Gene annotation
Transcriptome id Sobic.001G445000.1
Synonym Sb01g041820
Functional annotation cation efflux family protein, putative, expressed
UniProt C5WRP0
Pfam PF16916 PF01545
Panther DB PTHR11562 PTHR11562:SF45
NCBI CDD KOG1485; Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily)
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0008324cation transmembrane transporter activity GO:0006812cation transport


Orthologs (automatic annotation)
TAIR AT3G58060 : Cation efflux family protein
RAP-DB (Rice) LOC_Os03g12530.1 : cation efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a001452
Brachypodium PNT77794 , PNT77793 , KQK22713 , KQK22712
Barley HORVU4Hr1G065110.1 , HORVU4Hr1G065110.4 , HORVU4Hr1G065110.6 , HORVU4Hr1G065110.8 , HORVU4Hr1G065110.3 , HORVU4Hr1G065110.2 , HORVU4Hr1G065110.5 , HORVU4Hr1G065110.7
Wheat TraesCS4B02G233300 , TraesCS4A02G077100 , TraesCS4D02G234400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G129500 cyclin, putative, expressed -
2 Sobic.007G009000 expressed protein -
3 Sobic.001G112800 - -
4 Sobic.004G001000 transmembrane amino acid transporter protein, putative, expressed K15015: SLC32A, solute carrier family 32 (vesicular inhibitory amino acid transporter)
5 Sobic.001G242800 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
6 Sobic.009G117000 expressed protein -
7 Sobic.002G319200 expressed protein K11490: condensin-2 complex subunit H2
8 Sobic.001G131100 expressed protein -
9 Sobic.002G392800 thymidylate kinase, putative, expressed K00943: tmk, dTMP kinase
10 Sobic.010G138500 lectin protein kinase family protein, putative, expressed -
11 Sobic.004G086100 tetratricopeptide repeat domain containing protein, expressed -
12 Sobic.004G134100 glycosyltransferase, putative, expressed -
13 Sobic.001G426200 OsWLIM2 - LIM domain protein, putative actin-binding protein and transcription factor, expressed K09377: cysteine and glycine-rich protein
14 Sobic.004G248900 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
15 Sobic.005G211200 seed maturation protein PM27, putative, expressed -
16 Sobic.008G138600 SCARECROW, putative, expressed -
17 Sobic.009G126500 methyltransferase, putative, expressed -
18 Sobic.001G240500 flavoprotein wrbA, putative, expressed K03809: NAD(P)H dehydrogenase (quinone)
19 Sobic.006G052400 LSM domain containing protein, expressed K12625: U6 snRNA-associated Sm-like protein LSm6
20 Sobic.002G259400 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18


Gene co-expression network
sample Sobic001G445000 Sobic001G445000 Sobic009G129500 Sobic009G129500 Sobic001G445000--Sobic009G129500 Sobic007G009000 Sobic007G009000 Sobic001G445000--Sobic007G009000 Sobic001G112800 Sobic001G112800 Sobic001G445000--Sobic001G112800 Sobic004G001000 Sobic004G001000 Sobic001G445000--Sobic004G001000 Sobic001G242800 Sobic001G242800 Sobic001G445000--Sobic001G242800 Sobic009G117000 Sobic009G117000 Sobic001G445000--Sobic009G117000 Sobic002G319200 Sobic002G319200 Sobic001G445000--Sobic002G319200 Sobic001G131100 Sobic001G131100 Sobic001G445000--Sobic001G131100 Sobic002G392800 Sobic002G392800 Sobic001G445000--Sobic002G392800 Sobic009G024600 Sobic009G024600 Sobic009G129500--Sobic009G024600 Sobic009G129500--Sobic001G131100 Sobic009G129500--Sobic009G117000 Sobic009G129500--Sobic001G445000 Sobic001G129300 Sobic001G129300 Sobic009G129500--Sobic001G129300 Sobic008G058300 Sobic008G058300 Sobic009G129500--Sobic008G058300 Sobic001G349500 Sobic001G349500 Sobic009G129500--Sobic001G349500 Sobic002G278300 Sobic002G278300 Sobic009G129500--Sobic002G278300 Sobic003G181600 Sobic003G181600 Sobic009G129500--Sobic003G181600 Sobic008G035900 Sobic008G035900 Sobic007G009000--Sobic008G035900 Sobic001G230900 Sobic001G230900 Sobic007G009000--Sobic001G230900 Sobic001G030400 Sobic001G030400 Sobic007G009000--Sobic001G030400 Sobic003G003700 Sobic003G003700 Sobic007G009000--Sobic003G003700 Sobic001G157800 Sobic001G157800 Sobic007G009000--Sobic001G157800 Sobic003G024800 Sobic003G024800 Sobic007G009000--Sobic003G024800 Sobic004G134100 Sobic004G134100 Sobic007G009000--Sobic004G134100 Sobic001G402600 Sobic001G402600 Sobic007G009000--Sobic001G402600 Sobic007G009000--Sobic001G445000 Sobic008G157000 Sobic008G157000 Sobic001G112800--Sobic008G157000 Sobic008G021900 Sobic008G021900 Sobic001G112800--Sobic008G021900 Sobic010G063900 Sobic010G063900 Sobic001G112800--Sobic010G063900 Sobic001G528600 Sobic001G528600 Sobic001G112800--Sobic001G528600 Sobic010G218300 Sobic010G218300 Sobic001G112800--Sobic010G218300 Sobic001G112800--Sobic002G319200 Sobic005G164700 Sobic005G164700 Sobic001G112800--Sobic005G164700 Sobic001G112800--Sobic003G003700 Sobic002G280700 Sobic002G280700 Sobic001G112800--Sobic002G280700 Sobic002G233100 Sobic002G233100 Sobic004G001000--Sobic002G233100 Sobic005G043000 Sobic005G043000 Sobic004G001000--Sobic005G043000 Sobic008G128900 Sobic008G128900 Sobic004G001000--Sobic008G128900 Sobic002G312900 Sobic002G312900 Sobic004G001000--Sobic002G312900 Sobic006G125100 Sobic006G125100 Sobic004G001000--Sobic006G125100 Sobic010G151200 Sobic010G151200 Sobic004G001000--Sobic010G151200 Sobic002G320800 Sobic002G320800 Sobic004G001000--Sobic002G320800 Sobic007G161400 Sobic007G161400 Sobic004G001000--Sobic007G161400 Sobic010G110800 Sobic010G110800 Sobic004G001000--Sobic010G110800 Sobic001G242800--Sobic002G392800 Sobic001G242800--Sobic002G319200 Sobic004G152200 Sobic004G152200 Sobic001G242800--Sobic004G152200 Sobic008G004100 Sobic008G004100 Sobic001G242800--Sobic008G004100 Sobic001G112700 Sobic001G112700 Sobic001G242800--Sobic001G112700 Sobic009G126500 Sobic009G126500 Sobic001G242800--Sobic009G126500 Sobic001G432300 Sobic001G432300 Sobic001G242800--Sobic001G432300 Sobic009G151700 Sobic009G151700 Sobic001G242800--Sobic009G151700 Sobic006G177300 Sobic006G177300 Sobic001G242800--Sobic006G177300 Sobic006G211200 Sobic006G211200 Sobic009G117000--Sobic006G211200 Sobic007G019000 Sobic007G019000 Sobic009G117000--Sobic007G019000 Sobic002G115000 Sobic002G115000 Sobic009G117000--Sobic002G115000 Sobic001G377800 Sobic001G377800 Sobic009G117000--Sobic001G377800 Sobic004G322200 Sobic004G322200 Sobic009G117000--Sobic004G322200 Sobic006G138100 Sobic006G138100 Sobic009G117000--Sobic006G138100 Sobic009G117000--Sobic008G058300 Sobic006G216600 Sobic006G216600 Sobic009G117000--Sobic006G216600 Sobic006G052400 Sobic006G052400 Sobic009G117000--Sobic006G052400 Sobic002G045100 Sobic002G045100 Sobic002G319200--Sobic002G045100 Sobic002G319200--Sobic001G242800 Sobic001G371100 Sobic001G371100 Sobic002G319200--Sobic001G371100 Sobic005G211200 Sobic005G211200 Sobic002G319200--Sobic005G211200 Sobic010G032700 Sobic010G032700 Sobic002G319200--Sobic010G032700 Sobic002G319200--Sobic001G528600 Sobic002G319200--Sobic004G152200 Sobic002G319200--Sobic009G126500 Sobic002G161700 Sobic002G161700 Sobic002G319200--Sobic002G161700 Sobic001G131100--Sobic009G129500 Sobic002G303700 Sobic002G303700 Sobic001G131100--Sobic002G303700 Sobic010G122800 Sobic010G122800 Sobic001G131100--Sobic010G122800 Sobic001G131100--Sobic009G024600 Sobic006G014000 Sobic006G014000 Sobic001G131100--Sobic006G014000 Sobic009G102300 Sobic009G102300 Sobic001G131100--Sobic009G102300 Sobic005G000100 Sobic005G000100 Sobic001G131100--Sobic005G000100 Sobic001G131100--Sobic001G445000 Sobic001G131100--Sobic002G392800 Sobic002G392800--Sobic001G242800 Sobic002G392800--Sobic001G112700 Sobic002G392800--Sobic008G004100 Sobic003G160900 Sobic003G160900 Sobic002G392800--Sobic003G160900 Sobic010G080500 Sobic010G080500 Sobic002G392800--Sobic010G080500 Sobic006G002700 Sobic006G002700 Sobic002G392800--Sobic006G002700 Sobic009G238900 Sobic009G238900 Sobic002G392800--Sobic009G238900 Sobic002G392800--Sobic009G117000 Sobic008G132700 Sobic008G132700 Sobic002G392800--Sobic008G132700
Octagon: transcription factors


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