Gene annotation
Transcriptome id Sobic.002G389800.1
Synonym CHA18, Sb02g040560, CHR18
Functional annotation expressed protein
UniProt C5X3A8
Pfam PF00271 PF00176
Panther DB PTHR10799
NCBI CDD KOG1000; Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily
KEGG Orthology K14440; SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT1G48310 : chromatin remodeling factor18
RAP-DB (Rice) LOC_Os07g44210.1 : SNF2 family N-terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a048899 , Zm00025a048906
Brachypodium KQK15029 , PNT74670 , PNT74671
Barley HORVU2Hr1G027290.6 , HORVU2Hr1G027290.7 , HORVU2Hr1G027290.4 , HORVU2Hr1G027290.5 , HORVU2Hr1G027290.2 , HORVU2Hr1G027290.3 , HORVU2Hr1G027290.1 , HORVU2Hr1G027290.8 , HORVU2Hr1G027290.9 , HORVU2Hr1G027290.36 , HORVU2Hr1G027290.37 , HORVU2Hr1G027290.34 , HORVU2Hr1G027290.35 , HORVU2Hr1G027290.32 , HORVU2Hr1G027290.33 , HORVU2Hr1G027290.30 , HORVU2Hr1G027290.31 , HORVU2Hr1G027290.38 , HORVU2Hr1G027290.39 , HORVU2Hr1G027290.43 , HORVU2Hr1G027290.42 , HORVU2Hr1G027290.41 , HORVU2Hr1G027290.40 , HORVU2Hr1G027290.47 , HORVU2Hr1G027290.46 , HORVU2Hr1G027290.45 , HORVU2Hr1G027290.44 , HORVU2Hr1G027290.49 , HORVU2Hr1G027290.48 , HORVU2Hr1G027290.50 , HORVU2Hr1G027290.51 , HORVU2Hr1G027290.52 , HORVU2Hr1G027290.53 , HORVU2Hr1G027290.54 , HORVU2Hr1G027290.55 , HORVU2Hr1G027290.56 , HORVU2Hr1G027290.57 , HORVU2Hr1G027290.58 , HORVU2Hr1G027290.59 , HORVU2Hr1G027290.18 , HORVU2Hr1G027290.19 , HORVU2Hr1G027290.14 , HORVU2Hr1G027290.15 , HORVU2Hr1G027290.16 , HORVU2Hr1G027290.17 , HORVU2Hr1G027290.10 , HORVU2Hr1G027290.11 , HORVU2Hr1G027290.12 , HORVU2Hr1G027290.65 , HORVU2Hr1G027290.64 , HORVU2Hr1G027290.66 , HORVU2Hr1G027290.61 , HORVU2Hr1G027290.60 , HORVU2Hr1G027290.63 , HORVU2Hr1G027290.62 , HORVU2Hr1G027290.21 , HORVU2Hr1G027290.20 , HORVU2Hr1G027290.23 , HORVU2Hr1G027290.22 , HORVU2Hr1G027290.25 , HORVU2Hr1G027290.24 , HORVU2Hr1G027290.27 , HORVU2Hr1G027290.26 , HORVU2Hr1G027290.29 , HORVU2Hr1G027290.28
Wheat TraesCS2D02G156700 , TraesCS2B02G176700 , TraesCS2A02G151600
Populus -


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cDNA sequences
Sobic.002G389800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G114400 TBC domain containing protein, expressed -
2 Sobic.003G289400 farnesyltransferase subunit beta, putative, expressed K05954: protein farnesyltransferase subunit beta
3 Sobic.006G013500 hydrolase/ zinc ion binding protein, putative, expressed K15442: TAD3, tRNA-specific adenosine deaminase 3
4 Sobic.009G074700 heat shock protein binding protein, putative, expressed K09540: SEC63, translocation protein SEC63
5 Sobic.007G026000 ATBET9, putative, expressed -
6 Sobic.007G146900 ARID/BRIGHT DNA-binding domain containing protein, expressed -
7 Sobic.010G202600 zinc finger, C3HC4 type domain containing protein, expressed K10661: MARCH6, E3 ubiquitin-protein ligase MARCH6
8 Sobic.006G276000 CAMK_CAMK_like_ULKh_APGy.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08269: ULK2, serine/threonine-protein kinase ULK2
9 Sobic.010G245000 DTW domain containing protein, putative, expressed -
10 Sobic.007G000800 expressed protein -
11 Sobic.004G078100 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
12 Sobic.006G248500 expressed protein -
13 Sobic.001G215400 OsFBX387 - F-box domain containing protein, expressed -
14 Sobic.003G160000 SUMO protease, putative, expressed K08592: sentrin-specific protease 1
15 Sobic.002G259800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
16 Sobic.001G246500 GTPase of unknown function domain containing protein, putative, expressed -
17 Sobic.008G173100 actin, putative, expressed K11662: ACTR6, actin-related protein 6
18 Sobic.001G026200 heat shock protein DnaJ, putative, expressed K09534: DnaJ homolog subfamily C member 14
19 Sobic.001G306900 tetratricopeptide repeat domain containing protein, expressed K12600: SKI3, superkiller protein 3
20 Sobic.007G191700 expressed protein K08507: unconventional SNARE in the endoplasmic reticulum protein 1


Gene co-expression network
sample Sobic002G389800 Sobic002G389800 Sobic005G114400 Sobic005G114400 Sobic002G389800--Sobic005G114400 Sobic003G289400 Sobic003G289400 Sobic002G389800--Sobic003G289400 Sobic006G013500 Sobic006G013500 Sobic002G389800--Sobic006G013500 Sobic009G074700 Sobic009G074700 Sobic002G389800--Sobic009G074700 Sobic007G026000 Sobic007G026000 Sobic002G389800--Sobic007G026000 Sobic007G146900 Sobic007G146900 Sobic002G389800--Sobic007G146900 Sobic010G202600 Sobic010G202600 Sobic002G389800--Sobic010G202600 Sobic006G276000 Sobic006G276000 Sobic002G389800--Sobic006G276000 Sobic010G245000 Sobic010G245000 Sobic002G389800--Sobic010G245000 Sobic003G220700 Sobic003G220700 Sobic005G114400--Sobic003G220700 Sobic007G000800 Sobic007G000800 Sobic005G114400--Sobic007G000800 Sobic002G259800 Sobic002G259800 Sobic005G114400--Sobic002G259800 Sobic001G246500 Sobic001G246500 Sobic005G114400--Sobic001G246500 Sobic009G151200 Sobic009G151200 Sobic005G114400--Sobic009G151200 Sobic005G114400--Sobic002G389800 Sobic006G091000 Sobic006G091000 Sobic005G114400--Sobic006G091000 Sobic001G424600 Sobic001G424600 Sobic005G114400--Sobic001G424600 Sobic004G345700 Sobic004G345700 Sobic005G114400--Sobic004G345700 Sobic006G173100 Sobic006G173100 Sobic003G289400--Sobic006G173100 Sobic007G118200 Sobic007G118200 Sobic003G289400--Sobic007G118200 Sobic001G091400 Sobic001G091400 Sobic003G289400--Sobic001G091400 Sobic003G289400--Sobic010G245000 Sobic001G090400 Sobic001G090400 Sobic003G289400--Sobic001G090400 Sobic003G081000 Sobic003G081000 Sobic003G289400--Sobic003G081000 Sobic006G195700 Sobic006G195700 Sobic003G289400--Sobic006G195700 Sobic008G014500 Sobic008G014500 Sobic003G289400--Sobic008G014500 Sobic001G408700 Sobic001G408700 Sobic003G289400--Sobic001G408700 Sobic001G206100 Sobic001G206100 Sobic006G013500--Sobic001G206100 Sobic001G257300 Sobic001G257300 Sobic006G013500--Sobic001G257300 Sobic001G306900 Sobic001G306900 Sobic006G013500--Sobic001G306900 Sobic006G080300 Sobic006G080300 Sobic006G013500--Sobic006G080300 Sobic004G031700 Sobic004G031700 Sobic006G013500--Sobic004G031700 Sobic009G000500 Sobic009G000500 Sobic006G013500--Sobic009G000500 Sobic003G197800 Sobic003G197800 Sobic006G013500--Sobic003G197800 Sobic001G094000 Sobic001G094000 Sobic006G013500--Sobic001G094000 Sobic006G046700 Sobic006G046700 Sobic006G013500--Sobic006G046700 Sobic009G074700--Sobic001G246500 Sobic009G074700--Sobic010G202600 Sobic010G278600 Sobic010G278600 Sobic009G074700--Sobic010G278600 Sobic006G180700 Sobic006G180700 Sobic009G074700--Sobic006G180700 Sobic009G074700--Sobic002G259800 Sobic009G000400 Sobic009G000400 Sobic009G074700--Sobic009G000400 Sobic002G262700 Sobic002G262700 Sobic009G074700--Sobic002G262700 Sobic009G195200 Sobic009G195200 Sobic009G074700--Sobic009G195200 Sobic006G138000 Sobic006G138000 Sobic009G074700--Sobic006G138000 Sobic008G153000 Sobic008G153000 Sobic007G026000--Sobic008G153000 Sobic007G026000--Sobic006G046700 Sobic005G059100 Sobic005G059100 Sobic007G026000--Sobic005G059100 Sobic003G445400 Sobic003G445400 Sobic007G026000--Sobic003G445400 Sobic009G119000 Sobic009G119000 Sobic007G026000--Sobic009G119000 Sobic002G153700 Sobic002G153700 Sobic007G026000--Sobic002G153700 Sobic007G026000--Sobic001G206100 Sobic007G026000--Sobic006G013500 Sobic007G026000--Sobic004G031700 Sobic002G353600 Sobic002G353600 Sobic007G146900--Sobic002G353600 Sobic007G146900--Sobic002G153700 Sobic002G264200 Sobic002G264200 Sobic007G146900--Sobic002G264200 Sobic005G207500 Sobic005G207500 Sobic007G146900--Sobic005G207500 Sobic007G146900--Sobic007G026000 Sobic007G146900--Sobic009G119000 Sobic007G119200 Sobic007G119200 Sobic007G146900--Sobic007G119200 Sobic008G054500 Sobic008G054500 Sobic007G146900--Sobic008G054500 Sobic003G397800 Sobic003G397800 Sobic007G146900--Sobic003G397800 Sobic007G111100 Sobic007G111100 Sobic010G202600--Sobic007G111100 Sobic001G469800 Sobic001G469800 Sobic010G202600--Sobic001G469800 Sobic001G131800 Sobic001G131800 Sobic010G202600--Sobic001G131800 Sobic003G185200 Sobic003G185200 Sobic010G202600--Sobic003G185200 Sobic003G205501 Sobic003G205501 Sobic010G202600--Sobic003G205501 Sobic006G267300 Sobic006G267300 Sobic010G202600--Sobic006G267300 Sobic010G202600--Sobic009G000500 Sobic008G174300 Sobic008G174300 Sobic010G202600--Sobic008G174300 Sobic010G202600--Sobic003G081000 Sobic005G046900 Sobic005G046900 Sobic006G276000--Sobic005G046900 Sobic006G276000--Sobic002G262700 Sobic006G276000--Sobic002G389800 Sobic007G191700 Sobic007G191700 Sobic006G276000--Sobic007G191700 Sobic006G278200 Sobic006G278200 Sobic006G276000--Sobic006G278200 Sobic007G041300 Sobic007G041300 Sobic006G276000--Sobic007G041300 Sobic006G248500 Sobic006G248500 Sobic006G276000--Sobic006G248500 Sobic003G253400 Sobic003G253400 Sobic006G276000--Sobic003G253400 Sobic002G095700 Sobic002G095700 Sobic006G276000--Sobic002G095700 Sobic002G056701 Sobic002G056701 Sobic010G245000--Sobic002G056701 Sobic001G176200 Sobic001G176200 Sobic010G245000--Sobic001G176200 Sobic010G245000--Sobic004G345700 Sobic004G084300 Sobic004G084300 Sobic010G245000--Sobic004G084300 Sobic005G154500 Sobic005G154500 Sobic010G245000--Sobic005G154500 Sobic010G245000--Sobic002G264200 Sobic008G173100 Sobic008G173100 Sobic010G245000--Sobic008G173100 Sobic003G241200 Sobic003G241200 Sobic010G245000--Sobic003G241200 Sobic002G260400 Sobic002G260400 Sobic010G245000--Sobic002G260400
Octagon: transcription factors


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