Gene annotation
Transcriptome id Sobic.002G427800.1
Synonym
Functional annotation D-alanine--D-alanine ligase family, putative, expressed
UniProt C5X6B3
Pfam PF07478 PF01820
Panther DB PTHR23132 PTHR23132:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008716; D-alanine-D-alanine ligase activity GO:0005737cytoplasm


Orthologs (automatic annotation)
TAIR AT3G08840 : D-alanine--D-alanine ligase family
RAP-DB (Rice) LOC_Os07g49110.1 : D-alanine--D-alanine ligase family, putative, expressed
MaizeGDB (Corn) Zm00025a015500
Brachypodium KQK14509 , KQK14508
Barley HORVU2Hr1G015430.5 , HORVU2Hr1G015430.4 , HORVU2Hr1G015430.3 , HORVU2Hr1G015430.2 , HORVU2Hr1G015430.1
Wheat TraesCS2D02G091400 , TraesCS2D02G091400 , TraesCS2A02G092400 , TraesCS2B02G107200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G018100 "qTGW3/GL3.3/TGW3(Ortholog in rice:Hu et al., 2018/Xia et al., 2018/Ying et al., 2018 )"(PubMedID : 31659830)@CGMC_GSK.5 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta
2 Sobic.002G105000 OsFBD15 - F-box and FBD domain containing protein, expressed -
3 Sobic.007G174900 carrier, putative, expressed -
4 Sobic.006G203400 "GS2/GL2(Ortholog in rice:Che et al., 2015(PubMedID : 31659900)@growth-regulating factor, putative, expressed -
5 Sobic.009G239301 - -
6 Sobic.004G278900 regulatory protein, putative, expressed -
7 Sobic.007G046900 MBTB32 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
8 Sobic.006G217200 PPR repeat domain containing protein, putative, expressed -
9 Sobic.002G341200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STRUBBELIG-RECEPTOR FAMILY 1 precursor, putative, expressed -
10 Sobic.001G454301 - -
11 Sobic.001G090300 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
12 Sobic.006G022500 OsFBD9 - F-box and FBD domain containing protein, expressed -
13 Sobic.001G346700 Ser/Thr protein phosphatase family protein, putative, expressed -
14 Sobic.002G223300 nucleoporin p58/p45, putative, expressed K14307: NUPL1, nucleoporin p58/p45
15 Sobic.002G073300 - -
16 Sobic.003G244700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
17 Sobic.002G148400 histone-lysine N-methyltransferase, H3 lysine-4 specific ATX1, putative, expressed -
18 Sobic.001G179900 DCL2, putative, expressed K11592: DICER1, endoribonuclease Dicer
19 Sobic.006G091000 hydrolase, alpha/beta fold family domain containing protein, expressed K13617: protein phosphatase methylesterase 1
20 Sobic.002G140800 RNA pseudouridine synthase, putative, expressed -


Gene co-expression network
sample Sobic002G427800 Sobic002G427800 Sobic001G018100 Sobic001G018100 Sobic002G427800--Sobic001G018100 Sobic002G105000 Sobic002G105000 Sobic002G427800--Sobic002G105000 Sobic007G174900 Sobic007G174900 Sobic002G427800--Sobic007G174900 Sobic006G203400 Sobic006G203400 Sobic002G427800--Sobic006G203400 Sobic009G239301 Sobic009G239301 Sobic002G427800--Sobic009G239301 Sobic004G278900 Sobic004G278900 Sobic002G427800--Sobic004G278900 Sobic007G046900 Sobic007G046900 Sobic002G427800--Sobic007G046900 Sobic006G217200 Sobic006G217200 Sobic002G427800--Sobic006G217200 Sobic002G341200 Sobic002G341200 Sobic002G427800--Sobic002G341200 Sobic001G018100--Sobic002G427800 Sobic001G315400 Sobic001G315400 Sobic001G018100--Sobic001G315400 Sobic004G086200 Sobic004G086200 Sobic001G018100--Sobic004G086200 Sobic006G180700 Sobic006G180700 Sobic001G018100--Sobic006G180700 Sobic001G245900 Sobic001G245900 Sobic001G018100--Sobic001G245900 Sobic002G148400 Sobic002G148400 Sobic001G018100--Sobic002G148400 Sobic005G114400 Sobic005G114400 Sobic001G018100--Sobic005G114400 Sobic006G131200 Sobic006G131200 Sobic001G018100--Sobic006G131200 Sobic006G091000 Sobic006G091000 Sobic001G018100--Sobic006G091000 Sobic002G223300 Sobic002G223300 Sobic002G105000--Sobic002G223300 Sobic001G215400 Sobic001G215400 Sobic002G105000--Sobic001G215400 Sobic004G227500 Sobic004G227500 Sobic002G105000--Sobic004G227500 Sobic002G105000--Sobic007G046900 Sobic006G022500 Sobic006G022500 Sobic002G105000--Sobic006G022500 Sobic009G000400 Sobic009G000400 Sobic002G105000--Sobic009G000400 Sobic002G105000--Sobic006G180700 Sobic004G347100 Sobic004G347100 Sobic002G105000--Sobic004G347100 Sobic003G412100 Sobic003G412100 Sobic002G105000--Sobic003G412100 Sobic007G174900--Sobic006G091000 Sobic003G397100 Sobic003G397100 Sobic007G174900--Sobic003G397100 Sobic007G036800 Sobic007G036800 Sobic007G174900--Sobic007G036800 Sobic002G260700 Sobic002G260700 Sobic007G174900--Sobic002G260700 Sobic004G353400 Sobic004G353400 Sobic007G174900--Sobic004G353400 Sobic007G174900--Sobic004G278900 Sobic007G053400 Sobic007G053400 Sobic007G174900--Sobic007G053400 Sobic007G174900--Sobic002G427800 Sobic004G313300 Sobic004G313300 Sobic007G174900--Sobic004G313300 Sobic008G044600 Sobic008G044600 Sobic006G203400--Sobic008G044600 Sobic006G022400 Sobic006G022400 Sobic006G203400--Sobic006G022400 Sobic010G013500 Sobic010G013500 Sobic006G203400--Sobic010G013500 Sobic006G203400--Sobic006G022500 Sobic004G132100 Sobic004G132100 Sobic006G203400--Sobic004G132100 Sobic006G203400--Sobic002G427800 Sobic006G203400--Sobic002G105000 Sobic006G203400--Sobic007G046900 Sobic006G203400--Sobic009G239301 Sobic009G239351 Sobic009G239351 Sobic009G239301--Sobic009G239351 Sobic001G454301 Sobic001G454301 Sobic009G239301--Sobic001G454301 Sobic010G153466 Sobic010G153466 Sobic009G239301--Sobic010G153466 Sobic009G239301--Sobic007G046900 Sobic006G252000 Sobic006G252000 Sobic009G239301--Sobic006G252000 Sobic006G210200 Sobic006G210200 Sobic009G239301--Sobic006G210200 Sobic007G116400 Sobic007G116400 Sobic009G239301--Sobic007G116400 Sobic009G239301--Sobic006G217200 Sobic006G013500 Sobic006G013500 Sobic009G239301--Sobic006G013500 Sobic003G183466 Sobic003G183466 Sobic004G278900--Sobic003G183466 Sobic010G143600 Sobic010G143600 Sobic004G278900--Sobic010G143600 Sobic010G235700 Sobic010G235700 Sobic004G278900--Sobic010G235700 Sobic004G278900--Sobic003G397100 Sobic003G299500 Sobic003G299500 Sobic004G278900--Sobic003G299500 Sobic001G123600 Sobic001G123600 Sobic004G278900--Sobic001G123600 Sobic006G184200 Sobic006G184200 Sobic004G278900--Sobic006G184200 Sobic006G191200 Sobic006G191200 Sobic004G278900--Sobic006G191200 Sobic007G034200 Sobic007G034200 Sobic004G278900--Sobic007G034200 Sobic004G078100 Sobic004G078100 Sobic007G046900--Sobic004G078100 Sobic002G060450 Sobic002G060450 Sobic007G046900--Sobic002G060450 Sobic007G046900--Sobic002G223300 Sobic002G018600 Sobic002G018600 Sobic007G046900--Sobic002G018600 Sobic007G046900--Sobic001G215400 Sobic002G095700 Sobic002G095700 Sobic007G046900--Sobic002G095700 Sobic007G046900--Sobic009G239301 Sobic002G089900 Sobic002G089900 Sobic007G046900--Sobic002G089900 Sobic003G433500 Sobic003G433500 Sobic007G046900--Sobic003G433500 Sobic006G217200--Sobic001G454301 Sobic002G421700 Sobic002G421700 Sobic006G217200--Sobic002G421700 Sobic005G133500 Sobic005G133500 Sobic006G217200--Sobic005G133500 Sobic002G259800 Sobic002G259800 Sobic006G217200--Sobic002G259800 Sobic007G000800 Sobic007G000800 Sobic006G217200--Sobic007G000800 Sobic003G239900 Sobic003G239900 Sobic006G217200--Sobic003G239900 Sobic009G151200 Sobic009G151200 Sobic006G217200--Sobic009G151200 Sobic005G009200 Sobic005G009200 Sobic006G217200--Sobic005G009200 Sobic006G217200--Sobic006G013500 Sobic002G341200--Sobic001G315400 Sobic002G050500 Sobic002G050500 Sobic002G341200--Sobic002G050500 Sobic001G372900 Sobic001G372900 Sobic002G341200--Sobic001G372900 Sobic002G341200--Sobic002G223300 Sobic004G289500 Sobic004G289500 Sobic002G341200--Sobic004G289500 Sobic001G395200 Sobic001G395200 Sobic002G341200--Sobic001G395200 Sobic003G077500 Sobic003G077500 Sobic002G341200--Sobic003G077500 Sobic009G213100 Sobic009G213100 Sobic002G341200--Sobic009G213100 Sobic001G346700 Sobic001G346700 Sobic002G341200--Sobic001G346700
Octagon: transcription factors


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