Gene annotation
Transcriptome id Sobic.005G229800.4,Sobic.005G229800.5,Sobic.005G229800.1,Sobic.005G229800.3,Sobic.005G229800.2
Synonym
Functional annotation expressed protein
UniProt A0A1B6PUA1 , A0A1Z5RK47
Pfam PF13962 PF12796 PF13857
Panther DB PTHR24177 PTHR24177:SF20
NCBI CDD KOG4412; 26S proteasome regulatory complex, subunit PSMD10
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G03500 : Ankyrin repeat family protein
RAP-DB (Rice) LOC_Os09g15370.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium KQJ81816 , KQJ81815 , KQJ81813 , PNT60682 , PNT60681 , PNT60686 , PNT60684 , PNT60685
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G060300 endoplasmic oxidoreductin-1 precursor, putative, expressed K10950: ERO1-like protein alpha
2 Sobic.008G000800 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
3 Sobic.003G347300 TBC domain containing protein, expressed -
4 Sobic.006G068400 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@B-block binding subunit of TFIIIC("PubMedID : 26759170,PubMedID : 24597475")@seed storage 2S albumin superfamily("PubMedID : 26759170,PubMedID : 24597475")@transcription factor-related, putative, expressed K15199: general transcription factor 3C polypeptide 1
5 Sobic.001G326100 expressed protein -
6 Sobic.001G018100 "qTGW3/GL3.3/TGW3(Ortholog in rice:Hu et al., 2018/Xia et al., 2018/Ying et al., 2018 )"(PubMedID : 31659830)@CGMC_GSK.5 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta
7 Sobic.004G045566 - -
8 Sobic.001G021500 CESA5 - cellulose synthase, expressed K10999: cellulose synthase A
9 Sobic.005G204800 protein phosphatase 2C, putative, expressed -
10 Sobic.008G106600 - -
11 Sobic.008G091671 - -
12 Sobic.001G537300 Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed K09338: homeobox-leucine zipper protein
13 Sobic.006G180700 SNF2 family N-terminal domain containing protein, expressed K14439: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1
14 Sobic.004G289500 - -
15 Sobic.010G229000 "domain confirmed by Pfam database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor, putative, expressed -
16 Sobic.008G099500 - -
17 Sobic.010G139301 - -
18 Sobic.001G315400 expressed protein -
19 Sobic.010G113900 Rf1, mitochondrial precursor, putative, expressed -
20 Sobic.005G159600 lymphoid organ expressed yellow head virus receptor protein, putative, expressed -


Gene co-expression network
sample Sobic005G229800 Sobic005G229800 Sobic003G060300 Sobic003G060300 Sobic005G229800--Sobic003G060300 Sobic008G000800 Sobic008G000800 Sobic005G229800--Sobic008G000800 Sobic003G347300 Sobic003G347300 Sobic005G229800--Sobic003G347300 Sobic006G068400 Sobic006G068400 Sobic005G229800--Sobic006G068400 Sobic001G326100 Sobic001G326100 Sobic005G229800--Sobic001G326100 Sobic001G018100 Sobic001G018100 Sobic005G229800--Sobic001G018100 Sobic004G045566 Sobic004G045566 Sobic005G229800--Sobic004G045566 Sobic001G021500 Sobic001G021500 Sobic005G229800--Sobic001G021500 Sobic005G204800 Sobic005G204800 Sobic005G229800--Sobic005G204800 Sobic003G374500 Sobic003G374500 Sobic003G060300--Sobic003G374500 Sobic003G060300--Sobic005G229800 Sobic005G079700 Sobic005G079700 Sobic003G060300--Sobic005G079700 Sobic010G101700 Sobic010G101700 Sobic003G060300--Sobic010G101700 Sobic010G033700 Sobic010G033700 Sobic003G060300--Sobic010G033700 Sobic004G289600 Sobic004G289600 Sobic003G060300--Sobic004G289600 Sobic001G278600 Sobic001G278600 Sobic003G060300--Sobic001G278600 Sobic008G065400 Sobic008G065400 Sobic003G060300--Sobic008G065400 Sobic002G387200 Sobic002G387200 Sobic003G060300--Sobic002G387200 Sobic010G229000 Sobic010G229000 Sobic008G000800--Sobic010G229000 Sobic004G053300 Sobic004G053300 Sobic008G000800--Sobic004G053300 Sobic010G139301 Sobic010G139301 Sobic008G000800--Sobic010G139301 Sobic008G000800--Sobic006G068400 Sobic003G432900 Sobic003G432900 Sobic008G000800--Sobic003G432900 Sobic009G013100 Sobic009G013100 Sobic008G000800--Sobic009G013100 Sobic004G227500 Sobic004G227500 Sobic008G000800--Sobic004G227500 Sobic001G305400 Sobic001G305400 Sobic008G000800--Sobic001G305400 Sobic003G277900 Sobic003G277900 Sobic008G000800--Sobic003G277900 Sobic002G218700 Sobic002G218700 Sobic003G347300--Sobic002G218700 Sobic003G347300--Sobic001G021500 Sobic002G033700 Sobic002G033700 Sobic003G347300--Sobic002G033700 Sobic009G126000 Sobic009G126000 Sobic003G347300--Sobic009G126000 Sobic006G254500 Sobic006G254500 Sobic003G347300--Sobic006G254500 Sobic009G030300 Sobic009G030300 Sobic003G347300--Sobic009G030300 Sobic009G013700 Sobic009G013700 Sobic003G347300--Sobic009G013700 Sobic009G123500 Sobic009G123500 Sobic003G347300--Sobic009G123500 Sobic008G086200 Sobic008G086200 Sobic003G347300--Sobic008G086200 Sobic002G056100 Sobic002G056100 Sobic006G068400--Sobic002G056100 Sobic005G139800 Sobic005G139800 Sobic006G068400--Sobic005G139800 Sobic009G209800 Sobic009G209800 Sobic006G068400--Sobic009G209800 Sobic006G068400--Sobic010G139301 Sobic008G049701 Sobic008G049701 Sobic006G068400--Sobic008G049701 Sobic006G068400--Sobic001G305400 Sobic001G240400 Sobic001G240400 Sobic006G068400--Sobic001G240400 Sobic005G221425 Sobic005G221425 Sobic006G068400--Sobic005G221425 Sobic008G079100 Sobic008G079100 Sobic006G068400--Sobic008G079100 Sobic009G067551 Sobic009G067551 Sobic001G326100--Sobic009G067551 Sobic001G326100--Sobic005G204800 Sobic001G326100--Sobic005G229800 Sobic001G326100--Sobic003G060300 Sobic006G180700 Sobic006G180700 Sobic001G326100--Sobic006G180700 Sobic009G044900 Sobic009G044900 Sobic001G326100--Sobic009G044900 Sobic005G114400 Sobic005G114400 Sobic001G326100--Sobic005G114400 Sobic004G180033 Sobic004G180033 Sobic001G326100--Sobic004G180033 Sobic004G180000 Sobic004G180000 Sobic001G326100--Sobic004G180000 Sobic002G427800 Sobic002G427800 Sobic001G018100--Sobic002G427800 Sobic001G315400 Sobic001G315400 Sobic001G018100--Sobic001G315400 Sobic004G086200 Sobic004G086200 Sobic001G018100--Sobic004G086200 Sobic001G018100--Sobic006G180700 Sobic001G245900 Sobic001G245900 Sobic001G018100--Sobic001G245900 Sobic002G148400 Sobic002G148400 Sobic001G018100--Sobic002G148400 Sobic001G018100--Sobic005G114400 Sobic006G131200 Sobic006G131200 Sobic001G018100--Sobic006G131200 Sobic006G091000 Sobic006G091000 Sobic001G018100--Sobic006G091000 Sobic005G099150 Sobic005G099150 Sobic004G045566--Sobic005G099150 Sobic005G128000 Sobic005G128000 Sobic004G045566--Sobic005G128000 Sobic004G045566--Sobic006G068400 Sobic002G073300 Sobic002G073300 Sobic004G045566--Sobic002G073300 Sobic002G182300 Sobic002G182300 Sobic004G045566--Sobic002G182300 Sobic006G072900 Sobic006G072900 Sobic004G045566--Sobic006G072900 Sobic002G018100 Sobic002G018100 Sobic004G045566--Sobic002G018100 Sobic005G096800 Sobic005G096800 Sobic004G045566--Sobic005G096800 Sobic008G091671 Sobic008G091671 Sobic004G045566--Sobic008G091671 Sobic004G243400 Sobic004G243400 Sobic001G021500--Sobic004G243400 Sobic002G377300 Sobic002G377300 Sobic001G021500--Sobic002G377300 Sobic009G055900 Sobic009G055900 Sobic001G021500--Sobic009G055900 Sobic003G165800 Sobic003G165800 Sobic001G021500--Sobic003G165800 Sobic008G190500 Sobic008G190500 Sobic001G021500--Sobic008G190500 Sobic001G021500--Sobic003G347300 Sobic010G123300 Sobic010G123300 Sobic001G021500--Sobic010G123300 Sobic009G144200 Sobic009G144200 Sobic001G021500--Sobic009G144200 Sobic007G210900 Sobic007G210900 Sobic001G021500--Sobic007G210900 Sobic005G204800--Sobic001G326100 Sobic005G204800--Sobic005G229800 Sobic006G072501 Sobic006G072501 Sobic005G204800--Sobic006G072501 Sobic010G004400 Sobic010G004400 Sobic005G204800--Sobic010G004400 Sobic005G204800--Sobic006G180700 Sobic005G204800--Sobic003G060300 Sobic003G259600 Sobic003G259600 Sobic005G204800--Sobic003G259600 Sobic003G061000 Sobic003G061000 Sobic005G204800--Sobic003G061000 Sobic007G061900 Sobic007G061900 Sobic005G204800--Sobic007G061900
Octagon: transcription factors


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