Gene annotation
Transcriptome id Sobic.004G246400.1
Synonym RDR1, ATRDRP1, Sb04g028630
Functional annotation RNA-dependent RNA polymerase, putative, expressed
UniProt D3GDK2 , A0A194YRJ1
Pfam PF05183
Panther DB PTHR23079 PTHR23079:SF9
NCBI CDD -
KEGG Orthology K11699; RDR, RNA-dependent RNA polymerase
Gene Ontology GO:0003968; RNA-directed 5'-3' RNA polymerase activity


Orthologs (automatic annotation)
TAIR AT1G14790 : RNA-dependent RNA polymerase 1
RAP-DB (Rice) LOC_Os02g50330.1 : RNA-dependent RNA polymerase, putative, expressed
MaizeGDB (Corn) Zm00025a021960
Brachypodium KQK02024
Barley HORVU6Hr1G074220.12 , HORVU6Hr1G074220.11 , HORVU6Hr1G074220.10 , HORVU6Hr1G074220.2 , HORVU6Hr1G074220.9 , HORVU6Hr1G074220.8 , HORVU6Hr1G074220.3 , HORVU6Hr1G074220.1 , HORVU6Hr1G074220.7 , HORVU6Hr1G074220.6 , HORVU6Hr1G074220.5 , HORVU6Hr1G074220.4
Wheat TraesCS6B02G328500 , TraesCS6B02G328500 , TraesCS6B02G328500 , TraesCS6B02G328400 , TraesCS6D02G278600 , TraesCS6A02G298900 , TraesCS6D02G278700 , TraesCS6B02G328300 , TraesCS6B02G328300 , TraesCS6A02G299000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G432900 RNA recognition motif containing protein, putative, expressed -
2 Sobic.008G000800 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
3 Sobic.008G086200 expressed protein -
4 Sobic.003G023400 SCAR-like protein 2, putative, expressed -
5 Sobic.001G393401 - -
6 Sobic.004G053300 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
7 Sobic.003G445900 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed -
8 Sobic.010G229000 "domain confirmed by Pfam database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor, putative, expressed -
9 Sobic.003G375000 RNA recognition motif containing protein, putative, expressed -
10 Sobic.004G054200 avr9/Cf-9 rapidly elicited protein 137, putative, expressed -
11 Sobic.010G139301 - -
12 Sobic.006G248300 "Lypoxygenase, probably induced by oxidative stress, up-regulated under severe drought stress"(PubMedID : 24655390)@lipoxygenase, putative, expressed K15718: linoleate 9S-lipoxygenase
13 Sobic.003G277900 "D61(Ortholog in rice:Morinaka et al., 2006(PubMedID : 31659871)@systemin receptor SR160 precursor, putative, expressed K13415: protein brassinosteroid insensitive 1
14 Sobic.001G494100 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
15 Sobic.005G159600 lymphoid organ expressed yellow head virus receptor protein, putative, expressed -
16 Sobic.002G049000 frigida, putative, expressed -
17 Sobic.007G191100 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
18 Sobic.010G017800 LMBR1 integral membrane protein, putative, expressed K14617: LMBR1 domain-containing protein 1
19 Sobic.007G144200 - -
20 Sobic.002G288000 bromodomain domain containing protein, expressed K11723: bromodomain-containing protein 7


Gene co-expression network
sample Sobic004G246400 Sobic004G246400 Sobic003G432900 Sobic003G432900 Sobic004G246400--Sobic003G432900 Sobic008G000800 Sobic008G000800 Sobic004G246400--Sobic008G000800 Sobic008G086200 Sobic008G086200 Sobic004G246400--Sobic008G086200 Sobic003G023400 Sobic003G023400 Sobic004G246400--Sobic003G023400 Sobic001G393401 Sobic001G393401 Sobic004G246400--Sobic001G393401 Sobic004G053300 Sobic004G053300 Sobic004G246400--Sobic004G053300 Sobic003G445900 Sobic003G445900 Sobic004G246400--Sobic003G445900 Sobic010G229000 Sobic010G229000 Sobic004G246400--Sobic010G229000 Sobic003G375000 Sobic003G375000 Sobic004G246400--Sobic003G375000 Sobic003G432900--Sobic004G246400 Sobic003G374500 Sobic003G374500 Sobic003G432900--Sobic003G374500 Sobic003G432900--Sobic008G000800 Sobic004G054200 Sobic004G054200 Sobic003G432900--Sobic004G054200 Sobic003G432900--Sobic003G445900 Sobic003G432900--Sobic010G229000 Sobic001G278600 Sobic001G278600 Sobic003G432900--Sobic001G278600 Sobic008G065400 Sobic008G065400 Sobic003G432900--Sobic008G065400 Sobic010G101700 Sobic010G101700 Sobic003G432900--Sobic010G101700 Sobic008G000800--Sobic010G229000 Sobic008G000800--Sobic004G053300 Sobic010G139301 Sobic010G139301 Sobic008G000800--Sobic010G139301 Sobic006G068400 Sobic006G068400 Sobic008G000800--Sobic006G068400 Sobic008G000800--Sobic003G432900 Sobic009G013100 Sobic009G013100 Sobic008G000800--Sobic009G013100 Sobic004G227500 Sobic004G227500 Sobic008G000800--Sobic004G227500 Sobic001G305400 Sobic001G305400 Sobic008G000800--Sobic001G305400 Sobic003G277900 Sobic003G277900 Sobic008G000800--Sobic003G277900 Sobic004G225700 Sobic004G225700 Sobic008G086200--Sobic004G225700 Sobic009G175200 Sobic009G175200 Sobic008G086200--Sobic009G175200 Sobic003G174900 Sobic003G174900 Sobic008G086200--Sobic003G174900 Sobic008G086200--Sobic003G375000 Sobic009G123500 Sobic009G123500 Sobic008G086200--Sobic009G123500 Sobic008G190500 Sobic008G190500 Sobic008G086200--Sobic008G190500 Sobic004G289500 Sobic004G289500 Sobic008G086200--Sobic004G289500 Sobic009G164900 Sobic009G164900 Sobic008G086200--Sobic009G164900 Sobic010G118700 Sobic010G118700 Sobic008G086200--Sobic010G118700 Sobic004G193800 Sobic004G193800 Sobic003G023400--Sobic004G193800 Sobic002G049000 Sobic002G049000 Sobic003G023400--Sobic002G049000 Sobic006G210200 Sobic006G210200 Sobic003G023400--Sobic006G210200 Sobic003G185250 Sobic003G185250 Sobic003G023400--Sobic003G185250 Sobic002G090400 Sobic002G090400 Sobic003G023400--Sobic002G090400 Sobic008G068800 Sobic008G068800 Sobic003G023400--Sobic008G068800 Sobic001G367100 Sobic001G367100 Sobic003G023400--Sobic001G367100 Sobic001G094000 Sobic001G094000 Sobic003G023400--Sobic001G094000 Sobic003G163100 Sobic003G163100 Sobic003G023400--Sobic003G163100 Sobic001G393401--Sobic003G023400 Sobic001G384700 Sobic001G384700 Sobic001G393401--Sobic001G384700 Sobic002G216600 Sobic002G216600 Sobic001G393401--Sobic002G216600 Sobic002G060450 Sobic002G060450 Sobic001G393401--Sobic002G060450 Sobic010G190400 Sobic010G190400 Sobic001G393401--Sobic010G190400 Sobic005G204100 Sobic005G204100 Sobic001G393401--Sobic005G204100 Sobic001G184400 Sobic001G184400 Sobic001G393401--Sobic001G184400 Sobic001G393401--Sobic002G049000 Sobic004G052800 Sobic004G052800 Sobic001G393401--Sobic004G052800 Sobic004G053300--Sobic003G277900 Sobic004G053300--Sobic008G000800 Sobic005G159600 Sobic005G159600 Sobic004G053300--Sobic005G159600 Sobic008G099500 Sobic008G099500 Sobic004G053300--Sobic008G099500 Sobic001G494100 Sobic001G494100 Sobic004G053300--Sobic001G494100 Sobic004G053300--Sobic003G445900 Sobic004G053300--Sobic004G227500 Sobic004G053300--Sobic004G054200 Sobic004G053300--Sobic008G086200 Sobic003G445900--Sobic008G000800 Sobic003G445900--Sobic004G053300 Sobic002G313500 Sobic002G313500 Sobic003G445900--Sobic002G313500 Sobic010G017800 Sobic010G017800 Sobic003G445900--Sobic010G017800 Sobic007G191100 Sobic007G191100 Sobic003G445900--Sobic007G191100 Sobic003G445900--Sobic003G432900 Sobic002G288000 Sobic002G288000 Sobic003G445900--Sobic002G288000 Sobic008G139700 Sobic008G139700 Sobic003G445900--Sobic008G139700 Sobic003G346000 Sobic003G346000 Sobic003G445900--Sobic003G346000 Sobic010G229000--Sobic008G000800 Sobic003G323900 Sobic003G323900 Sobic010G229000--Sobic003G323900 Sobic010G229000--Sobic009G013100 Sobic010G229000--Sobic010G139301 Sobic010G229000--Sobic006G068400 Sobic010G229000--Sobic004G054200 Sobic010G229000--Sobic004G227500 Sobic002G316500 Sobic002G316500 Sobic010G229000--Sobic002G316500 Sobic002G056100 Sobic002G056100 Sobic010G229000--Sobic002G056100 Sobic003G375000--Sobic008G086200 Sobic003G375000--Sobic003G174900 Sobic003G375000--Sobic009G175200 Sobic007G187400 Sobic007G187400 Sobic003G375000--Sobic007G187400 Sobic003G375000--Sobic001G494100 Sobic006G248300 Sobic006G248300 Sobic003G375000--Sobic006G248300 Sobic003G375000--Sobic004G225700 Sobic003G375000--Sobic003G277900 Sobic003G375000--Sobic005G204100
Octagon: transcription factors


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