv17 / PMP22 family domain containing protein, expressed K13347: PXMP2, peroxisomal membrane protein 2
K13348: protein Mpv17
11 Sobic.004G152400 ribosomal protein L29, putative, expressed K02918: RP-L35e, large subunit ribosomal protein L35e
12 Sobic.004G262200 DNA binding protein, putative, expressed -
13 Sobic.010G259900 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
14 Sobic.005G078800 expressed protein -
15 Sobic.001G048832 - -
16 Sobic.003G254800 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA5 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
17 Sobic.001G330000 hydrolase, alpha/beta fold family domain containing protein, expressed -
18 Sobic.009G065400 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
19 Sobic.006G158400 short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
20 Sobic.008G036900 MYB family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic005G026600 Sobic005G026600 Sobic001G282100 Sobic001G282100 Sobic005G026600--Sobic001G282100 Sobic003G107600 Sobic003G107600 Sobic005G026600--Sobic003G107600 Sobic010G182300 Sobic010G182300 Sobic005G026600--Sobic010G182300 Sobic002G258800 Sobic002G258800 Sobic005G026600--Sobic002G258800 Sobic007G008200 Sobic007G008200 Sobic005G026600--Sobic007G008200 Sobic009G033600 Sobic009G033600 Sobic005G026600--Sobic009G033600 Sobic004G066600 Sobic004G066600 Sobic005G026600--Sobic004G066600 Sobic002G155500 Sobic002G155500 Sobic005G026600--Sobic002G155500 Sobic003G280400 Sobic003G280400 Sobic005G026600--Sobic003G280400 Sobic002G263800 Sobic002G263800 Sobic001G282100--Sobic002G263800 Sobic001G483100 Sobic001G483100 Sobic001G282100--Sobic001G483100 Sobic004G262200 Sobic004G262200 Sobic001G282100--Sobic004G262200 Sobic009G016201 Sobic009G016201 Sobic001G282100--Sobic009G016201 Sobic003G344600 Sobic003G344600 Sobic001G282100--Sobic003G344600 Sobic004G051700 Sobic004G051700 Sobic001G282100--Sobic004G051700 Sobic001G494000 Sobic001G494000 Sobic001G282100--Sobic001G494000 Sobic010G039800 Sobic010G039800 Sobic001G282100--Sobic010G039800 Sobic001G533500 Sobic001G533500 Sobic001G282100--Sobic001G533500 Sobic010G182600 Sobic010G182600 Sobic003G107600--Sobic010G182600 Sobic002G259000 Sobic002G259000 Sobic003G107600--Sobic002G259000 Sobic010G173100 Sobic010G173100 Sobic003G107600--Sobic010G173100 Sobic003G107600--Sobic002G258800 Sobic004G152400 Sobic004G152400 Sobic003G107600--Sobic004G152400 Sobic010G259900 Sobic010G259900 Sobic003G107600--Sobic010G259900 Sobic010G260100 Sobic010G260100 Sobic003G107600--Sobic010G260100 Sobic001G046300 Sobic001G046300 Sobic003G107600--Sobic001G046300 Sobic003G107600--Sobic010G182300 Sobic010G182300--Sobic002G258800 Sobic010G182300--Sobic002G259000 Sobic004G152700 Sobic004G152700 Sobic010G182300--Sobic004G152700 Sobic004G103800 Sobic004G103800 Sobic010G182300--Sobic004G103800 Sobic010G182300--Sobic010G259900 Sobic010G182300--Sobic001G046300 Sobic010G182300--Sobic010G260100 Sobic009G065400 Sobic009G065400 Sobic010G182300--Sobic009G065400 Sobic010G182300--Sobic010G182600 Sobic002G258800--Sobic010G182300 Sobic002G258800--Sobic002G259000 Sobic002G258800--Sobic004G152700 Sobic002G258800--Sobic004G152400 Sobic002G258800--Sobic001G046300 Sobic002G258800--Sobic004G103800 Sobic002G258800--Sobic010G259900 Sobic003G321700 Sobic003G321700 Sobic002G258800--Sobic003G321700 Sobic002G258800--Sobic009G065400 Sobic007G008200--Sobic004G066600 Sobic007G161400 Sobic007G161400 Sobic007G008200--Sobic007G161400 Sobic008G128900 Sobic008G128900 Sobic007G008200--Sobic008G128900 Sobic003G184100 Sobic003G184100 Sobic007G008200--Sobic003G184100 Sobic001G049900 Sobic001G049900 Sobic007G008200--Sobic001G049900 Sobic005G188100 Sobic005G188100 Sobic007G008200--Sobic005G188100 Sobic007G078100 Sobic007G078100 Sobic007G008200--Sobic007G078100 Sobic002G003800 Sobic002G003800 Sobic007G008200--Sobic002G003800 Sobic007G008200--Sobic001G494000 Sobic008G132700 Sobic008G132700 Sobic009G033600--Sobic008G132700 Sobic009G033600--Sobic001G282100 Sobic003G371750 Sobic003G371750 Sobic009G033600--Sobic003G371750 Sobic003G215200 Sobic003G215200 Sobic009G033600--Sobic003G215200 Sobic003G305700 Sobic003G305700 Sobic009G033600--Sobic003G305700 Sobic009G033600--Sobic001G494000 Sobic009G033600--Sobic004G066600 Sobic009G033600--Sobic007G008200 Sobic009G033600--Sobic004G051700 Sobic010G239500 Sobic010G239500 Sobic004G066600--Sobic010G239500 Sobic002G176100 Sobic002G176100 Sobic004G066600--Sobic002G176100 Sobic002G345300 Sobic002G345300 Sobic004G066600--Sobic002G345300 Sobic004G101300 Sobic004G101300 Sobic004G066600--Sobic004G101300 Sobic003G319500 Sobic003G319500 Sobic004G066600--Sobic003G319500 Sobic003G429000 Sobic003G429000 Sobic004G066600--Sobic003G429000 Sobic007G087200 Sobic007G087200 Sobic004G066600--Sobic007G087200 Sobic004G066600--Sobic005G188100 Sobic002G190900 Sobic002G190900 Sobic004G066600--Sobic002G190900 Sobic004G225500 Sobic004G225500 Sobic002G155500--Sobic004G225500 Sobic010G121300 Sobic010G121300 Sobic002G155500--Sobic010G121300 Sobic004G351500 Sobic004G351500 Sobic002G155500--Sobic004G351500 Sobic002G155500--Sobic007G078100 Sobic004G272800 Sobic004G272800 Sobic002G155500--Sobic004G272800 Sobic001G048832 Sobic001G048832 Sobic002G155500--Sobic001G048832 Sobic004G276100 Sobic004G276100 Sobic002G155500--Sobic004G276100 Sobic002G153500 Sobic002G153500 Sobic002G155500--Sobic002G153500 Sobic002G233100 Sobic002G233100 Sobic002G155500--Sobic002G233100 Sobic003G280400--Sobic007G161400 Sobic006G059700 Sobic006G059700 Sobic003G280400--Sobic006G059700 Sobic010G110800 Sobic010G110800 Sobic003G280400--Sobic010G110800 Sobic007G204700 Sobic007G204700 Sobic003G280400--Sobic007G204700 Sobic010G272300 Sobic010G272300 Sobic003G280400--Sobic010G272300 Sobic001G264000 Sobic001G264000 Sobic003G280400--Sobic001G264000 Sobic005G065900 Sobic005G065900 Sobic003G280400--Sobic005G065900 Sobic006G197100 Sobic006G197100 Sobic003G280400--Sobic006G197100 Sobic006G256900 Sobic006G256900 Sobic003G280400--Sobic006G256900
Octagon: transcription factors


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