Gene annotation
Transcriptome id Sobic.006G014000.1
Synonym Sb06g001370
Functional annotation erythronate-4-phosphate dehydrogenase domain containing protein, expressed
UniProt C5YC45
Pfam PF03446 PF00389
Panther DB PTHR10996 PTHR10996:SF131
NCBI CDD KOG0069; Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily)
KEGG Orthology K15919; glyoxylate/hydroxypyruvate reductase
Gene Ontology GO:0004616; phosphogluconate dehydrogenase (decarboxylating) activity GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT2G45630 : D-isomer specific 2-hydroxyacid dehydrogenase family protein
RAP-DB (Rice) LOC_Os04g01650.1 : erythronate-4-phosphate dehydrogenase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a012280 , Zm00025a055473
Brachypodium KQJ95825
Barley HORVU2Hr1G005140.1 , HORVU4Hr1G086940.1 , HORVU4Hr1G086940.3 , HORVU4Hr1G086940.2 , HORVU4Hr1G086940.5 , HORVU4Hr1G086940.4 , HORVU4Hr1G086940.6 , HORVU2Hr1G005140.17 , HORVU2Hr1G005140.20
Wheat TraesCS2A02G035500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G139000 aminotransferase, putative, expressed -
2 Sobic.003G157700 expressed protein -
3 Sobic.010G122800 cadmium tolerance factor, putative, expressed -
4 Sobic.003G215200 expressed protein -
5 Sobic.006G008400 receptor protein kinase, putative, expressed -
6 Sobic.001G087900 expressed protein -
7 Sobic.007G157900 gibberellin receptor GID1L2, putative, expressed -
8 Sobic.001G131100 expressed protein -
9 Sobic.008G043700 expressed protein -
10 Sobic.009G113700 peroxidase precursor, putative, expressed K00430: peroxidase
11 Sobic.005G115600 6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed K00033: PGD, gnd, 6-phosphogluconate dehydrogenase
12 Sobic.009G017500 beta-hexosaminidase precursor, putative, expressed K12373: hexosaminidase
13 Sobic.005G000100 monoglyceride lipase, putative, expressed -
14 Sobic.001G442500 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
15 Sobic.004G351500 - -
16 Sobic.001G456100 integral membrane protein, putative, expressed -
17 Sobic.001G162200 expressed protein -
18 Sobic.003G206700 heavy metal-associated domain containing protein, expressed -
19 Sobic.010G279200 thioredoxin, putative, expressed K03671: thioredoxin 1
20 Sobic.009G238900 dehydrogenase, putative, expressed K00031: IDH1, IDH2, isocitrate dehydrogenase


Gene co-expression network
sample Sobic006G014000 Sobic006G014000 Sobic003G139000 Sobic003G139000 Sobic006G014000--Sobic003G139000 Sobic003G157700 Sobic003G157700 Sobic006G014000--Sobic003G157700 Sobic010G122800 Sobic010G122800 Sobic006G014000--Sobic010G122800 Sobic003G215200 Sobic003G215200 Sobic006G014000--Sobic003G215200 Sobic006G008400 Sobic006G008400 Sobic006G014000--Sobic006G008400 Sobic001G087900 Sobic001G087900 Sobic006G014000--Sobic001G087900 Sobic007G157900 Sobic007G157900 Sobic006G014000--Sobic007G157900 Sobic001G131100 Sobic001G131100 Sobic006G014000--Sobic001G131100 Sobic008G043700 Sobic008G043700 Sobic006G014000--Sobic008G043700 Sobic001G528300 Sobic001G528300 Sobic003G139000--Sobic001G528300 Sobic003G139000--Sobic006G014000 Sobic009G113700 Sobic009G113700 Sobic003G139000--Sobic009G113700 Sobic003G139000--Sobic003G215200 Sobic003G139000--Sobic007G157900 Sobic006G009000 Sobic006G009000 Sobic003G139000--Sobic006G009000 Sobic009G065300 Sobic009G065300 Sobic003G139000--Sobic009G065300 Sobic002G327100 Sobic002G327100 Sobic003G139000--Sobic002G327100 Sobic010G192900 Sobic010G192900 Sobic003G139000--Sobic010G192900 Sobic002G415000 Sobic002G415000 Sobic003G157700--Sobic002G415000 Sobic001G261460 Sobic001G261460 Sobic003G157700--Sobic001G261460 Sobic005G061200 Sobic005G061200 Sobic003G157700--Sobic005G061200 Sobic003G206700 Sobic003G206700 Sobic003G157700--Sobic003G206700 Sobic007G047300 Sobic007G047300 Sobic003G157700--Sobic007G047300 Sobic010G047600 Sobic010G047600 Sobic003G157700--Sobic010G047600 Sobic009G008800 Sobic009G008800 Sobic003G157700--Sobic009G008800 Sobic001G059500 Sobic001G059500 Sobic003G157700--Sobic001G059500 Sobic001G360700 Sobic001G360700 Sobic003G157700--Sobic001G360700 Sobic010G122800--Sobic006G014000 Sobic010G122800--Sobic001G131100 Sobic010G122800--Sobic001G087900 Sobic005G000100 Sobic005G000100 Sobic010G122800--Sobic005G000100 Sobic004G010300 Sobic004G010300 Sobic010G122800--Sobic004G010300 Sobic008G128900 Sobic008G128900 Sobic010G122800--Sobic008G128900 Sobic003G384700 Sobic003G384700 Sobic010G122800--Sobic003G384700 Sobic002G226300 Sobic002G226300 Sobic010G122800--Sobic002G226300 Sobic010G122800--Sobic003G157700 Sobic003G417100 Sobic003G417100 Sobic003G215200--Sobic003G417100 Sobic006G230300 Sobic006G230300 Sobic003G215200--Sobic006G230300 Sobic004G262200 Sobic004G262200 Sobic003G215200--Sobic004G262200 Sobic003G157600 Sobic003G157600 Sobic003G215200--Sobic003G157600 Sobic010G194100 Sobic010G194100 Sobic003G215200--Sobic010G194100 Sobic006G157900 Sobic006G157900 Sobic003G215200--Sobic006G157900 Sobic002G183700 Sobic002G183700 Sobic003G215200--Sobic002G183700 Sobic002G042200 Sobic002G042200 Sobic003G215200--Sobic002G042200 Sobic003G228600 Sobic003G228600 Sobic003G215200--Sobic003G228600 Sobic009G238900 Sobic009G238900 Sobic006G008400--Sobic009G238900 Sobic001G096100 Sobic001G096100 Sobic006G008400--Sobic001G096100 Sobic006G002700 Sobic006G002700 Sobic006G008400--Sobic006G002700 Sobic001G304400 Sobic001G304400 Sobic006G008400--Sobic001G304400 Sobic006G038200 Sobic006G038200 Sobic006G008400--Sobic006G038200 Sobic009G062000 Sobic009G062000 Sobic006G008400--Sobic009G062000 Sobic006G008400--Sobic003G206700 Sobic001G168600 Sobic001G168600 Sobic006G008400--Sobic001G168600 Sobic001G289100 Sobic001G289100 Sobic006G008400--Sobic001G289100 Sobic004G351500 Sobic004G351500 Sobic001G087900--Sobic004G351500 Sobic001G428200 Sobic001G428200 Sobic001G087900--Sobic001G428200 Sobic001G353600 Sobic001G353600 Sobic001G087900--Sobic001G353600 Sobic009G131100 Sobic009G131100 Sobic001G087900--Sobic009G131100 Sobic009G198500 Sobic009G198500 Sobic001G087900--Sobic009G198500 Sobic004G272300 Sobic004G272300 Sobic001G087900--Sobic004G272300 Sobic004G026400 Sobic004G026400 Sobic001G087900--Sobic004G026400 Sobic001G095632 Sobic001G095632 Sobic001G087900--Sobic001G095632 Sobic001G034700 Sobic001G034700 Sobic001G087900--Sobic001G034700 Sobic007G157900--Sobic009G238900 Sobic007G157900--Sobic004G351500 Sobic007G157900--Sobic010G194100 Sobic002G232700 Sobic002G232700 Sobic007G157900--Sobic002G232700 Sobic009G054100 Sobic009G054100 Sobic007G157900--Sobic009G054100 Sobic007G157900--Sobic003G417100 Sobic004G062500 Sobic004G062500 Sobic007G157900--Sobic004G062500 Sobic004G262500 Sobic004G262500 Sobic007G157900--Sobic004G262500 Sobic007G127100 Sobic007G127100 Sobic007G157900--Sobic007G127100 Sobic009G129500 Sobic009G129500 Sobic001G131100--Sobic009G129500 Sobic002G303700 Sobic002G303700 Sobic001G131100--Sobic002G303700 Sobic001G131100--Sobic010G122800 Sobic009G024600 Sobic009G024600 Sobic001G131100--Sobic009G024600 Sobic001G131100--Sobic006G014000 Sobic009G102300 Sobic009G102300 Sobic001G131100--Sobic009G102300 Sobic001G131100--Sobic005G000100 Sobic001G445000 Sobic001G445000 Sobic001G131100--Sobic001G445000 Sobic002G392800 Sobic002G392800 Sobic001G131100--Sobic002G392800 Sobic008G043700--Sobic006G014000 Sobic008G043700--Sobic001G087900 Sobic001G086900 Sobic001G086900 Sobic008G043700--Sobic001G086900 Sobic001G131400 Sobic001G131400 Sobic008G043700--Sobic001G131400 Sobic004G051000 Sobic004G051000 Sobic008G043700--Sobic004G051000 Sobic005G014000 Sobic005G014000 Sobic008G043700--Sobic005G014000 Sobic008G043700--Sobic003G157600 Sobic008G043700--Sobic001G289100 Sobic008G043700--Sobic003G157700
Octagon: transcription factors


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