Gene annotation
Transcriptome id Sobic.007G089900.1
Synonym 4CL.1, 4CL1, Sb07g007810, AT4CL1
Functional annotation 4-Coumarate-CoA ligase (PubMedID : 22313236)
AMP-binding domain containing protein, expressed
UniProt C5YJI8
Pfam PF13193 PF00501
Panther DB PTHR24096 PTHR24096:SF217
NCBI CDD KOG1176; Acyl-CoA synthetase
KEGG Orthology K01904; 4-coumarate--CoA ligase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT3G21240 : 4-coumarate:CoA ligase 2
RAP-DB (Rice) LOC_Os08g14760.1 : AMP-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a051700 , Zm00025a019174 , Zm00025a030940
Brachypodium KQK00870 , KQK16898 , KQJ93616 , KQJ95780 , KQK16897 , KQJ98507
Barley HORVU7Hr1G111130.4 , HORVU7Hr1G111130.6 , HORVU7Hr1G111130.7 , HORVU7Hr1G111130.2 , HORVU7Hr1G111130.3 , HORVU6Hr1G030390.3 , HORVU6Hr1G030390.2 , HORVU6Hr1G030390.5 , HORVU7Hr1G111130.5 , HORVU0Hr1G002720.3 , HORVU0Hr1G002720.2 , HORVU0Hr1G002720.5 , HORVU0Hr1G002720.4 , HORVU0Hr1G002720.7 , HORVU0Hr1G002720.6
Wheat TraesCS6A02G151700 , TraesCS7D02G483400 , TraesCS6D02G141700 , TraesCS2B02G171200 , TraesCS7A02G496200 , TraesCS6B02G179900 , TraesCS6B02G179900
Populus -


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cDNA sequences
Sobic.007G089900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G099300 cysteine-rich receptor-like protein kinase 7 precursor, putative, expressed -
2 Sobic.010G018600 retinol dehydrogenase, putative, expressed -
3 Sobic.002G323600 lipase class 3 family protein, putative, expressed -
4 Sobic.001G443100 Oxidoreductase superfamily protein("PubMedID : 26759170,PubMedID : 24597475")@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
5 Sobic.005G069000 OsWAK124 - OsWAK receptor-like protein OsWAK-RLP, expressed -
6 Sobic.007G193200 MTA/SAH nucleosidase, putative, expressed K01244: 5'-methylthioadenosine nucleosidase
7 Sobic.001G442500 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
8 Sobic.005G110541 - K16054: methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1
9 Sobic.009G225800 expressed protein -
10 Sobic.005G033000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
11 Sobic.001G353200 ctr copper transporter family protein, putative, expressed K14686: SLC31A1, solute carrier family 31 (copper transporter), member 1
12 Sobic.008G099600 cysteine-rich receptor-like protein kinase 7 precursor, putative, expressed K04730: interleukin-1 receptor-associated kinase 1
13 Sobic.003G105000 kinase, pfkB family, putative, expressed -
14 Sobic.006G101900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
15 Sobic.004G289000 protein kinase, putative, expressed -
16 Sobic.009G204900 receptor-like protein kinase, putative, expressed -
17 Sobic.008G099232 - -
18 Sobic.004G261500 phosphoribosyl transferase, putative, expressed -
19 Sobic.006G201700 wall-associated kinase 1, putative, expressed -
20 Sobic.003G441700 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -


Gene co-expression network
sample Sobic007G089900 Sobic007G089900 Sobic008G099300 Sobic008G099300 Sobic007G089900--Sobic008G099300 Sobic010G018600 Sobic010G018600 Sobic007G089900--Sobic010G018600 Sobic002G323600 Sobic002G323600 Sobic007G089900--Sobic002G323600 Sobic001G443100 Sobic001G443100 Sobic007G089900--Sobic001G443100 Sobic005G069000 Sobic005G069000 Sobic007G089900--Sobic005G069000 Sobic007G193200 Sobic007G193200 Sobic007G089900--Sobic007G193200 Sobic001G442500 Sobic001G442500 Sobic007G089900--Sobic001G442500 Sobic005G110541 Sobic005G110541 Sobic007G089900--Sobic005G110541 Sobic009G225800 Sobic009G225800 Sobic007G089900--Sobic009G225800 Sobic008G099232 Sobic008G099232 Sobic008G099300--Sobic008G099232 Sobic005G217766 Sobic005G217766 Sobic008G099300--Sobic005G217766 Sobic002G111900 Sobic002G111900 Sobic008G099300--Sobic002G111900 Sobic008G099300--Sobic009G225800 Sobic010G010000 Sobic010G010000 Sobic008G099300--Sobic010G010000 Sobic007G220400 Sobic007G220400 Sobic008G099300--Sobic007G220400 Sobic009G065700 Sobic009G065700 Sobic008G099300--Sobic009G065700 Sobic001G414800 Sobic001G414800 Sobic008G099300--Sobic001G414800 Sobic004G119800 Sobic004G119800 Sobic008G099300--Sobic004G119800 Sobic005G069166 Sobic005G069166 Sobic010G018600--Sobic005G069166 Sobic004G299500 Sobic004G299500 Sobic010G018600--Sobic004G299500 Sobic006G230100 Sobic006G230100 Sobic010G018600--Sobic006G230100 Sobic007G202480 Sobic007G202480 Sobic010G018600--Sobic007G202480 Sobic004G261500 Sobic004G261500 Sobic010G018600--Sobic004G261500 Sobic001G395900 Sobic001G395900 Sobic010G018600--Sobic001G395900 Sobic006G229901 Sobic006G229901 Sobic010G018600--Sobic006G229901 Sobic008G058600 Sobic008G058600 Sobic010G018600--Sobic008G058600 Sobic007G015000 Sobic007G015000 Sobic010G018600--Sobic007G015000 Sobic002G323600--Sobic007G089900 Sobic001G482000 Sobic001G482000 Sobic002G323600--Sobic001G482000 Sobic002G323600--Sobic001G442500 Sobic004G231700 Sobic004G231700 Sobic002G323600--Sobic004G231700 Sobic009G076300 Sobic009G076300 Sobic002G323600--Sobic009G076300 Sobic006G031200 Sobic006G031200 Sobic002G323600--Sobic006G031200 Sobic002G173500 Sobic002G173500 Sobic002G323600--Sobic002G173500 Sobic010G117500 Sobic010G117500 Sobic002G323600--Sobic010G117500 Sobic002G323600--Sobic008G099300 Sobic001G443100--Sobic004G261500 Sobic001G443100--Sobic001G395900 Sobic005G101000 Sobic005G101000 Sobic001G443100--Sobic005G101000 Sobic002G082000 Sobic002G082000 Sobic001G443100--Sobic002G082000 Sobic001G443100--Sobic006G230100 Sobic003G154500 Sobic003G154500 Sobic001G443100--Sobic003G154500 Sobic005G033000 Sobic005G033000 Sobic001G443100--Sobic005G033000 Sobic006G230200 Sobic006G230200 Sobic001G443100--Sobic006G230200 Sobic001G443100--Sobic008G058600 Sobic007G057300 Sobic007G057300 Sobic005G069000--Sobic007G057300 Sobic003G428800 Sobic003G428800 Sobic005G069000--Sobic003G428800 Sobic001G278500 Sobic001G278500 Sobic005G069000--Sobic001G278500 Sobic005G069000--Sobic009G225800 Sobic008G099600 Sobic008G099600 Sobic005G069000--Sobic008G099600 Sobic005G068900 Sobic005G068900 Sobic005G069000--Sobic005G068900 Sobic008G008801 Sobic008G008801 Sobic005G069000--Sobic008G008801 Sobic007G015100 Sobic007G015100 Sobic005G069000--Sobic007G015100 Sobic005G069000--Sobic008G099300 Sobic007G193200--Sobic004G261500 Sobic004G079900 Sobic004G079900 Sobic007G193200--Sobic004G079900 Sobic001G181600 Sobic001G181600 Sobic007G193200--Sobic001G181600 Sobic007G193200--Sobic003G154500 Sobic001G218400 Sobic001G218400 Sobic007G193200--Sobic001G218400 Sobic007G193200--Sobic005G033000 Sobic001G454900 Sobic001G454900 Sobic007G193200--Sobic001G454900 Sobic005G119900 Sobic005G119900 Sobic007G193200--Sobic005G119900 Sobic003G441800 Sobic003G441800 Sobic007G193200--Sobic003G441800 Sobic001G353200 Sobic001G353200 Sobic001G442500--Sobic001G353200 Sobic009G204900 Sobic009G204900 Sobic001G442500--Sobic009G204900 Sobic006G101900 Sobic006G101900 Sobic001G442500--Sobic006G101900 Sobic001G162200 Sobic001G162200 Sobic001G442500--Sobic001G162200 Sobic001G442500--Sobic007G089900 Sobic003G280000 Sobic003G280000 Sobic001G442500--Sobic003G280000 Sobic001G421000 Sobic001G421000 Sobic001G442500--Sobic001G421000 Sobic005G202300 Sobic005G202300 Sobic001G442500--Sobic005G202300 Sobic010G187500 Sobic010G187500 Sobic001G442500--Sobic010G187500 Sobic005G100800 Sobic005G100800 Sobic005G110541--Sobic005G100800 Sobic005G110541--Sobic007G193200 Sobic005G110541--Sobic001G353200 Sobic005G110541--Sobic010G187500 Sobic005G110541--Sobic004G261500 Sobic005G110541--Sobic001G443100 Sobic007G212000 Sobic007G212000 Sobic005G110541--Sobic007G212000 Sobic001G243100 Sobic001G243100 Sobic005G110541--Sobic001G243100 Sobic005G110541--Sobic004G299500 Sobic006G047200 Sobic006G047200 Sobic009G225800--Sobic006G047200 Sobic002G392000 Sobic002G392000 Sobic009G225800--Sobic002G392000 Sobic006G171100 Sobic006G171100 Sobic009G225800--Sobic006G171100 Sobic010G241900 Sobic010G241900 Sobic009G225800--Sobic010G241900 Sobic009G136800 Sobic009G136800 Sobic009G225800--Sobic009G136800 Sobic005G035900 Sobic005G035900 Sobic009G225800--Sobic005G035900 Sobic002G391300 Sobic002G391300 Sobic009G225800--Sobic002G391300 Sobic005G046400 Sobic005G046400 Sobic009G225800--Sobic005G046400 Sobic001G499900 Sobic001G499900 Sobic009G225800--Sobic001G499900
Octagon: transcription factors


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