Gene annotation
Transcriptome id Sobic.003G432900.1
Synonym Sb03g046430
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5XIJ7
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF421
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G33470 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os01g72834.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a025912
Brachypodium KQK18930
Barley -
Wheat TraesCS3B02G419200 , TraesCS3B02G419200 , TraesCS3D02G380100 , TraesCS3D02G380100 , TraesCS3A02G389600 , TraesCS3A02G389600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G246400 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
2 Sobic.003G374500 pentatricopeptide repeat domain containing protein, putative, expressed -
3 Sobic.008G000800 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
4 Sobic.004G054200 avr9/Cf-9 rapidly elicited protein 137, putative, expressed -
5 Sobic.003G445900 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed -
6 Sobic.010G229000 "domain confirmed by Pfam database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor, putative, expressed -
7 Sobic.001G278600 - -
8 Sobic.008G065400 - -
9 Sobic.010G101700 - -
10 Sobic.005G019200 rp3 protein, putative, expressed -
11 Sobic.001G262900 hhH-GPD superfamily base excision DNA repair protein, putative, expressed K10801: methyl-CpG-binding domain protein 4
12 Sobic.007G144200 - -
13 Sobic.001G518400 EF hand family protein, putative, expressed -
14 Sobic.010G056000 GAGA-binding protein, putative, expressed -
15 Sobic.010G017800 LMBR1 integral membrane protein, putative, expressed K14617: LMBR1 domain-containing protein 1
16 Sobic.002G056100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Leucine Rich Repeat family protein, expressed -
17 Sobic.010G139301 - -
18 Sobic.003G366850 - -
19 Sobic.003G060300 endoplasmic oxidoreductin-1 precursor, putative, expressed K10950: ERO1-like protein alpha
20 Sobic.006G028250 - -


Gene co-expression network
sample Sobic003G432900 Sobic003G432900 Sobic004G246400 Sobic004G246400 Sobic003G432900--Sobic004G246400 Sobic003G374500 Sobic003G374500 Sobic003G432900--Sobic003G374500 Sobic008G000800 Sobic008G000800 Sobic003G432900--Sobic008G000800 Sobic004G054200 Sobic004G054200 Sobic003G432900--Sobic004G054200 Sobic003G445900 Sobic003G445900 Sobic003G432900--Sobic003G445900 Sobic010G229000 Sobic010G229000 Sobic003G432900--Sobic010G229000 Sobic001G278600 Sobic001G278600 Sobic003G432900--Sobic001G278600 Sobic008G065400 Sobic008G065400 Sobic003G432900--Sobic008G065400 Sobic010G101700 Sobic010G101700 Sobic003G432900--Sobic010G101700 Sobic004G246400--Sobic003G432900 Sobic004G246400--Sobic008G000800 Sobic008G086200 Sobic008G086200 Sobic004G246400--Sobic008G086200 Sobic003G023400 Sobic003G023400 Sobic004G246400--Sobic003G023400 Sobic001G393401 Sobic001G393401 Sobic004G246400--Sobic001G393401 Sobic004G053300 Sobic004G053300 Sobic004G246400--Sobic004G053300 Sobic004G246400--Sobic003G445900 Sobic004G246400--Sobic010G229000 Sobic003G375000 Sobic003G375000 Sobic004G246400--Sobic003G375000 Sobic003G374500--Sobic008G065400 Sobic003G374500--Sobic001G278600 Sobic003G366850 Sobic003G366850 Sobic003G374500--Sobic003G366850 Sobic007G037301 Sobic007G037301 Sobic003G374500--Sobic007G037301 Sobic005G079700 Sobic005G079700 Sobic003G374500--Sobic005G079700 Sobic001G140200 Sobic001G140200 Sobic003G374500--Sobic001G140200 Sobic001G262900 Sobic001G262900 Sobic003G374500--Sobic001G262900 Sobic003G266700 Sobic003G266700 Sobic003G374500--Sobic003G266700 Sobic002G431200 Sobic002G431200 Sobic003G374500--Sobic002G431200 Sobic008G000800--Sobic010G229000 Sobic008G000800--Sobic004G053300 Sobic010G139301 Sobic010G139301 Sobic008G000800--Sobic010G139301 Sobic006G068400 Sobic006G068400 Sobic008G000800--Sobic006G068400 Sobic008G000800--Sobic003G432900 Sobic009G013100 Sobic009G013100 Sobic008G000800--Sobic009G013100 Sobic004G227500 Sobic004G227500 Sobic008G000800--Sobic004G227500 Sobic001G305400 Sobic001G305400 Sobic008G000800--Sobic001G305400 Sobic003G277900 Sobic003G277900 Sobic008G000800--Sobic003G277900 Sobic004G054200--Sobic008G000800 Sobic004G054200--Sobic010G229000 Sobic004G054200--Sobic003G432900 Sobic004G054200--Sobic004G053300 Sobic004G054200--Sobic008G086200 Sobic004G054200--Sobic003G277900 Sobic004G054200--Sobic003G445900 Sobic003G347300 Sobic003G347300 Sobic004G054200--Sobic003G347300 Sobic001G537300 Sobic001G537300 Sobic004G054200--Sobic001G537300 Sobic003G445900--Sobic008G000800 Sobic003G445900--Sobic004G053300 Sobic002G313500 Sobic002G313500 Sobic003G445900--Sobic002G313500 Sobic010G017800 Sobic010G017800 Sobic003G445900--Sobic010G017800 Sobic007G191100 Sobic007G191100 Sobic003G445900--Sobic007G191100 Sobic003G445900--Sobic003G432900 Sobic002G288000 Sobic002G288000 Sobic003G445900--Sobic002G288000 Sobic008G139700 Sobic008G139700 Sobic003G445900--Sobic008G139700 Sobic003G346000 Sobic003G346000 Sobic003G445900--Sobic003G346000 Sobic010G229000--Sobic008G000800 Sobic003G323900 Sobic003G323900 Sobic010G229000--Sobic003G323900 Sobic010G229000--Sobic009G013100 Sobic010G229000--Sobic010G139301 Sobic010G229000--Sobic006G068400 Sobic010G229000--Sobic004G054200 Sobic010G229000--Sobic004G227500 Sobic002G316500 Sobic002G316500 Sobic010G229000--Sobic002G316500 Sobic002G056100 Sobic002G056100 Sobic010G229000--Sobic002G056100 Sobic001G278600--Sobic008G065400 Sobic001G278600--Sobic010G101700 Sobic001G278600--Sobic003G266700 Sobic001G278600--Sobic003G374500 Sobic001G278600--Sobic003G366850 Sobic009G159300 Sobic009G159300 Sobic001G278600--Sobic009G159300 Sobic004G121000 Sobic004G121000 Sobic001G278600--Sobic004G121000 Sobic003G351150 Sobic003G351150 Sobic001G278600--Sobic003G351150 Sobic002G171400 Sobic002G171400 Sobic001G278600--Sobic002G171400 Sobic008G065400--Sobic001G278600 Sobic008G065400--Sobic002G431200 Sobic008G065400--Sobic003G366850 Sobic008G065400--Sobic003G374500 Sobic008G065400--Sobic005G079700 Sobic008G065400--Sobic003G266700 Sobic008G106400 Sobic008G106400 Sobic008G065400--Sobic008G106400 Sobic008G065400--Sobic002G171400 Sobic003G429500 Sobic003G429500 Sobic008G065400--Sobic003G429500 Sobic001G184500 Sobic001G184500 Sobic010G101700--Sobic001G184500 Sobic010G101700--Sobic001G278600 Sobic010G101700--Sobic003G351150 Sobic009G157500 Sobic009G157500 Sobic010G101700--Sobic009G157500 Sobic010G101700--Sobic003G266700 Sobic010G101700--Sobic008G065400 Sobic002G079801 Sobic002G079801 Sobic010G101700--Sobic002G079801 Sobic002G224450 Sobic002G224450 Sobic010G101700--Sobic002G224450 Sobic007G005000 Sobic007G005000 Sobic010G101700--Sobic007G005000
Octagon: transcription factors


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