Gene annotation
Transcriptome id Sobic.001G537300.2,Sobic.001G537300.1
Synonym IFL, REV-2, IFL1, Sb01g050000, REV
Functional annotation Class III HD ZIP family protein (PubMedID : 23915383)
START domain containing protein, expressed
UniProt C5WMP7 , A0A1Z5SCC9
Pfam PF00046 PF01852 PF08670
Panther DB PTHR24326 PTHR24326:SF279
NCBI CDD KOG0483; Transcription factor HEX, contains HOX and HALZ domains
KEGG Orthology K09338; homeobox-leucine zipper protein
Gene Ontology GO:0003677; DNA binding GO:0008289lipid binding


Orthologs (automatic annotation)
TAIR AT5G60690 : Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
RAP-DB (Rice) LOC_Os03g01890.1 : START domain containing protein, expressed
MaizeGDB (Corn) Zm00025a000157 , Zm00025a058172 , Zm00025a006577 , Zm00025a007298 , Zm00025a025364 , Zm00025a053557 , Zm00025a035846 , Zm00025a017264
Brachypodium KQK03195 , KQK14011 , KQJ97131 , KQJ85820 , PNT67561
Barley HORVU4Hr1G090030.32 , HORVU4Hr1G090030.30 , HORVU4Hr1G090030.31 , HORVU5Hr1G061410.20 , HORVU5Hr1G061410.21 , HORVU5Hr1G061410.22 , HORVU5Hr1G061410.23 , HORVU5Hr1G061410.24 , HORVU5Hr1G061410.25 , HORVU5Hr1G061410.26 , HORVU5Hr1G061410.27 , HORVU5Hr1G061410.28 , HORVU5Hr1G061410.29 , HORVU1Hr1G041790.18 , HORVU1Hr1G041790.12 , HORVU1Hr1G041790.13 , HORVU1Hr1G041790.10 , HORVU1Hr1G041790.11 , HORVU1Hr1G041790.16 , HORVU1Hr1G041790.17 , HORVU1Hr1G041790.14 , HORVU1Hr1G041790.15 , HORVU5Hr1G010650.1 , HORVU4Hr1G090030.6 , HORVU4Hr1G090030.7 , HORVU4Hr1G090030.4 , HORVU4Hr1G090030.5 , HORVU4Hr1G090030.2 , HORVU4Hr1G090030.3 , HORVU4Hr1G090030.1 , HORVU4Hr1G090030.8 , HORVU4Hr1G090030.9 , HORVU3Hr1G026990.31 , HORVU3Hr1G026990.30 , HORVU3Hr1G026990.33 , HORVU3Hr1G026990.32 , HORVU3Hr1G026990.34 , HORVU3Hr1G026990.37 , HORVU5Hr1G061410.15 , HORVU5Hr1G061410.14 , HORVU5Hr1G061410.17 , HORVU5Hr1G061410.16 , HORVU5Hr1G061410.11 , HORVU5Hr1G061410.10 , HORVU5Hr1G061410.13 , HORVU5Hr1G061410.12 , HORVU5Hr1G061410.19 , HORVU5Hr1G061410.18 , HORVU4Hr1G090030.18 , HORVU4Hr1G090030.19 , HORVU4Hr1G090030.14 , HORVU4Hr1G090030.15 , HORVU4Hr1G090030.16 , HORVU4Hr1G090030.10 , HORVU4Hr1G090030.11 , HORVU4Hr1G090030.12 , HORVU3Hr1G026990.9 , HORVU3Hr1G026990.7 , HORVU3Hr1G026990.6 , HORVU3Hr1G026990.3 , HORVU3Hr1G026990.2 , HORVU3Hr1G026990.1 , HORVU5Hr1G093150.5 , HORVU5Hr1G093150.4 , HORVU5Hr1G093150.7 , HORVU5Hr1G093150.6 , HORVU5Hr1G093150.1 , HORVU5Hr1G093150.3 , HORVU5Hr1G093150.2 , HORVU5Hr1G061410.1 , HORVU5Hr1G061410.3 , HORVU5Hr1G061410.2 , HORVU5Hr1G061410.5 , HORVU5Hr1G061410.4 , HORVU5Hr1G061410.7 , HORVU5Hr1G061410.6 , HORVU5Hr1G061410.9 , HORVU5Hr1G061410.8 , HORVU4Hr1G090030.17 , HORVU3Hr1G026990.28 , HORVU3Hr1G026990.29 , HORVU3Hr1G026990.24 , HORVU3Hr1G026990.22 , HORVU3Hr1G026990.23 , HORVU3Hr1G026990.20 , HORVU3Hr1G026990.21 , HORVU5Hr1G093150.11 , HORVU5Hr1G093150.10 , HORVU5Hr1G093150.12 , HORVU1Hr1G041790.7 , HORVU4Hr1G090030.21 , HORVU4Hr1G090030.20 , HORVU4Hr1G090030.23 , HORVU4Hr1G090030.22 , HORVU4Hr1G090030.25 , HORVU4Hr1G090030.24 , HORVU4Hr1G090030.27 , HORVU4Hr1G090030.26 , HORVU4Hr1G090030.29 , HORVU4Hr1G090030.28 , HORVU1Hr1G041790.1 , HORVU1Hr1G041790.2 , HORVU1Hr1G041790.3 , HORVU1Hr1G041790.4 , HORVU1Hr1G041790.5 , HORVU1Hr1G041790.6 , HORVU3Hr1G026990.27 , HORVU1Hr1G041790.8 , HORVU1Hr1G041790.9 , HORVU3Hr1G026990.17 , HORVU3Hr1G026990.11 , HORVU5Hr1G061410.31 , HORVU5Hr1G061410.33 , HORVU5Hr1G061410.32 , HORVU5Hr1G061410.30 , HORVU5Hr1G061410.35 , HORVU5Hr1G061410.34 , HORVU5Hr1G093150.9 , HORVU5Hr1G093150.8
Wheat TraesCS1D02G155200 , TraesCS4D02G359600 , TraesCS5B02G047200 , TraesCS5D02G385300 , TraesCS1D02G155200 , TraesCS1D02G155200 , TraesCS3B02G159100 , TraesCS3B02G159100 , TraesCS5A02G043400 , TraesCS5D02G052300 , TraesCS5B02G378000 , TraesCS4B02G385200 , TraesCS1B02G173900 , TraesCS3A02G312800 , TraesCS3A02G312800 , TraesCS1A02G157500 , TraesCS3D02G141500 , TraesCS3D02G141500 , TraesCS5A02G549700 , TraesCS5A02G549700 , TraesCS5A02G375800
Populus PNS92629 , PNS92626 , PNS92627 , PNS92628 , PNT18995 , PNT18994 , PNT18996 , PNT33396 , PNT33397 , PNT18993


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cDNA sequences
Sobic.001G537300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G450800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
2 Sobic.005G079700 expressed protein -
3 Sobic.003G361300 "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed K13946: AUX1, auxin influx carrier (AUX1 LAX family)
4 Sobic.003G399000 expressed protein -
5 Sobic.004G054200 avr9/Cf-9 rapidly elicited protein 137, putative, expressed -
6 Sobic.002G239900 expressed protein K19307: 25S rRNA (uracil2634-N3)-methyltransferase
7 Sobic.001G157400 Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed K09338: homeobox-leucine zipper protein
8 Sobic.010G033700 - -
9 Sobic.002G136800 protein kinase family protein, putative, expressed -
10 Sobic.009G121750 - -
11 Sobic.003G432900 RNA recognition motif containing protein, putative, expressed -
12 Sobic.008G000800 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
13 Sobic.005G229800 expressed protein -
14 Sobic.001G106200 Homeobox domain containing protein, expressed -
15 Sobic.003G198150 - -
16 Sobic.003G374500 pentatricopeptide repeat domain containing protein, putative, expressed -
17 Sobic.001G160200 expressed protein -
18 Sobic.008G149650 - -
19 Sobic.001G140200 Homeobox domain containing protein, expressed -
20 Sobic.001G430700 expressed protein -


Gene co-expression network
sample Sobic001G537300 Sobic001G537300 Sobic001G450800 Sobic001G450800 Sobic001G537300--Sobic001G450800 Sobic005G079700 Sobic005G079700 Sobic001G537300--Sobic005G079700 Sobic003G361300 Sobic003G361300 Sobic001G537300--Sobic003G361300 Sobic003G399000 Sobic003G399000 Sobic001G537300--Sobic003G399000 Sobic004G054200 Sobic004G054200 Sobic001G537300--Sobic004G054200 Sobic002G239900 Sobic002G239900 Sobic001G537300--Sobic002G239900 Sobic001G157400 Sobic001G157400 Sobic001G537300--Sobic001G157400 Sobic010G033700 Sobic010G033700 Sobic001G537300--Sobic010G033700 Sobic002G136800 Sobic002G136800 Sobic001G537300--Sobic002G136800 Sobic001G450800--Sobic003G361300 Sobic001G430700 Sobic001G430700 Sobic001G450800--Sobic001G430700 Sobic003G198150 Sobic003G198150 Sobic001G450800--Sobic003G198150 Sobic001G106000 Sobic001G106000 Sobic001G450800--Sobic001G106000 Sobic003G040800 Sobic003G040800 Sobic001G450800--Sobic003G040800 Sobic003G227600 Sobic003G227600 Sobic001G450800--Sobic003G227600 Sobic008G044750 Sobic008G044750 Sobic001G450800--Sobic008G044750 Sobic009G216900 Sobic009G216900 Sobic001G450800--Sobic009G216900 Sobic004G285100 Sobic004G285100 Sobic001G450800--Sobic004G285100 Sobic008G065400 Sobic008G065400 Sobic005G079700--Sobic008G065400 Sobic008G106400 Sobic008G106400 Sobic005G079700--Sobic008G106400 Sobic006G249200 Sobic006G249200 Sobic005G079700--Sobic006G249200 Sobic002G431200 Sobic002G431200 Sobic005G079700--Sobic002G431200 Sobic001G140200 Sobic001G140200 Sobic005G079700--Sobic001G140200 Sobic003G374500 Sobic003G374500 Sobic005G079700--Sobic003G374500 Sobic009G159300 Sobic009G159300 Sobic005G079700--Sobic009G159300 Sobic009G121750 Sobic009G121750 Sobic005G079700--Sobic009G121750 Sobic005G079700--Sobic008G044750 Sobic003G361300--Sobic001G450800 Sobic003G361300--Sobic001G430700 Sobic003G361300--Sobic003G198150 Sobic003G361300--Sobic008G044750 Sobic003G361300--Sobic003G227600 Sobic003G361300--Sobic003G040800 Sobic003G361300--Sobic009G216900 Sobic003G233900 Sobic003G233900 Sobic003G361300--Sobic003G233900 Sobic009G128300 Sobic009G128300 Sobic003G361300--Sobic009G128300 Sobic004G262600 Sobic004G262600 Sobic003G399000--Sobic004G262600 Sobic004G204400 Sobic004G204400 Sobic003G399000--Sobic004G204400 Sobic009G159900 Sobic009G159900 Sobic003G399000--Sobic009G159900 Sobic003G399000--Sobic001G537300 Sobic003G399000--Sobic009G121750 Sobic004G053300 Sobic004G053300 Sobic003G399000--Sobic004G053300 Sobic003G399000--Sobic003G361300 Sobic001G217300 Sobic001G217300 Sobic003G399000--Sobic001G217300 Sobic001G316900 Sobic001G316900 Sobic003G399000--Sobic001G316900 Sobic008G000800 Sobic008G000800 Sobic004G054200--Sobic008G000800 Sobic010G229000 Sobic010G229000 Sobic004G054200--Sobic010G229000 Sobic003G432900 Sobic003G432900 Sobic004G054200--Sobic003G432900 Sobic004G054200--Sobic004G053300 Sobic008G086200 Sobic008G086200 Sobic004G054200--Sobic008G086200 Sobic003G277900 Sobic003G277900 Sobic004G054200--Sobic003G277900 Sobic003G445900 Sobic003G445900 Sobic004G054200--Sobic003G445900 Sobic003G347300 Sobic003G347300 Sobic004G054200--Sobic003G347300 Sobic004G054200--Sobic001G537300 Sobic003G017200 Sobic003G017200 Sobic002G239900--Sobic003G017200 Sobic006G200200 Sobic006G200200 Sobic002G239900--Sobic006G200200 Sobic001G155300 Sobic001G155300 Sobic002G239900--Sobic001G155300 Sobic002G239900--Sobic001G157400 Sobic007G153001 Sobic007G153001 Sobic002G239900--Sobic007G153001 Sobic001G241600 Sobic001G241600 Sobic002G239900--Sobic001G241600 Sobic001G160200 Sobic001G160200 Sobic002G239900--Sobic001G160200 Sobic003G378000 Sobic003G378000 Sobic002G239900--Sobic003G378000 Sobic002G239900--Sobic001G106000 Sobic001G050800 Sobic001G050800 Sobic001G157400--Sobic001G050800 Sobic002G023900 Sobic002G023900 Sobic001G157400--Sobic002G023900 Sobic006G026400 Sobic006G026400 Sobic001G157400--Sobic006G026400 Sobic002G068800 Sobic002G068800 Sobic001G157400--Sobic002G068800 Sobic003G278700 Sobic003G278700 Sobic001G157400--Sobic003G278700 Sobic001G157400--Sobic003G227600 Sobic006G032200 Sobic006G032200 Sobic001G157400--Sobic006G032200 Sobic006G078300 Sobic006G078300 Sobic001G157400--Sobic006G078300 Sobic009G170100 Sobic009G170100 Sobic001G157400--Sobic009G170100 Sobic005G096800 Sobic005G096800 Sobic010G033700--Sobic005G096800 Sobic004G289600 Sobic004G289600 Sobic010G033700--Sobic004G289600 Sobic010G139301 Sobic010G139301 Sobic010G033700--Sobic010G139301 Sobic002G182150 Sobic002G182150 Sobic010G033700--Sobic002G182150 Sobic010G033700--Sobic005G079700 Sobic010G033700--Sobic004G204400 Sobic010G033700--Sobic008G065400 Sobic004G132100 Sobic004G132100 Sobic010G033700--Sobic004G132100 Sobic010G033700--Sobic003G374500 Sobic002G316500 Sobic002G316500 Sobic002G136800--Sobic002G316500 Sobic002G136800--Sobic008G000800 Sobic002G136800--Sobic001G537300 Sobic002G136800--Sobic010G033700 Sobic004G227500 Sobic004G227500 Sobic002G136800--Sobic004G227500 Sobic002G136800--Sobic003G399000 Sobic002G136800--Sobic005G079700 Sobic009G013100 Sobic009G013100 Sobic002G136800--Sobic009G013100 Sobic010G050700 Sobic010G050700 Sobic002G136800--Sobic010G050700
Octagon: transcription factors


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