Gene annotation
Transcriptome id Sobic.001G131100.1,Sobic.001G131100.2
Synonym Sb01g011490
Functional annotation expressed protein
UniProt C5WPH7 , A0A1Z5S5H9
Pfam PF07995
Panther DB PTHR19328 PTHR19328:SF36
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016901; oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor GO:0005975carbohydrate metabolic process


Orthologs (automatic annotation)
TAIR AT1G74790 : catalytics
RAP-DB (Rice) LOC_Os03g48540.1 : expressed protein
MaizeGDB (Corn) Zm00025a007666 , Zm00025a026895
Brachypodium KQK13719 , KQK13718 , PNT74284 , PNT74283
Barley HORVU4Hr1G005110.7 , HORVU4Hr1G005110.6 , HORVU4Hr1G005110.5 , HORVU4Hr1G005110.4 , HORVU4Hr1G005110.3 , HORVU4Hr1G005110.2 , HORVU4Hr1G005110.1 , HORVU4Hr1G005110.9 , HORVU4Hr1G005110.8 , HORVU4Hr1G005110.17 , HORVU4Hr1G005110.16 , HORVU4Hr1G005110.15 , HORVU4Hr1G005110.14 , HORVU4Hr1G005110.13 , HORVU4Hr1G005110.12 , HORVU4Hr1G005110.11 , HORVU4Hr1G005110.10
Wheat TraesCS4B02G031800 , TraesCS4D02G029500 , TraesCS4D02G029500 , TraesCS4A02G281400
Populus -


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cDNA sequences
Sobic.001G131100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G129500 cyclin, putative, expressed -
2 Sobic.002G303700 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed -
3 Sobic.010G122800 cadmium tolerance factor, putative, expressed -
4 Sobic.009G024600 "RSR1(Ortholog in rice:Fu and Xue, 2010)"(PubMedID : 31659916)@"AP2-like TF, coexpress with genes associated with the hormonesignaling pathway, floral development in Arabidopsis"(PubMedID : 28944535)@AP2 domain containing protein, expressed K09284: AP2-like factor, euAP2 lineage
5 Sobic.006G014000 erythronate-4-phosphate dehydrogenase domain containing protein, expressed K15919: glyoxylate/hydroxypyruvate reductase
6 Sobic.009G102300 hydrolase, acting on glycosyl bonds, putative, expressed K01227: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
7 Sobic.005G000100 monoglyceride lipase, putative, expressed -
8 Sobic.001G445000 cation efflux family protein, putative, expressed -
9 Sobic.002G392800 thymidylate kinase, putative, expressed K00943: tmk, dTMP kinase
10 Sobic.004G298500 cyclin, putative, expressed -
11 Sobic.005G191600 OsSigP7 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/Lys catalytic dyad, expressed K09647: mitochondrial inner membrane protease subunit 1
12 Sobic.003G215200 expressed protein -
13 Sobic.010G122200 cadmium tolerance factor, putative, expressed -
14 Sobic.001G294000 LOL3, putative, expressed -
15 Sobic.003G139000 aminotransferase, putative, expressed -
16 Sobic.009G033600 "OsSAMS1(Ortholog in rice:Chen et al., 2013)"(PubMedID : 31659917)@S-adenosylmethionine synthetase, putative, expressed K00789: S-adenosylmethionine synthetase
17 Sobic.002G133100 prephenate dehydratase domain containing protein, expressed K05359: ADT, arogenate/prephenate dehydratase
18 Sobic.008G004100 phosphatidate cytidylyltransferase, putative, expressed K15892: farnesol kinase
19 Sobic.010G218300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA binding protein, putative, expressed -
20 Sobic.006G002700 OsRhmbd10 - Putative Rhomboid homologue, expressed -


Gene co-expression network
sample Sobic001G131100 Sobic001G131100 Sobic009G129500 Sobic009G129500 Sobic001G131100--Sobic009G129500 Sobic002G303700 Sobic002G303700 Sobic001G131100--Sobic002G303700 Sobic010G122800 Sobic010G122800 Sobic001G131100--Sobic010G122800 Sobic009G024600 Sobic009G024600 Sobic001G131100--Sobic009G024600 Sobic006G014000 Sobic006G014000 Sobic001G131100--Sobic006G014000 Sobic009G102300 Sobic009G102300 Sobic001G131100--Sobic009G102300 Sobic005G000100 Sobic005G000100 Sobic001G131100--Sobic005G000100 Sobic001G445000 Sobic001G445000 Sobic001G131100--Sobic001G445000 Sobic002G392800 Sobic002G392800 Sobic001G131100--Sobic002G392800 Sobic009G129500--Sobic009G024600 Sobic009G129500--Sobic001G131100 Sobic009G117000 Sobic009G117000 Sobic009G129500--Sobic009G117000 Sobic009G129500--Sobic001G445000 Sobic001G129300 Sobic001G129300 Sobic009G129500--Sobic001G129300 Sobic008G058300 Sobic008G058300 Sobic009G129500--Sobic008G058300 Sobic001G349500 Sobic001G349500 Sobic009G129500--Sobic001G349500 Sobic002G278300 Sobic002G278300 Sobic009G129500--Sobic002G278300 Sobic003G181600 Sobic003G181600 Sobic009G129500--Sobic003G181600 Sobic002G303700--Sobic001G131100 Sobic008G128900 Sobic008G128900 Sobic002G303700--Sobic008G128900 Sobic001G247900 Sobic001G247900 Sobic002G303700--Sobic001G247900 Sobic001G090000 Sobic001G090000 Sobic002G303700--Sobic001G090000 Sobic002G303700--Sobic009G102300 Sobic003G215200 Sobic003G215200 Sobic002G303700--Sobic003G215200 Sobic002G155500 Sobic002G155500 Sobic002G303700--Sobic002G155500 Sobic008G191600 Sobic008G191600 Sobic002G303700--Sobic008G191600 Sobic002G303700--Sobic009G024600 Sobic010G122800--Sobic006G014000 Sobic010G122800--Sobic001G131100 Sobic001G087900 Sobic001G087900 Sobic010G122800--Sobic001G087900 Sobic010G122800--Sobic005G000100 Sobic004G010300 Sobic004G010300 Sobic010G122800--Sobic004G010300 Sobic010G122800--Sobic008G128900 Sobic003G384700 Sobic003G384700 Sobic010G122800--Sobic003G384700 Sobic002G226300 Sobic002G226300 Sobic010G122800--Sobic002G226300 Sobic003G157700 Sobic003G157700 Sobic010G122800--Sobic003G157700 Sobic009G024600--Sobic009G129500 Sobic009G024600--Sobic005G000100 Sobic009G024600--Sobic001G131100 Sobic005G107300 Sobic005G107300 Sobic009G024600--Sobic005G107300 Sobic004G014000 Sobic004G014000 Sobic009G024600--Sobic004G014000 Sobic003G116700 Sobic003G116700 Sobic009G024600--Sobic003G116700 Sobic007G079700 Sobic007G079700 Sobic009G024600--Sobic007G079700 Sobic002G016300 Sobic002G016300 Sobic009G024600--Sobic002G016300 Sobic001G208300 Sobic001G208300 Sobic009G024600--Sobic001G208300 Sobic003G139000 Sobic003G139000 Sobic006G014000--Sobic003G139000 Sobic006G014000--Sobic003G157700 Sobic006G014000--Sobic010G122800 Sobic006G014000--Sobic003G215200 Sobic006G008400 Sobic006G008400 Sobic006G014000--Sobic006G008400 Sobic006G014000--Sobic001G087900 Sobic007G157900 Sobic007G157900 Sobic006G014000--Sobic007G157900 Sobic006G014000--Sobic001G131100 Sobic008G043700 Sobic008G043700 Sobic006G014000--Sobic008G043700 Sobic010G045400 Sobic010G045400 Sobic009G102300--Sobic010G045400 Sobic006G230300 Sobic006G230300 Sobic009G102300--Sobic006G230300 Sobic002G114800 Sobic002G114800 Sobic009G102300--Sobic002G114800 Sobic008G004100 Sobic008G004100 Sobic009G102300--Sobic008G004100 Sobic009G246100 Sobic009G246100 Sobic009G102300--Sobic009G246100 Sobic009G102300--Sobic003G215200 Sobic006G130501 Sobic006G130501 Sobic009G102300--Sobic006G130501 Sobic004G161900 Sobic004G161900 Sobic009G102300--Sobic004G161900 Sobic010G218300 Sobic010G218300 Sobic009G102300--Sobic010G218300 Sobic005G000100--Sobic004G010300 Sobic005G000100--Sobic009G024600 Sobic005G093400 Sobic005G093400 Sobic005G000100--Sobic005G093400 Sobic004G309500 Sobic004G309500 Sobic005G000100--Sobic004G309500 Sobic005G000100--Sobic001G087900 Sobic001G075000 Sobic001G075000 Sobic005G000100--Sobic001G075000 Sobic004G114400 Sobic004G114400 Sobic005G000100--Sobic004G114400 Sobic005G000100--Sobic010G122800 Sobic009G156300 Sobic009G156300 Sobic005G000100--Sobic009G156300 Sobic001G445000--Sobic009G129500 Sobic007G009000 Sobic007G009000 Sobic001G445000--Sobic007G009000 Sobic001G112800 Sobic001G112800 Sobic001G445000--Sobic001G112800 Sobic004G001000 Sobic004G001000 Sobic001G445000--Sobic004G001000 Sobic001G242800 Sobic001G242800 Sobic001G445000--Sobic001G242800 Sobic001G445000--Sobic009G117000 Sobic002G319200 Sobic002G319200 Sobic001G445000--Sobic002G319200 Sobic001G445000--Sobic001G131100 Sobic001G445000--Sobic002G392800 Sobic002G392800--Sobic001G242800 Sobic001G112700 Sobic001G112700 Sobic002G392800--Sobic001G112700 Sobic002G392800--Sobic008G004100 Sobic003G160900 Sobic003G160900 Sobic002G392800--Sobic003G160900 Sobic010G080500 Sobic010G080500 Sobic002G392800--Sobic010G080500 Sobic006G002700 Sobic006G002700 Sobic002G392800--Sobic006G002700 Sobic009G238900 Sobic009G238900 Sobic002G392800--Sobic009G238900 Sobic002G392800--Sobic009G117000 Sobic008G132700 Sobic008G132700 Sobic002G392800--Sobic008G132700
Octagon: transcription factors


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