Gene annotation
Transcriptome id Sobic.010G018600.1
Synonym Sb10g001800
Functional annotation retinol dehydrogenase, putative, expressed
UniProt C5Z385
Pfam PF00106
Panther DB PTHR24320 PTHR24320:SF81
NCBI CDD KOG1208; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT4G24050 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os06g03830.1 : retinol dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a000223 , Zm00025a050193
Brachypodium KQK19670
Barley HORVU7Hr1G011180.8 , HORVU7Hr1G011180.9 , HORVU7Hr1G011180.2 , HORVU7Hr1G011180.3 , HORVU7Hr1G011180.6 , HORVU7Hr1G011180.7 , HORVU7Hr1G011180.12 , HORVU7Hr1G011180.10 , HORVU7Hr1G011180.11 , HORVU7Hr1G011180.13 , HORVU4Hr1G086380.5 , HORVU4Hr1G086380.4 , HORVU4Hr1G086380.3 , HORVU4Hr1G086380.2 , HORVU4Hr1G086380.1
Wheat TraesCS4B02G358300 , TraesCS4D02G003400 , TraesCS4D02G003400 , TraesCS4B02G358400 , TraesCS4D02G351700 , TraesCS4D02G351800 , TraesCS4A02G428800 , TraesCS7D02G055800 , TraesCS4B02G358200 , TraesCS7A02G061000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G069166 - -
2 Sobic.004G299500 - -
3 Sobic.006G230100 TKL_IRAK_DUF26-ld.1 - DUF26 kinases have homology to DUF26 containing loci, expressed -
4 Sobic.007G202480 - -
5 Sobic.004G261500 phosphoribosyl transferase, putative, expressed -
6 Sobic.001G395900 Nicotianamine synthase 4("PubMedID : 26759170,PubMedID : 24597475")@nicotianamine synthase, putative, expressed K05953: nicotianamine synthase
7 Sobic.006G229901 - -
8 Sobic.008G058600 protein kinase family protein, putative, expressed -
9 Sobic.007G015000 methyltransferase domain containing protein, expressed -
10 Sobic.001G153100 sulfate transporter, putative, expressed K17470: sulfate transporter 1, high-affinity
11 Sobic.005G069332 - -
12 Sobic.006G230200 TKL_IRAK_DUF26-ld.1 - DUF26 kinases have homology to DUF26 containing loci, expressed -
13 Sobic.008G105800 cytochrome P450, putative, expressed -
14 Sobic.007G015100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@cytochrome P450, putative, expressed -
15 Sobic.006G121000 purine permease, putative, expressed -
16 Sobic.001G415100 terpene synthase, putative, expressed -
17 Sobic.005G101000 - -
18 Sobic.007G212000 receptor-like protein kinase precursor, putative, expressed -
19 Sobic.003G045650 - -
20 Sobic.009G055300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase


Gene co-expression network
sample Sobic010G018600 Sobic010G018600 Sobic005G069166 Sobic005G069166 Sobic010G018600--Sobic005G069166 Sobic004G299500 Sobic004G299500 Sobic010G018600--Sobic004G299500 Sobic006G230100 Sobic006G230100 Sobic010G018600--Sobic006G230100 Sobic007G202480 Sobic007G202480 Sobic010G018600--Sobic007G202480 Sobic004G261500 Sobic004G261500 Sobic010G018600--Sobic004G261500 Sobic001G395900 Sobic001G395900 Sobic010G018600--Sobic001G395900 Sobic006G229901 Sobic006G229901 Sobic010G018600--Sobic006G229901 Sobic008G058600 Sobic008G058600 Sobic010G018600--Sobic008G058600 Sobic007G015000 Sobic007G015000 Sobic010G018600--Sobic007G015000 Sobic005G069166--Sobic004G299500 Sobic005G069332 Sobic005G069332 Sobic005G069166--Sobic005G069332 Sobic005G069166--Sobic006G230100 Sobic005G069166--Sobic007G202480 Sobic001G153100 Sobic001G153100 Sobic005G069166--Sobic001G153100 Sobic005G069166--Sobic006G229901 Sobic008G105800 Sobic008G105800 Sobic005G069166--Sobic008G105800 Sobic005G069166--Sobic001G395900 Sobic005G069166--Sobic007G015000 Sobic004G299500--Sobic006G230100 Sobic004G299500--Sobic001G395900 Sobic004G299500--Sobic007G202480 Sobic004G299500--Sobic005G069166 Sobic004G299500--Sobic006G229901 Sobic004G299500--Sobic007G015000 Sobic004G299500--Sobic005G069332 Sobic004G299500--Sobic001G153100 Sobic004G299500--Sobic008G058600 Sobic006G230100--Sobic004G299500 Sobic006G230100--Sobic001G395900 Sobic006G230100--Sobic007G202480 Sobic006G230100--Sobic007G015000 Sobic006G230100--Sobic005G069166 Sobic009G055300 Sobic009G055300 Sobic006G230100--Sobic009G055300 Sobic006G230200 Sobic006G230200 Sobic006G230100--Sobic006G230200 Sobic006G230100--Sobic001G153100 Sobic006G230100--Sobic006G229901 Sobic007G202480--Sobic001G395900 Sobic007G202480--Sobic006G229901 Sobic007G202480--Sobic004G299500 Sobic007G202480--Sobic006G230100 Sobic007G202480--Sobic005G069166 Sobic007G202480--Sobic001G153100 Sobic007G202480--Sobic006G230200 Sobic007G202480--Sobic005G069332 Sobic007G202480--Sobic008G105800 Sobic004G261500--Sobic001G395900 Sobic005G101000 Sobic005G101000 Sobic004G261500--Sobic005G101000 Sobic004G261500--Sobic006G230100 Sobic004G261500--Sobic004G299500 Sobic004G261500--Sobic008G058600 Sobic004G261500--Sobic007G202480 Sobic004G261500--Sobic006G230200 Sobic004G261500--Sobic001G153100 Sobic003G154500 Sobic003G154500 Sobic004G261500--Sobic003G154500 Sobic001G395900--Sobic007G202480 Sobic001G395900--Sobic004G299500 Sobic001G395900--Sobic005G101000 Sobic001G395900--Sobic006G230100 Sobic001G395900--Sobic006G230200 Sobic001G395900--Sobic008G058600 Sobic001G395900--Sobic006G229901 Sobic001G395900--Sobic004G261500 Sobic001G395900--Sobic005G069166 Sobic006G229901--Sobic007G202480 Sobic006G229901--Sobic004G299500 Sobic003G045650 Sobic003G045650 Sobic006G229901--Sobic003G045650 Sobic006G229901--Sobic001G395900 Sobic006G229901--Sobic006G230100 Sobic006G229901--Sobic001G153100 Sobic006G229901--Sobic005G069166 Sobic006G229901--Sobic008G058600 Sobic006G229901--Sobic005G069332 Sobic008G058600--Sobic005G101000 Sobic008G058600--Sobic003G045650 Sobic008G058600--Sobic001G395900 Sobic008G058600--Sobic004G299500 Sobic001G234100 Sobic001G234100 Sobic008G058600--Sobic001G234100 Sobic005G176600 Sobic005G176600 Sobic008G058600--Sobic005G176600 Sobic008G058600--Sobic007G202480 Sobic008G058600--Sobic006G230100 Sobic008G058600--Sobic006G229901 Sobic007G015000--Sobic006G230100 Sobic007G015000--Sobic004G299500 Sobic001G293100 Sobic001G293100 Sobic007G015000--Sobic001G293100 Sobic001G415100 Sobic001G415100 Sobic007G015000--Sobic001G415100 Sobic007G212000 Sobic007G212000 Sobic007G015000--Sobic007G212000 Sobic005G097900 Sobic005G097900 Sobic007G015000--Sobic005G097900 Sobic007G015000--Sobic005G069166 Sobic007G015000--Sobic007G202480 Sobic007G015000--Sobic008G105800
Octagon: transcription factors


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