Gene annotation
Transcriptome id Sobic.010G044500.1,Sobic.010G044500.2
Synonym Sb10g003890
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
GDSL-like lipase/acylhydrolase, putative, expressed
UniProt A0A194YH87 , A0A194YIA9
Pfam PF00657
Panther DB PTHR22835 PTHR22835:SF220
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016788; hydrolase activity, acting on ester bonds


Orthologs (automatic annotation)
TAIR AT5G45910 : GDSL-like Lipase/Acylhydrolase superfamily protein
RAP-DB (Rice) LOC_Os06g06250.2 : GDSL-like lipase/acylhydrolase, putative, expressed
MaizeGDB (Corn) Zm00025a037597 , Zm00025a019854 , Zm00025a041574 , Zm00025a041575 , Zm00025a041578 , Zm00025a035918 , Zm00025a049986
Brachypodium KQK19554 , KQK19553 , KQK07048 , KQK07045 , KQK07046 , KQK07047 , KQK19535 , PNT70157 , KQK03301 , KQK03300 , KQK03305 , KQK03304 , KQK12157
Barley HORVU1Hr1G066090.1 , HORVU1Hr1G066090.2 , HORVU1Hr1G066090.3 , HORVU1Hr1G066090.4 , HORVU0Hr1G031170.2 , HORVU0Hr1G031170.3 , HORVU0Hr1G031170.4 , HORVU0Hr1G031170.5 , HORVU7Hr1G024220.3 , HORVU7Hr1G024220.2 , HORVU7Hr1G024220.7 , HORVU7Hr1G024220.4 , HORVU1Hr1G084390.12 , HORVU1Hr1G084390.11 , HORVU1Hr1G084390.10 , HORVU1Hr1G084390.3 , HORVU1Hr1G084390.2 , HORVU1Hr1G084390.1 , HORVU1Hr1G084390.7 , HORVU1Hr1G084390.6 , HORVU1Hr1G084390.5 , HORVU1Hr1G084390.4 , HORVU3Hr1G028060.4 , HORVU1Hr1G084390.9 , HORVU1Hr1G084390.8 , HORVU3Hr1G028060.3 , HORVU3Hr1G028060.2 , HORVU3Hr1G028020.1 , HORVU3Hr1G028020.3 , HORVU3Hr1G028020.2 , HORVU3Hr1G028020.5 , HORVU3Hr1G028020.4 , HORVU3Hr1G028020.7 , HORVU3Hr1G028020.6 , HORVU3Hr1G028020.8 , HORVU3Hr1G028000.3 , HORVU3Hr1G028000.2 , HORVU3Hr1G028000.1 , HORVU4Hr1G034710.1 , HORVU4Hr1G034710.3 , HORVU4Hr1G034710.2 , HORVU7Hr1G063440.1 , HORVU7Hr1G024220.8 , HORVU7Hr1G024220.1 , HORVU7Hr1G024220.6 , HORVU7Hr1G024220.5 , HORVU3Hr1G028080.2 , HORVU3Hr1G028080.1 , HORVU0Hr1G006800.1 , HORVU0Hr1G006800.2
Wheat TraesCS3A02G141300 , TraesCS1A02G382200 , TraesCS5A02G287100 , TraesCS3B02G163700 , TraesCS3B02G163700 , TraesCS1B02G333800 , TraesCS7D02G108900 , TraesCSU02G095400 , TraesCS4A02G341500 , TraesCSU02G158200 , TraesCS5A02G394300 , TraesCS3A02G140800 , TraesCS3B02G163300 , TraesCS5D02G531400 , TraesCS1D02G321300 , TraesCS7A02G113600 , TraesCS3D02G146200 , TraesCS3A02G140900 , TraesCS5D02G531400 , TraesCS3A02G141100 , TraesCSU02G168000 , TraesCS1B02G407300 , TraesCS1A02G321100 , TraesCS1D02G389900 , TraesCS3D02G145800 , TraesCS1B02G407500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G044500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G293100 phosphatase, putative, expressed -
2 Sobic.002G007100 eukaryotic translation initiation factor 5A, putative, expressed K03263: translation initiation factor 5A
3 Sobic.003G015400 ribosomal protein S6 family protein, putative, expressed K02990: RP-S6, MRPS6, small subunit ribosomal protein S6
4 Sobic.001G107100 "SRS5(Ortholog in rice:Segami, 2012)"(PubMedID : 31659833)@tubulin/FtsZ domain containing protein, putative, expressed K07374: tubulin alpha
5 Sobic.001G202400 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed K17278: membrane-associated progesterone receptor component
6 Sobic.006G171200 expansin B2("PubMedID : 26759170,PubMedID : 24597475")@expansin precursor, putative, expressed -
7 Sobic.004G298500 cyclin, putative, expressed -
8 Sobic.002G233500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
9 Sobic.003G181600 early-responsive to dehydration protein-related, putative, expressed -
10 Sobic.001G505100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09873: aquaporin TIP
11 Sobic.010G086800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
12 Sobic.008G135701 - -
13 Sobic.009G129500 cyclin, putative, expressed -
14 Sobic.007G090436 - K08235: xyloglucan:xyloglucosyl transferase
15 Sobic.004G196400 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
16 Sobic.009G198300 expressed protein -
17 Sobic.006G052400 LSM domain containing protein, expressed K12625: U6 snRNA-associated Sm-like protein LSm6
18 Sobic.003G055500 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
19 Sobic.001G341300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATP-dependent protease, putative, expressed -
20 Sobic.001G107200 tubulin/FtsZ domain containing protein, putative, expressed K07374: tubulin alpha


Gene co-expression network
sample Sobic010G044500 Sobic010G044500 Sobic004G293100 Sobic004G293100 Sobic010G044500--Sobic004G293100 Sobic002G007100 Sobic002G007100 Sobic010G044500--Sobic002G007100 Sobic003G015400 Sobic003G015400 Sobic010G044500--Sobic003G015400 Sobic001G107100 Sobic001G107100 Sobic010G044500--Sobic001G107100 Sobic001G202400 Sobic001G202400 Sobic010G044500--Sobic001G202400 Sobic006G171200 Sobic006G171200 Sobic010G044500--Sobic006G171200 Sobic004G298500 Sobic004G298500 Sobic010G044500--Sobic004G298500 Sobic002G233500 Sobic002G233500 Sobic010G044500--Sobic002G233500 Sobic003G181600 Sobic003G181600 Sobic010G044500--Sobic003G181600 Sobic004G293100--Sobic003G015400 Sobic002G263100 Sobic002G263100 Sobic004G293100--Sobic002G263100 Sobic009G024500 Sobic009G024500 Sobic004G293100--Sobic009G024500 Sobic004G151400 Sobic004G151400 Sobic004G293100--Sobic004G151400 Sobic003G305100 Sobic003G305100 Sobic004G293100--Sobic003G305100 Sobic008G021100 Sobic008G021100 Sobic004G293100--Sobic008G021100 Sobic007G177200 Sobic007G177200 Sobic004G293100--Sobic007G177200 Sobic007G134900 Sobic007G134900 Sobic004G293100--Sobic007G134900 Sobic008G127500 Sobic008G127500 Sobic004G293100--Sobic008G127500 Sobic005G157200 Sobic005G157200 Sobic002G007100--Sobic005G157200 Sobic003G025200 Sobic003G025200 Sobic002G007100--Sobic003G025200 Sobic010G029400 Sobic010G029400 Sobic002G007100--Sobic010G029400 Sobic008G058300 Sobic008G058300 Sobic002G007100--Sobic008G058300 Sobic002G406500 Sobic002G406500 Sobic002G007100--Sobic002G406500 Sobic004G196400 Sobic004G196400 Sobic002G007100--Sobic004G196400 Sobic006G201500 Sobic006G201500 Sobic002G007100--Sobic006G201500 Sobic003G280700 Sobic003G280700 Sobic002G007100--Sobic003G280700 Sobic006G081100 Sobic006G081100 Sobic002G007100--Sobic006G081100 Sobic007G034400 Sobic007G034400 Sobic003G015400--Sobic007G034400 Sobic003G015400--Sobic008G021100 Sobic010G005300 Sobic010G005300 Sobic003G015400--Sobic010G005300 Sobic003G015400--Sobic001G202400 Sobic003G015400--Sobic004G293100 Sobic001G510800 Sobic001G510800 Sobic003G015400--Sobic001G510800 Sobic006G281200 Sobic006G281200 Sobic003G015400--Sobic006G281200 Sobic001G058900 Sobic001G058900 Sobic003G015400--Sobic001G058900 Sobic009G062000 Sobic009G062000 Sobic003G015400--Sobic009G062000 Sobic001G038300 Sobic001G038300 Sobic001G107100--Sobic001G038300 Sobic003G250700 Sobic003G250700 Sobic001G107100--Sobic003G250700 Sobic002G396400 Sobic002G396400 Sobic001G107100--Sobic002G396400 Sobic001G107200 Sobic001G107200 Sobic001G107100--Sobic001G107200 Sobic002G333800 Sobic002G333800 Sobic001G107100--Sobic002G333800 Sobic002G252000 Sobic002G252000 Sobic001G107100--Sobic002G252000 Sobic006G278100 Sobic006G278100 Sobic001G107100--Sobic006G278100 Sobic001G156500 Sobic001G156500 Sobic001G107100--Sobic001G156500 Sobic007G090436 Sobic007G090436 Sobic001G107100--Sobic007G090436 Sobic001G202400--Sobic003G015400 Sobic001G202400--Sobic007G034400 Sobic008G103900 Sobic008G103900 Sobic001G202400--Sobic008G103900 Sobic001G543300 Sobic001G543300 Sobic001G202400--Sobic001G543300 Sobic001G081400 Sobic001G081400 Sobic001G202400--Sobic001G081400 Sobic009G207100 Sobic009G207100 Sobic001G202400--Sobic009G207100 Sobic001G202400--Sobic002G007100 Sobic003G182400 Sobic003G182400 Sobic001G202400--Sobic003G182400 Sobic009G168000 Sobic009G168000 Sobic001G202400--Sobic009G168000 Sobic006G171200--Sobic010G044500 Sobic006G171200--Sobic003G250700 Sobic006G171200--Sobic002G233500 Sobic007G212900 Sobic007G212900 Sobic006G171200--Sobic007G212900 Sobic004G099100 Sobic004G099100 Sobic006G171200--Sobic004G099100 Sobic006G171200--Sobic001G107100 Sobic001G505100 Sobic001G505100 Sobic006G171200--Sobic001G505100 Sobic010G080800 Sobic010G080800 Sobic006G171200--Sobic010G080800 Sobic003G427700 Sobic003G427700 Sobic006G171200--Sobic003G427700 Sobic004G298500--Sobic007G090436 Sobic001G069800 Sobic001G069800 Sobic004G298500--Sobic001G069800 Sobic001G140400 Sobic001G140400 Sobic004G298500--Sobic001G140400 Sobic003G151300 Sobic003G151300 Sobic004G298500--Sobic003G151300 Sobic007G147800 Sobic007G147800 Sobic004G298500--Sobic007G147800 Sobic010G003700 Sobic010G003700 Sobic004G298500--Sobic010G003700 Sobic004G298500--Sobic003G250700 Sobic002G226300 Sobic002G226300 Sobic004G298500--Sobic002G226300 Sobic001G131100 Sobic001G131100 Sobic004G298500--Sobic001G131100 Sobic002G233500--Sobic002G396400 Sobic002G233500--Sobic001G038300 Sobic001G475500 Sobic001G475500 Sobic002G233500--Sobic001G475500 Sobic005G004700 Sobic005G004700 Sobic002G233500--Sobic005G004700 Sobic001G434300 Sobic001G434300 Sobic002G233500--Sobic001G434300 Sobic002G233500--Sobic001G107100 Sobic002G173200 Sobic002G173200 Sobic002G233500--Sobic002G173200 Sobic003G117500 Sobic003G117500 Sobic002G233500--Sobic003G117500 Sobic001G112100 Sobic001G112100 Sobic002G233500--Sobic001G112100 Sobic005G164700 Sobic005G164700 Sobic003G181600--Sobic005G164700 Sobic003G181600--Sobic002G007100 Sobic009G117000 Sobic009G117000 Sobic003G181600--Sobic009G117000 Sobic003G181600--Sobic010G029400 Sobic003G343900 Sobic003G343900 Sobic003G181600--Sobic003G343900 Sobic008G103700 Sobic008G103700 Sobic003G181600--Sobic008G103700 Sobic009G114400 Sobic009G114400 Sobic003G181600--Sobic009G114400 Sobic006G156000 Sobic006G156000 Sobic003G181600--Sobic006G156000 Sobic003G181600--Sobic008G058300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.