Gene annotation
Transcriptome id Sobic.001G018100.1
Synonym SK41, ATSK41, Sb01g001760
Functional annotation "qTGW3/GL3.3/TGW3(Ortholog in rice:Hu et al., 2018/Xia et al., 2018/Ying et al., 2018 )" (PubMedID : 31659830)
CGMC_GSK.5 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed
UniProt C5WT17
Pfam PF07714
Panther DB PTHR24057 PTHR24057:SF3
NCBI CDD -
KEGG Orthology K03083; glycogen synthase kinase 3 beta
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT1G09840 : shaggy-like protein kinase 41
RAP-DB (Rice) LOC_Os03g62500.1 : CGMC_GSK.5 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed
MaizeGDB (Corn) Zm00025a016355
Brachypodium KQK12204
Barley HORVU5Hr1G119790.18 , HORVU5Hr1G119790.19 , HORVU5Hr1G119790.29 , HORVU5Hr1G119790.28 , HORVU5Hr1G119790.25 , HORVU5Hr1G119790.24 , HORVU5Hr1G119790.27 , HORVU5Hr1G119790.26 , HORVU5Hr1G119790.21 , HORVU5Hr1G119790.20 , HORVU5Hr1G119790.23 , HORVU5Hr1G119790.22 , HORVU5Hr1G119790.32 , HORVU5Hr1G119790.33 , HORVU5Hr1G119790.30 , HORVU5Hr1G119790.31 , HORVU5Hr1G119790.34
Wheat TraesCS4A02G345500 , TraesCS4A02G345500 , TraesCS1A02G407700 , TraesCS1A02G407700 , TraesCS1A02G407700 , TraesCS5D02G528400 , TraesCS5D02G528400 , TraesCS5D02G528400 , TraesCS5B02G529300 , TraesCS5B02G529300 , TraesCS5B02G529300 , TraesCS1A02G407700 , TraesCS1A02G407700
Populus PNT42970 , PNT42971 , PNT42969 , PNT34294 , PNT34295 , PNT34296 , PNT34297 , PNT34291 , PNT34292 , PNT34293 , PNT34298


JBrowse

Open New Page


cDNA sequences
Sobic.001G018100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G427800 D-alanine--D-alanine ligase family, putative, expressed -
2 Sobic.001G315400 expressed protein -
3 Sobic.004G086200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
4 Sobic.006G180700 SNF2 family N-terminal domain containing protein, expressed K14439: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1
5 Sobic.001G245900 expressed protein -
6 Sobic.002G148400 histone-lysine N-methyltransferase, H3 lysine-4 specific ATX1, putative, expressed -
7 Sobic.005G114400 TBC domain containing protein, expressed -
8 Sobic.006G131200 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K03018: RPC1, DNA-directed RNA polymerase III subunit RPC1
9 Sobic.006G091000 hydrolase, alpha/beta fold family domain containing protein, expressed K13617: protein phosphatase methylesterase 1
10 Sobic.002G223300 nucleoporin p58/p45, putative, expressed K14307: NUPL1, nucleoporin p58/p45
11 Sobic.001G090300 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
12 Sobic.007G125700 NHL repeat-containing protein, putative, expressed -
13 Sobic.008G057000 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
14 Sobic.006G179300 OsFBX64 - F-box domain containing protein, expressed -
15 Sobic.001G454301 - -
16 Sobic.009G213100 beta-galactosidase 8 precursor, putative, expressed K12309: GLB1, beta-galactosidase
17 Sobic.002G389800 expressed protein K14440: SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1
18 Sobic.009G239301 - -
19 Sobic.004G227500 WD-40 repeat family protein, putative, expressed -
20 Sobic.002G105000 OsFBD15 - F-box and FBD domain containing protein, expressed -


Gene co-expression network
sample Sobic001G018100 Sobic001G018100 Sobic002G427800 Sobic002G427800 Sobic001G018100--Sobic002G427800 Sobic001G315400 Sobic001G315400 Sobic001G018100--Sobic001G315400 Sobic004G086200 Sobic004G086200 Sobic001G018100--Sobic004G086200 Sobic006G180700 Sobic006G180700 Sobic001G018100--Sobic006G180700 Sobic001G245900 Sobic001G245900 Sobic001G018100--Sobic001G245900 Sobic002G148400 Sobic002G148400 Sobic001G018100--Sobic002G148400 Sobic005G114400 Sobic005G114400 Sobic001G018100--Sobic005G114400 Sobic006G131200 Sobic006G131200 Sobic001G018100--Sobic006G131200 Sobic006G091000 Sobic006G091000 Sobic001G018100--Sobic006G091000 Sobic002G427800--Sobic001G018100 Sobic002G105000 Sobic002G105000 Sobic002G427800--Sobic002G105000 Sobic007G174900 Sobic007G174900 Sobic002G427800--Sobic007G174900 Sobic006G203400 Sobic006G203400 Sobic002G427800--Sobic006G203400 Sobic009G239301 Sobic009G239301 Sobic002G427800--Sobic009G239301 Sobic004G278900 Sobic004G278900 Sobic002G427800--Sobic004G278900 Sobic007G046900 Sobic007G046900 Sobic002G427800--Sobic007G046900 Sobic006G217200 Sobic006G217200 Sobic002G427800--Sobic006G217200 Sobic002G341200 Sobic002G341200 Sobic002G427800--Sobic002G341200 Sobic001G367100 Sobic001G367100 Sobic001G315400--Sobic001G367100 Sobic003G077500 Sobic003G077500 Sobic001G315400--Sobic003G077500 Sobic002G079100 Sobic002G079100 Sobic001G315400--Sobic002G079100 Sobic002G002100 Sobic002G002100 Sobic001G315400--Sobic002G002100 Sobic005G047300 Sobic005G047300 Sobic001G315400--Sobic005G047300 Sobic002G223300 Sobic002G223300 Sobic001G315400--Sobic002G223300 Sobic004G128200 Sobic004G128200 Sobic001G315400--Sobic004G128200 Sobic004G227500 Sobic004G227500 Sobic001G315400--Sobic004G227500 Sobic001G395200 Sobic001G395200 Sobic001G315400--Sobic001G395200 Sobic001G346900 Sobic001G346900 Sobic004G086200--Sobic001G346900 Sobic004G285000 Sobic004G285000 Sobic004G086200--Sobic004G285000 Sobic001G134300 Sobic001G134300 Sobic004G086200--Sobic001G134300 Sobic004G086200--Sobic001G245900 Sobic001G306900 Sobic001G306900 Sobic004G086200--Sobic001G306900 Sobic010G096000 Sobic010G096000 Sobic004G086200--Sobic010G096000 Sobic010G279900 Sobic010G279900 Sobic004G086200--Sobic010G279900 Sobic001G246500 Sobic001G246500 Sobic004G086200--Sobic001G246500 Sobic010G065300 Sobic010G065300 Sobic004G086200--Sobic010G065300 Sobic009G074700 Sobic009G074700 Sobic006G180700--Sobic009G074700 Sobic001G085700 Sobic001G085700 Sobic006G180700--Sobic001G085700 Sobic006G138000 Sobic006G138000 Sobic006G180700--Sobic006G138000 Sobic009G040800 Sobic009G040800 Sobic006G180700--Sobic009G040800 Sobic009G000400 Sobic009G000400 Sobic006G180700--Sobic009G000400 Sobic001G335900 Sobic001G335900 Sobic006G180700--Sobic001G335900 Sobic009G045200 Sobic009G045200 Sobic006G180700--Sobic009G045200 Sobic006G180700--Sobic006G091000 Sobic005G040900 Sobic005G040900 Sobic006G180700--Sobic005G040900 Sobic001G245900--Sobic004G086200 Sobic001G245900--Sobic001G367100 Sobic001G245900--Sobic010G279900 Sobic001G245900--Sobic001G346900 Sobic008G057000 Sobic008G057000 Sobic001G245900--Sobic008G057000 Sobic003G409200 Sobic003G409200 Sobic001G245900--Sobic003G409200 Sobic001G245900--Sobic001G134300 Sobic001G088900 Sobic001G088900 Sobic001G245900--Sobic001G088900 Sobic001G245900--Sobic006G138000 Sobic004G049700 Sobic004G049700 Sobic002G148400--Sobic004G049700 Sobic009G129600 Sobic009G129600 Sobic002G148400--Sobic009G129600 Sobic002G148400--Sobic008G057000 Sobic001G484200 Sobic001G484200 Sobic002G148400--Sobic001G484200 Sobic002G148400--Sobic001G134300 Sobic004G156500 Sobic004G156500 Sobic002G148400--Sobic004G156500 Sobic002G357100 Sobic002G357100 Sobic002G148400--Sobic002G357100 Sobic002G148400--Sobic004G086200 Sobic001G346700 Sobic001G346700 Sobic002G148400--Sobic001G346700 Sobic003G220700 Sobic003G220700 Sobic005G114400--Sobic003G220700 Sobic007G000800 Sobic007G000800 Sobic005G114400--Sobic007G000800 Sobic002G259800 Sobic002G259800 Sobic005G114400--Sobic002G259800 Sobic005G114400--Sobic001G246500 Sobic009G151200 Sobic009G151200 Sobic005G114400--Sobic009G151200 Sobic002G389800 Sobic002G389800 Sobic005G114400--Sobic002G389800 Sobic005G114400--Sobic006G091000 Sobic001G424600 Sobic001G424600 Sobic005G114400--Sobic001G424600 Sobic004G345700 Sobic004G345700 Sobic005G114400--Sobic004G345700 Sobic003G042400 Sobic003G042400 Sobic006G131200--Sobic003G042400 Sobic006G131200--Sobic009G074700 Sobic006G131200--Sobic001G246500 Sobic006G131200--Sobic004G086200 Sobic010G278600 Sobic010G278600 Sobic006G131200--Sobic010G278600 Sobic006G131200--Sobic002G079100 Sobic006G131200--Sobic001G346900 Sobic006G131200--Sobic009G040800 Sobic006G131200--Sobic006G180700 Sobic006G091000--Sobic009G040800 Sobic005G178950 Sobic005G178950 Sobic006G091000--Sobic005G178950 Sobic004G353400 Sobic004G353400 Sobic006G091000--Sobic004G353400 Sobic006G091000--Sobic005G040900 Sobic004G347100 Sobic004G347100 Sobic006G091000--Sobic004G347100 Sobic010G074900 Sobic010G074900 Sobic006G091000--Sobic010G074900 Sobic007G139400 Sobic007G139400 Sobic006G091000--Sobic007G139400 Sobic010G172400 Sobic010G172400 Sobic006G091000--Sobic010G172400 Sobic006G091000--Sobic005G114400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.