Gene annotation
Transcriptome id Sobic.001G442500.1
Synonym Sb01g041580
Functional annotation endonuclease/exonuclease/phosphatase family domain containing protein, expressed
UniProt A0A1B6QPG1
Pfam PF03372
Panther DB PTHR11200 PTHR11200:SF141
NCBI CDD KOG0565; Inositol polyphosphate 5-phosphatase and related proteins
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G01900 : DNAse I-like superfamily protein
RAP-DB (Rice) LOC_Os03g13520.1 : endonuclease/exonuclease/phosphatase family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a052942 , Zm00025a001497
Brachypodium KQJ98328 , PNT77776 , PNT77775 , KQK22666
Barley HORVU4Hr1G064440.1 , HORVU4Hr1G064440.2 , HORVU4Hr1G064440.3 , HORVU4Hr1G064440.4 , HORVU4Hr1G064440.5 , HORVU4Hr1G064440.6
Wheat TraesCS4A02G073900 , TraesCSU02G006000 , TraesCS1A02G039300 , TraesCS1B02G052100 , TraesCS4D02G231500 , TraesCS4B02G230100
Populus -


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cDNA sequences
Sobic.001G442500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G353200 ctr copper transporter family protein, putative, expressed K14686: SLC31A1, solute carrier family 31 (copper transporter), member 1
2 Sobic.009G204900 receptor-like protein kinase, putative, expressed -
3 Sobic.006G101900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
4 Sobic.001G162200 expressed protein -
5 Sobic.007G089900 4-Coumarate-CoA ligase(PubMedID : 22313236)@AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
6 Sobic.003G280000 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
7 Sobic.001G421000 protein phosphatase 2C, putative, expressed -
8 Sobic.005G202300 integral membrane protein TIGR01569 containing protein, expressed -
9 Sobic.010G187500 CRAL/TRIO domain containing protein, expressed -
10 Sobic.005G110541 - K16054: methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1
11 Sobic.006G014000 erythronate-4-phosphate dehydrogenase domain containing protein, expressed K15919: glyoxylate/hydroxypyruvate reductase
12 Sobic.001G218400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MATH domain containing protein, expressed -
13 Sobic.006G106900 "cell wall modification, deposition of casparian strips, endodermis, transmembrane"(PubMedID : 24920445)@membrane associated DUF588 domain containing protein, putative, expressed -
14 Sobic.003G353200 similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Laccase 2 LAC2 (Os)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
15 Sobic.005G033000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
16 Sobic.001G301000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expansin precursor, putative, expressed -
17 Sobic.003G319400 receptor protein kinase, putative, expressed -
18 Sobic.001G181600 dehydrogenase/reductase, putative, expressed -
19 Sobic.003G441700 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
20 Sobic.003G053200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant


Gene co-expression network
sample Sobic001G442500 Sobic001G442500 Sobic001G353200 Sobic001G353200 Sobic001G442500--Sobic001G353200 Sobic009G204900 Sobic009G204900 Sobic001G442500--Sobic009G204900 Sobic006G101900 Sobic006G101900 Sobic001G442500--Sobic006G101900 Sobic001G162200 Sobic001G162200 Sobic001G442500--Sobic001G162200 Sobic007G089900 Sobic007G089900 Sobic001G442500--Sobic007G089900 Sobic003G280000 Sobic003G280000 Sobic001G442500--Sobic003G280000 Sobic001G421000 Sobic001G421000 Sobic001G442500--Sobic001G421000 Sobic005G202300 Sobic005G202300 Sobic001G442500--Sobic005G202300 Sobic010G187500 Sobic010G187500 Sobic001G442500--Sobic010G187500 Sobic007G193200 Sobic007G193200 Sobic001G353200--Sobic007G193200 Sobic001G243150 Sobic001G243150 Sobic001G353200--Sobic001G243150 Sobic005G046400 Sobic005G046400 Sobic001G353200--Sobic005G046400 Sobic009G065700 Sobic009G065700 Sobic001G353200--Sobic009G065700 Sobic002G111900 Sobic002G111900 Sobic001G353200--Sobic002G111900 Sobic010G191600 Sobic010G191600 Sobic001G353200--Sobic010G191600 Sobic009G225800 Sobic009G225800 Sobic001G353200--Sobic009G225800 Sobic003G441800 Sobic003G441800 Sobic001G353200--Sobic003G441800 Sobic002G289500 Sobic002G289500 Sobic001G353200--Sobic002G289500 Sobic004G121800 Sobic004G121800 Sobic009G204900--Sobic004G121800 Sobic008G099300 Sobic008G099300 Sobic009G204900--Sobic008G099300 Sobic001G272800 Sobic001G272800 Sobic009G204900--Sobic001G272800 Sobic004G121600 Sobic004G121600 Sobic009G204900--Sobic004G121600 Sobic001G342000 Sobic001G342000 Sobic009G204900--Sobic001G342000 Sobic002G196000 Sobic002G196000 Sobic009G204900--Sobic002G196000 Sobic010G214300 Sobic010G214300 Sobic009G204900--Sobic010G214300 Sobic001G522200 Sobic001G522200 Sobic009G204900--Sobic001G522200 Sobic009G204900--Sobic002G111900 Sobic001G414800 Sobic001G414800 Sobic006G101900--Sobic001G414800 Sobic005G097400 Sobic005G097400 Sobic006G101900--Sobic005G097400 Sobic001G499900 Sobic001G499900 Sobic006G101900--Sobic001G499900 Sobic006G133300 Sobic006G133300 Sobic006G101900--Sobic006G133300 Sobic006G101900--Sobic009G225800 Sobic006G101900--Sobic010G191600 Sobic001G507100 Sobic001G507100 Sobic006G101900--Sobic001G507100 Sobic008G022100 Sobic008G022100 Sobic006G101900--Sobic008G022100 Sobic003G167300 Sobic003G167300 Sobic006G101900--Sobic003G167300 Sobic008G074500 Sobic008G074500 Sobic001G162200--Sobic008G074500 Sobic001G162200--Sobic001G442500 Sobic006G014000 Sobic006G014000 Sobic001G162200--Sobic006G014000 Sobic001G528300 Sobic001G528300 Sobic001G162200--Sobic001G528300 Sobic004G349300 Sobic004G349300 Sobic001G162200--Sobic004G349300 Sobic009G038200 Sobic009G038200 Sobic001G162200--Sobic009G038200 Sobic003G237000 Sobic003G237000 Sobic001G162200--Sobic003G237000 Sobic006G031200 Sobic006G031200 Sobic001G162200--Sobic006G031200 Sobic001G384500 Sobic001G384500 Sobic001G162200--Sobic001G384500 Sobic007G089900--Sobic008G099300 Sobic010G018600 Sobic010G018600 Sobic007G089900--Sobic010G018600 Sobic002G323600 Sobic002G323600 Sobic007G089900--Sobic002G323600 Sobic001G443100 Sobic001G443100 Sobic007G089900--Sobic001G443100 Sobic005G069000 Sobic005G069000 Sobic007G089900--Sobic005G069000 Sobic007G089900--Sobic007G193200 Sobic007G089900--Sobic001G442500 Sobic005G110541 Sobic005G110541 Sobic007G089900--Sobic005G110541 Sobic007G089900--Sobic009G225800 Sobic003G280000--Sobic005G202300 Sobic003G353200 Sobic003G353200 Sobic003G280000--Sobic003G353200 Sobic006G106900 Sobic006G106900 Sobic003G280000--Sobic006G106900 Sobic003G319400 Sobic003G319400 Sobic003G280000--Sobic003G319400 Sobic010G031700 Sobic010G031700 Sobic003G280000--Sobic010G031700 Sobic003G053200 Sobic003G053200 Sobic003G280000--Sobic003G053200 Sobic003G257400 Sobic003G257400 Sobic003G280000--Sobic003G257400 Sobic009G181600 Sobic009G181600 Sobic003G280000--Sobic009G181600 Sobic001G218400 Sobic001G218400 Sobic003G280000--Sobic001G218400 Sobic001G421000--Sobic003G257400 Sobic001G421000--Sobic006G106900 Sobic001G421000--Sobic003G280000 Sobic001G421000--Sobic009G181600 Sobic004G119800 Sobic004G119800 Sobic001G421000--Sobic004G119800 Sobic001G421000--Sobic005G202300 Sobic004G306900 Sobic004G306900 Sobic001G421000--Sobic004G306900 Sobic007G086300 Sobic007G086300 Sobic001G421000--Sobic007G086300 Sobic003G000100 Sobic003G000100 Sobic001G421000--Sobic003G000100 Sobic005G202300--Sobic006G106900 Sobic005G202300--Sobic003G319400 Sobic005G202300--Sobic003G280000 Sobic005G202300--Sobic009G181600 Sobic005G202300--Sobic003G053200 Sobic005G202300--Sobic010G031700 Sobic005G202300--Sobic003G353200 Sobic004G029400 Sobic004G029400 Sobic005G202300--Sobic004G029400 Sobic001G058300 Sobic001G058300 Sobic005G202300--Sobic001G058300 Sobic010G187500--Sobic005G110541 Sobic005G100800 Sobic005G100800 Sobic010G187500--Sobic005G100800 Sobic002G030650 Sobic002G030650 Sobic010G187500--Sobic002G030650 Sobic010G093300 Sobic010G093300 Sobic010G187500--Sobic010G093300 Sobic010G187500--Sobic007G193200 Sobic010G187500--Sobic001G353200 Sobic003G023600 Sobic003G023600 Sobic010G187500--Sobic003G023600 Sobic006G224500 Sobic006G224500 Sobic010G187500--Sobic006G224500 Sobic005G194900 Sobic005G194900 Sobic010G187500--Sobic005G194900
Octagon: transcription factors


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