Gene annotation
Transcriptome id Sobic.010G229000.1
Synonym Sb10g027220, auxin response factor, ARF6, SbARF23
Functional annotation "domain confirmed by Pfam database, expressed in leaf and root" (PubMedID : 20499123)
auxin response factor, putative, expressed
UniProt C5Z7U5
Pfam PF02309 PF02362 PF06507
Panther DB PTHR31384 PTHR31384:SF22
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003677DNA binding GO:0009725response to hormone


Orthologs (automatic annotation)
TAIR AT1G30330 : auxin response factor 6
RAP-DB (Rice) LOC_Os06g46410.1 : auxin response factor, putative, expressed
MaizeGDB (Corn) Zm00025a004682 , Zm00025a041909 , Zm00025a018041 , Zm00025a034816
Brachypodium KQJ85792 , KQK17112 , PNT62115
Barley HORVU6Hr1G026730.28 , HORVU6Hr1G026730.21 , HORVU6Hr1G026730.20 , HORVU6Hr1G026730.23 , HORVU6Hr1G026730.22 , HORVU6Hr1G026730.25 , HORVU6Hr1G026730.24 , HORVU6Hr1G026730.27 , HORVU6Hr1G026730.26 , HORVU5Hr1G009650.30 , HORVU6Hr1G041500.2 , HORVU6Hr1G041500.3 , HORVU6Hr1G026730.30 , HORVU5Hr1G009650.37 , HORVU5Hr1G009650.36 , HORVU5Hr1G009650.35 , HORVU5Hr1G009650.34 , HORVU5Hr1G009650.33 , HORVU5Hr1G009650.32 , HORVU5Hr1G009650.31 , HORVU6Hr1G026730.31 , HORVU7Hr1G106280.6 , HORVU7Hr1G106280.7 , HORVU7Hr1G106280.4 , HORVU7Hr1G106280.5 , HORVU7Hr1G106280.2 , HORVU7Hr1G106280.3 , HORVU7Hr1G106280.1 , HORVU7Hr1G106280.8 , HORVU7Hr1G106280.9 , HORVU5Hr1G009650.9 , HORVU5Hr1G009650.8 , HORVU5Hr1G009650.5 , HORVU5Hr1G009650.4 , HORVU5Hr1G009650.7 , HORVU5Hr1G009650.6 , HORVU5Hr1G009650.1 , HORVU5Hr1G009650.3 , HORVU5Hr1G009650.2 , HORVU6Hr1G026730.8 , HORVU6Hr1G026730.9 , HORVU6Hr1G026730.6 , HORVU6Hr1G026730.7 , HORVU6Hr1G026730.4 , HORVU6Hr1G026730.5 , HORVU6Hr1G026730.2 , HORVU6Hr1G026730.3 , HORVU6Hr1G026730.1 , HORVU2Hr1G121110.28 , HORVU2Hr1G121110.27 , HORVU2Hr1G121110.26 , HORVU2Hr1G121110.21 , HORVU5Hr1G009650.24 , HORVU5Hr1G009650.25 , HORVU5Hr1G009650.26 , HORVU5Hr1G009650.27 , HORVU5Hr1G009650.20 , HORVU5Hr1G009650.21 , HORVU5Hr1G009650.22 , HORVU5Hr1G009650.23 , HORVU5Hr1G009650.28 , HORVU5Hr1G009650.29 , HORVU5Hr1G009650.11 , HORVU6Hr1G026730.14 , HORVU6Hr1G026730.15 , HORVU6Hr1G026730.16 , HORVU6Hr1G026730.17 , HORVU6Hr1G026730.10 , HORVU6Hr1G026730.11 , HORVU6Hr1G026730.12 , HORVU6Hr1G026730.13 , HORVU6Hr1G026730.18 , HORVU6Hr1G026730.19 , HORVU7Hr1G106280.18 , HORVU7Hr1G106280.14 , HORVU7Hr1G106280.15 , HORVU7Hr1G106280.16 , HORVU7Hr1G106280.17 , HORVU7Hr1G106280.10 , HORVU7Hr1G106280.12 , HORVU7Hr1G106280.13 , HORVU2Hr1G121110.34 , HORVU2Hr1G121110.35 , HORVU2Hr1G121110.36 , HORVU2Hr1G121110.37 , HORVU2Hr1G121110.30 , HORVU2Hr1G121110.31 , HORVU2Hr1G121110.32 , HORVU2Hr1G121110.33 , HORVU5Hr1G009650.19 , HORVU5Hr1G009650.18 , HORVU5Hr1G009650.10 , HORVU5Hr1G009650.13 , HORVU5Hr1G009650.12 , HORVU5Hr1G009650.15 , HORVU5Hr1G009650.14 , HORVU5Hr1G009650.17 , HORVU5Hr1G009650.16
Wheat TraesCS5D02G045700 , TraesCS5D02G045700 , TraesCS5D02G045700 , TraesCS6B02G167100 , TraesCS6B02G167100 , TraesCS7A02G461700 , TraesCS2A02G547800 , TraesCS7D02G449900 , TraesCS5A02G038300 , TraesCS5A02G038300 , TraesCS5A02G038300 , TraesCS6A02G138600 , TraesCS6A02G138600 , TraesCS6D02G127600 , TraesCS6D02G127600 , TraesCS6D02G127600 , TraesCS5B02G039800 , TraesCS2B02G578500 , TraesCS7B02G363100 , TraesCS7B02G363100 , TraesCS7A02G461700 , TraesCS7A02G461700 , TraesCS7A02G461700 , TraesCS6A02G138600 , TraesCS6A02G138600 , TraesCS6A02G138600 , TraesCS6A02G138600 , TraesCS7D02G449900 , TraesCS7D02G449900 , TraesCS2D02G548900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G000800 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
2 Sobic.003G323900 - -
3 Sobic.009G013100 rp3 protein, putative, expressed -
4 Sobic.010G139301 - -
5 Sobic.006G068400 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@B-block binding subunit of TFIIIC("PubMedID : 26759170,PubMedID : 24597475")@seed storage 2S albumin superfamily("PubMedID : 26759170,PubMedID : 24597475")@transcription factor-related, putative, expressed K15199: general transcription factor 3C polypeptide 1
6 Sobic.004G054200 avr9/Cf-9 rapidly elicited protein 137, putative, expressed -
7 Sobic.004G227500 WD-40 repeat family protein, putative, expressed -
8 Sobic.002G316500 GRAS family transcription factor domain containing protein, expressed -
9 Sobic.002G056100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Leucine Rich Repeat family protein, expressed -
10 Sobic.001G305400 metallothionein family protein, expressed -
11 Sobic.004G088400 GTPase-activating protein, putative, expressed -
12 Sobic.003G432900 RNA recognition motif containing protein, putative, expressed -
13 Sobic.004G005400 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K12854: SNRNP200, pre-mRNA-splicing helicase BRR2
14 Sobic.002G049000 frigida, putative, expressed -
15 Sobic.005G051300 - -
16 Sobic.005G139800 Brix domain containing protein, putative, expressed -
17 Sobic.003G346000 IQ calmodulin-binding motif domain containing protein, expressed -
18 Sobic.003G086700 expressed protein -
19 Sobic.009G209800 OsFBX49 - F-box domain containing protein, expressed -
20 Sobic.010G033700 - -


Gene co-expression network
sample Sobic010G229000 Sobic010G229000 Sobic008G000800 Sobic008G000800 Sobic010G229000--Sobic008G000800 Sobic003G323900 Sobic003G323900 Sobic010G229000--Sobic003G323900 Sobic009G013100 Sobic009G013100 Sobic010G229000--Sobic009G013100 Sobic010G139301 Sobic010G139301 Sobic010G229000--Sobic010G139301 Sobic006G068400 Sobic006G068400 Sobic010G229000--Sobic006G068400 Sobic004G054200 Sobic004G054200 Sobic010G229000--Sobic004G054200 Sobic004G227500 Sobic004G227500 Sobic010G229000--Sobic004G227500 Sobic002G316500 Sobic002G316500 Sobic010G229000--Sobic002G316500 Sobic002G056100 Sobic002G056100 Sobic010G229000--Sobic002G056100 Sobic008G000800--Sobic010G229000 Sobic004G053300 Sobic004G053300 Sobic008G000800--Sobic004G053300 Sobic008G000800--Sobic010G139301 Sobic008G000800--Sobic006G068400 Sobic003G432900 Sobic003G432900 Sobic008G000800--Sobic003G432900 Sobic008G000800--Sobic009G013100 Sobic008G000800--Sobic004G227500 Sobic001G305400 Sobic001G305400 Sobic008G000800--Sobic001G305400 Sobic003G277900 Sobic003G277900 Sobic008G000800--Sobic003G277900 Sobic003G323900--Sobic010G139301 Sobic003G323900--Sobic002G056100 Sobic009G209800 Sobic009G209800 Sobic003G323900--Sobic009G209800 Sobic008G049701 Sobic008G049701 Sobic003G323900--Sobic008G049701 Sobic005G139800 Sobic005G139800 Sobic003G323900--Sobic005G139800 Sobic001G240400 Sobic001G240400 Sobic003G323900--Sobic001G240400 Sobic008G042250 Sobic008G042250 Sobic003G323900--Sobic008G042250 Sobic005G117801 Sobic005G117801 Sobic003G323900--Sobic005G117801 Sobic001G287301 Sobic001G287301 Sobic003G323900--Sobic001G287301 Sobic009G013100--Sobic002G316500 Sobic005G099150 Sobic005G099150 Sobic009G013100--Sobic005G099150 Sobic009G013100--Sobic010G139301 Sobic009G013100--Sobic008G000800 Sobic002G182300 Sobic002G182300 Sobic009G013100--Sobic002G182300 Sobic009G013100--Sobic010G229000 Sobic009G013100--Sobic006G068400 Sobic009G013100--Sobic004G227500 Sobic009G013100--Sobic003G323900 Sobic007G089600 Sobic007G089600 Sobic010G139301--Sobic007G089600 Sobic010G139301--Sobic006G068400 Sobic007G142050 Sobic007G142050 Sobic010G139301--Sobic007G142050 Sobic004G169501 Sobic004G169501 Sobic010G139301--Sobic004G169501 Sobic010G139301--Sobic003G323900 Sobic002G073300 Sobic002G073300 Sobic010G139301--Sobic002G073300 Sobic010G139301--Sobic002G182300 Sobic010G139301--Sobic005G099150 Sobic008G068800 Sobic008G068800 Sobic010G139301--Sobic008G068800 Sobic006G068400--Sobic002G056100 Sobic006G068400--Sobic005G139800 Sobic006G068400--Sobic009G209800 Sobic006G068400--Sobic010G139301 Sobic006G068400--Sobic008G049701 Sobic006G068400--Sobic001G305400 Sobic006G068400--Sobic001G240400 Sobic005G221425 Sobic005G221425 Sobic006G068400--Sobic005G221425 Sobic008G079100 Sobic008G079100 Sobic006G068400--Sobic008G079100 Sobic004G054200--Sobic008G000800 Sobic004G054200--Sobic010G229000 Sobic004G054200--Sobic003G432900 Sobic004G054200--Sobic004G053300 Sobic008G086200 Sobic008G086200 Sobic004G054200--Sobic008G086200 Sobic004G054200--Sobic003G277900 Sobic003G445900 Sobic003G445900 Sobic004G054200--Sobic003G445900 Sobic003G347300 Sobic003G347300 Sobic004G054200--Sobic003G347300 Sobic001G537300 Sobic001G537300 Sobic004G054200--Sobic001G537300 Sobic006G022500 Sobic006G022500 Sobic004G227500--Sobic006G022500 Sobic004G227500--Sobic002G316500 Sobic010G046400 Sobic010G046400 Sobic004G227500--Sobic010G046400 Sobic001G494100 Sobic001G494100 Sobic004G227500--Sobic001G494100 Sobic004G135500 Sobic004G135500 Sobic004G227500--Sobic004G135500 Sobic010G173900 Sobic010G173900 Sobic004G227500--Sobic010G173900 Sobic001G315400 Sobic001G315400 Sobic004G227500--Sobic001G315400 Sobic001G367100 Sobic001G367100 Sobic004G227500--Sobic001G367100 Sobic002G334600 Sobic002G334600 Sobic004G227500--Sobic002G334600 Sobic002G316500--Sobic004G227500 Sobic002G316500--Sobic009G013100 Sobic002G316500--Sobic010G229000 Sobic008G099500 Sobic008G099500 Sobic002G316500--Sobic008G099500 Sobic005G127300 Sobic005G127300 Sobic002G316500--Sobic005G127300 Sobic002G316500--Sobic010G046400 Sobic002G316500--Sobic008G000800 Sobic007G195400 Sobic007G195400 Sobic002G316500--Sobic007G195400 Sobic007G130300 Sobic007G130300 Sobic002G316500--Sobic007G130300 Sobic002G056100--Sobic009G209800 Sobic002G056100--Sobic001G240400 Sobic002G056100--Sobic008G049701 Sobic001G253100 Sobic001G253100 Sobic002G056100--Sobic001G253100 Sobic002G056100--Sobic005G117801 Sobic002G056100--Sobic001G305400 Sobic002G056100--Sobic008G042250 Sobic002G056100--Sobic005G221425 Sobic002G221200 Sobic002G221200 Sobic002G056100--Sobic002G221200
Octagon: transcription factors


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