Gene annotation
Transcriptome id Sobic.003G086700.1
Synonym Sb03g007280
Functional annotation expressed protein
UniProt A0A1B6Q225
Pfam PF07891
Panther DB PTHR10759 PTHR10759:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G73850 : Protein of unknown function (DUF1666)
RAP-DB (Rice) LOC_Os01g03870.1 : expressed protein
MaizeGDB (Corn) Zm00025a035548 , Zm00025a023632
Brachypodium KQK02525
Barley HORVU3Hr1G003760.20 , HORVU3Hr1G003760.21 , HORVU3Hr1G003760.22 , HORVU3Hr1G003760.23 , HORVU3Hr1G003760.24 , HORVU3Hr1G003760.19 , HORVU3Hr1G003760.18 , HORVU3Hr1G003760.15 , HORVU3Hr1G003760.14 , HORVU3Hr1G003760.17 , HORVU3Hr1G003760.16 , HORVU3Hr1G003760.11 , HORVU3Hr1G003760.10 , HORVU3Hr1G003760.13 , HORVU3Hr1G003760.12 , HORVU3Hr1G003760.9 , HORVU3Hr1G003760.8 , HORVU3Hr1G003760.1 , HORVU3Hr1G003760.3 , HORVU3Hr1G003760.2 , HORVU3Hr1G003760.5 , HORVU3Hr1G003760.4 , HORVU3Hr1G003760.7 , HORVU3Hr1G003760.6
Wheat TraesCS3A02G043100 , TraesCS3B02G040300 , TraesCS3D02G037500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G049000 frigida, putative, expressed -
2 Sobic.002G061400 OsFBX237 - F-box domain containing protein, expressed -
3 Sobic.003G380500 expressed protein -
4 Sobic.004G143700 protein phosphatase 2C, putative, expressed -
5 Sobic.007G008800 VHS and GAT domain containing protein, expressed -
6 Sobic.003G128600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNAJ heat shock N-terminal domain-containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
7 Sobic.002G297800 growth regulating factor protein, putative, expressed -
8 Sobic.010G123500 B-box (BBX) protein(PubMedID : 30626335)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed -
9 Sobic.003G346000 IQ calmodulin-binding motif domain containing protein, expressed -
10 Sobic.004G088400 GTPase-activating protein, putative, expressed -
11 Sobic.001G184400 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR55 - Auxin-responsive SAUR gene family member, expressed -
12 Sobic.003G323900 - -
13 Sobic.007G130300 ES43 protein, putative, expressed -
14 Sobic.004G169501 - -
15 Sobic.003G026300 BES1/BZR1 homolog protein, putative, expressed -
16 Sobic.009G164900 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
17 Sobic.002G177400 expressed protein -
18 Sobic.002G090400 polygalacturonase, putative, expressed -
19 Sobic.010G139301 - -
20 Sobic.010G229000 "domain confirmed by Pfam database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor, putative, expressed -


Gene co-expression network
sample Sobic003G086700 Sobic003G086700 Sobic002G049000 Sobic002G049000 Sobic003G086700--Sobic002G049000 Sobic002G061400 Sobic002G061400 Sobic003G086700--Sobic002G061400 Sobic003G380500 Sobic003G380500 Sobic003G086700--Sobic003G380500 Sobic004G143700 Sobic004G143700 Sobic003G086700--Sobic004G143700 Sobic007G008800 Sobic007G008800 Sobic003G086700--Sobic007G008800 Sobic003G128600 Sobic003G128600 Sobic003G086700--Sobic003G128600 Sobic002G297800 Sobic002G297800 Sobic003G086700--Sobic002G297800 Sobic010G123500 Sobic010G123500 Sobic003G086700--Sobic010G123500 Sobic003G346000 Sobic003G346000 Sobic003G086700--Sobic003G346000 Sobic002G049000--Sobic003G346000 Sobic002G049000--Sobic002G297800 Sobic002G090400 Sobic002G090400 Sobic002G049000--Sobic002G090400 Sobic008G068800 Sobic008G068800 Sobic002G049000--Sobic008G068800 Sobic007G011400 Sobic007G011400 Sobic002G049000--Sobic007G011400 Sobic002G049000--Sobic002G061400 Sobic001G094000 Sobic001G094000 Sobic002G049000--Sobic001G094000 Sobic008G034600 Sobic008G034600 Sobic002G049000--Sobic008G034600 Sobic001G394400 Sobic001G394400 Sobic002G049000--Sobic001G394400 Sobic008G129700 Sobic008G129700 Sobic002G061400--Sobic008G129700 Sobic003G336800 Sobic003G336800 Sobic002G061400--Sobic003G336800 Sobic002G421700 Sobic002G421700 Sobic002G061400--Sobic002G421700 Sobic010G199800 Sobic010G199800 Sobic002G061400--Sobic010G199800 Sobic002G061400--Sobic008G034600 Sobic008G116500 Sobic008G116500 Sobic002G061400--Sobic008G116500 Sobic002G061400--Sobic002G297800 Sobic002G061400--Sobic002G049000 Sobic008G117200 Sobic008G117200 Sobic002G061400--Sobic008G117200 Sobic006G262600 Sobic006G262600 Sobic003G380500--Sobic006G262600 Sobic002G007200 Sobic002G007200 Sobic003G380500--Sobic002G007200 Sobic001G179000 Sobic001G179000 Sobic003G380500--Sobic001G179000 Sobic002G221700 Sobic002G221700 Sobic003G380500--Sobic002G221700 Sobic007G191100 Sobic007G191100 Sobic003G380500--Sobic007G191100 Sobic009G164900 Sobic009G164900 Sobic003G380500--Sobic009G164900 Sobic004G250700 Sobic004G250700 Sobic003G380500--Sobic004G250700 Sobic007G195400 Sobic007G195400 Sobic003G380500--Sobic007G195400 Sobic003G380500--Sobic007G008800 Sobic007G073400 Sobic007G073400 Sobic004G143700--Sobic007G073400 Sobic007G023700 Sobic007G023700 Sobic004G143700--Sobic007G023700 Sobic004G212800 Sobic004G212800 Sobic004G143700--Sobic004G212800 Sobic002G283300 Sobic002G283300 Sobic004G143700--Sobic002G283300 Sobic010G248200 Sobic010G248200 Sobic004G143700--Sobic010G248200 Sobic001G024200 Sobic001G024200 Sobic004G143700--Sobic001G024200 Sobic003G093600 Sobic003G093600 Sobic004G143700--Sobic003G093600 Sobic001G439500 Sobic001G439500 Sobic004G143700--Sobic001G439500 Sobic001G543900 Sobic001G543900 Sobic004G143700--Sobic001G543900 Sobic003G026300 Sobic003G026300 Sobic007G008800--Sobic003G026300 Sobic004G088400 Sobic004G088400 Sobic007G008800--Sobic004G088400 SobicK009900 SobicK009900 Sobic007G008800--SobicK009900 Sobic002G177400 Sobic002G177400 Sobic007G008800--Sobic002G177400 Sobic004G076732 Sobic004G076732 Sobic007G008800--Sobic004G076732 Sobic002G410200 Sobic002G410200 Sobic007G008800--Sobic002G410200 Sobic007G008800--Sobic001G024200 Sobic005G139800 Sobic005G139800 Sobic007G008800--Sobic005G139800 Sobic001G271801 Sobic001G271801 Sobic007G008800--Sobic001G271801 Sobic009G059600 Sobic009G059600 Sobic003G128600--Sobic009G059600 Sobic004G169501 Sobic004G169501 Sobic003G128600--Sobic004G169501 Sobic003G015000 Sobic003G015000 Sobic003G128600--Sobic003G015000 Sobic002G140800 Sobic002G140800 Sobic003G128600--Sobic002G140800 Sobic004G286900 Sobic004G286900 Sobic003G128600--Sobic004G286900 Sobic009G257300 Sobic009G257300 Sobic003G128600--Sobic009G257300 Sobic004G164600 Sobic004G164600 Sobic003G128600--Sobic004G164600 Sobic003G128600--Sobic008G068800 Sobic003G128600--Sobic008G117200 Sobic002G297800--Sobic002G049000 Sobic003G204000 Sobic003G204000 Sobic002G297800--Sobic003G204000 Sobic002G297800--Sobic002G061400 Sobic002G297800--Sobic008G068800 Sobic009G231300 Sobic009G231300 Sobic002G297800--Sobic009G231300 Sobic002G297800--Sobic009G257300 Sobic002G297800--Sobic004G212800 Sobic002G313300 Sobic002G313300 Sobic002G297800--Sobic002G313300 Sobic002G297800--Sobic009G059600 Sobic010G123500--Sobic004G169501 Sobic010G123500--Sobic003G128600 Sobic001G267233 Sobic001G267233 Sobic010G123500--Sobic001G267233 Sobic010G123500--Sobic002G221700 Sobic008G091900 Sobic008G091900 Sobic010G123500--Sobic008G091900 Sobic010G123500--Sobic002G177400 Sobic004G289500 Sobic004G289500 Sobic010G123500--Sobic004G289500 Sobic005G117801 Sobic005G117801 Sobic010G123500--Sobic005G117801 Sobic001G253100 Sobic001G253100 Sobic010G123500--Sobic001G253100 Sobic003G346000--Sobic002G049000 Sobic003G346000--Sobic007G011400 Sobic003G346000--Sobic008G034600 Sobic003G346000--Sobic002G313300 Sobic002G151600 Sobic002G151600 Sobic003G346000--Sobic002G151600 Sobic003G346000--Sobic004G088400 Sobic003G346000--Sobic007G008800 Sobic003G346000--Sobic002G177400 Sobic004G005400 Sobic004G005400 Sobic003G346000--Sobic004G005400
Octagon: transcription factors


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