Gene annotation
Transcriptome id Sobic.006G203400.1
Synonym AtGRF5, GRF5, Sb06g027465
Functional annotation "GS2/GL2(Ortholog in rice:Che et al., 2015 (PubMedID : 31659900)
growth-regulating factor, putative, expressed
UniProt C5YF61
Pfam PF08880 PF08879
Panther DB PTHR31602 PTHR31602:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0005524ATP binding GO:0006351transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT3G13960 : growth-regulating factor 5
RAP-DB (Rice) LOC_Os04g51190.2 : growth-regulating factor, putative, expressed
MaizeGDB (Corn) Zm00025a056942 , Zm00025a050243 , Zm00025a042463 , Zm00025a009932 , Zm00025a021685 , Zm00025a041311 , Zm00025a032451
Brachypodium KQJ84396 , KQK19811 , PNT76252 , PNT76253 , KQK00900
Barley HORVU0Hr1G016610.1 , HORVU0Hr1G016610.3 , HORVU4Hr1G010080.7 , HORVU4Hr1G010080.6 , HORVU4Hr1G010080.5 , HORVU4Hr1G010080.4 , HORVU4Hr1G010080.3 , HORVU4Hr1G010080.2 , HORVU4Hr1G010080.9 , HORVU4Hr1G010080.8 , HORVU6Hr1G068370.10 , HORVU0Hr1G026650.1 , HORVU6Hr1G068370.8 , HORVU6Hr1G068370.9 , HORVU6Hr1G068370.4 , HORVU6Hr1G068370.5 , HORVU6Hr1G068370.6 , HORVU6Hr1G068370.7 , HORVU6Hr1G068370.1 , HORVU6Hr1G068370.2 , HORVU6Hr1G068370.3 , HORVU7Hr1G008680.13 , HORVU7Hr1G008680.12 , HORVU7Hr1G008680.11 , HORVU7Hr1G008680.10 , HORVU7Hr1G008680.14 , HORVU2Hr1G101770.18 , HORVU2Hr1G101770.19 , HORVU2Hr1G101770.14 , HORVU2Hr1G101770.15 , HORVU2Hr1G101770.16 , HORVU2Hr1G101770.17 , HORVU2Hr1G101770.10 , HORVU2Hr1G101770.11 , HORVU2Hr1G101770.13 , HORVU4Hr1G010080.12 , HORVU4Hr1G010080.11 , HORVU4Hr1G010080.10 , HORVU2Hr1G101770.6 , HORVU2Hr1G101770.7 , HORVU2Hr1G101770.4 , HORVU2Hr1G101770.3 , HORVU2Hr1G101770.8 , HORVU2Hr1G101770.9 , HORVU7Hr1G008680.9 , HORVU7Hr1G008680.8 , HORVU7Hr1G008680.3 , HORVU7Hr1G008680.2 , HORVU7Hr1G008680.7 , HORVU7Hr1G008680.6 , HORVU7Hr1G008680.5 , HORVU7Hr1G008680.4 , HORVU7Hr1G034610.5 , HORVU7Hr1G034610.4 , HORVU7Hr1G034610.3 , HORVU7Hr1G034610.2 , HORVU7Hr1G034610.1 , HORVU0Hr1G016590.2 , HORVU0Hr1G016590.1 , HORVU7Hr1G008680.1
Wheat TraesCS4A02G255000 , TraesCS2A02G435100 , TraesCS2B02G458400 , TraesCS6D02G245300 , TraesCS7A02G049100 , TraesCS7A02G049100 , TraesCS2D02G435200 , TraesCS4B02G060000 , TraesCS6B02G296900 , TraesCS4D02G059600 , TraesCS7D02G044200 , TraesCS6A02G269600 , TraesCS4A02G434900
Populus PNT07290 , PNT31060


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cDNA sequences
Sobic.006G203400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G044600 expressed protein -
2 Sobic.006G022400 F-box/RNI-like/FBD-like domains-containing protein("PubMedID : 26759170,PubMedID : 24597475")@OsFBD9 - F-box and FBD domain containing protein, expressed -
3 Sobic.010G013500 growth-regulating factor, putative, expressed -
4 Sobic.006G022500 OsFBD9 - F-box and FBD domain containing protein, expressed -
5 Sobic.004G132100 ATP binding protein, putative, expressed -
6 Sobic.002G427800 D-alanine--D-alanine ligase family, putative, expressed -
7 Sobic.002G105000 OsFBD15 - F-box and FBD domain containing protein, expressed -
8 Sobic.007G046900 MBTB32 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
9 Sobic.009G239301 - -
10 Sobic.001G217300 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@auxin response factor 18, putative, expressed -
11 Sobic.009G216500 expressed protein -
12 Sobic.004G148900 ankyrin, putative, expressed -
13 Sobic.004G207000 fasciated ear2, putative, expressed -
14 Sobic.009G205400 RING-H2 finger protein ATL2M, putative, expressed -
15 Sobic.001G018100 "qTGW3/GL3.3/TGW3(Ortholog in rice:Hu et al., 2018/Xia et al., 2018/Ying et al., 2018 )"(PubMedID : 31659830)@CGMC_GSK.5 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta
16 Sobic.004G229100 OsFBX61 - F-box domain containing protein, expressed -
17 Sobic.002G284400 peroxisomal multifunctional enzyme type 2, putative, expressed -
18 Sobic.004G149400 ankyrin, putative, expressed -
19 Sobic.004G189700 OsFBL33 - F-box domain and LRR containing protein, expressed -
20 Sobic.010G235700 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -


Gene co-expression network
sample Sobic006G203400 Sobic006G203400 Sobic008G044600 Sobic008G044600 Sobic006G203400--Sobic008G044600 Sobic006G022400 Sobic006G022400 Sobic006G203400--Sobic006G022400 Sobic010G013500 Sobic010G013500 Sobic006G203400--Sobic010G013500 Sobic006G022500 Sobic006G022500 Sobic006G203400--Sobic006G022500 Sobic004G132100 Sobic004G132100 Sobic006G203400--Sobic004G132100 Sobic002G427800 Sobic002G427800 Sobic006G203400--Sobic002G427800 Sobic002G105000 Sobic002G105000 Sobic006G203400--Sobic002G105000 Sobic007G046900 Sobic007G046900 Sobic006G203400--Sobic007G046900 Sobic009G239301 Sobic009G239301 Sobic006G203400--Sobic009G239301 Sobic008G044600--Sobic006G022400 Sobic004G207000 Sobic004G207000 Sobic008G044600--Sobic004G207000 Sobic008G044600--Sobic006G203400 Sobic003G131100 Sobic003G131100 Sobic008G044600--Sobic003G131100 Sobic007G023100 Sobic007G023100 Sobic008G044600--Sobic007G023100 Sobic006G046600 Sobic006G046600 Sobic008G044600--Sobic006G046600 Sobic004G229100 Sobic004G229100 Sobic008G044600--Sobic004G229100 Sobic006G081500 Sobic006G081500 Sobic008G044600--Sobic006G081500 Sobic001G494100 Sobic001G494100 Sobic008G044600--Sobic001G494100 Sobic006G022400--Sobic004G207000 Sobic001G079900 Sobic001G079900 Sobic006G022400--Sobic001G079900 Sobic009G216500 Sobic009G216500 Sobic006G022400--Sobic009G216500 Sobic005G177900 Sobic005G177900 Sobic006G022400--Sobic005G177900 Sobic001G395200 Sobic001G395200 Sobic006G022400--Sobic001G395200 Sobic003G351900 Sobic003G351900 Sobic006G022400--Sobic003G351900 Sobic006G022400--Sobic006G022500 Sobic008G169400 Sobic008G169400 Sobic006G022400--Sobic008G169400 Sobic005G032600 Sobic005G032600 Sobic006G022400--Sobic005G032600 Sobic009G000600 Sobic009G000600 Sobic010G013500--Sobic009G000600 Sobic004G199200 Sobic004G199200 Sobic010G013500--Sobic004G199200 Sobic010G013500--Sobic006G022400 Sobic002G223300 Sobic002G223300 Sobic010G013500--Sobic002G223300 Sobic002G284400 Sobic002G284400 Sobic010G013500--Sobic002G284400 Sobic001G290500 Sobic001G290500 Sobic010G013500--Sobic001G290500 Sobic001G372900 Sobic001G372900 Sobic010G013500--Sobic001G372900 Sobic006G281900 Sobic006G281900 Sobic010G013500--Sobic006G281900 Sobic005G120600 Sobic005G120600 Sobic010G013500--Sobic005G120600 Sobic004G227500 Sobic004G227500 Sobic006G022500--Sobic004G227500 Sobic004G148600 Sobic004G148600 Sobic006G022500--Sobic004G148600 Sobic001G384600 Sobic001G384600 Sobic006G022500--Sobic001G384600 Sobic002G073300 Sobic002G073300 Sobic006G022500--Sobic002G073300 Sobic002G060450 Sobic002G060450 Sobic006G022500--Sobic002G060450 Sobic004G189700 Sobic004G189700 Sobic006G022500--Sobic004G189700 Sobic001G045700 Sobic001G045700 Sobic006G022500--Sobic001G045700 Sobic006G022500--Sobic006G022400 Sobic006G022500--Sobic005G177900 Sobic005G096800 Sobic005G096800 Sobic004G132100--Sobic005G096800 Sobic004G132100--Sobic006G022500 Sobic004G204400 Sobic004G204400 Sobic004G132100--Sobic004G204400 Sobic004G005400 Sobic004G005400 Sobic004G132100--Sobic004G005400 Sobic005G127300 Sobic005G127300 Sobic004G132100--Sobic005G127300 Sobic002G019600 Sobic002G019600 Sobic004G132100--Sobic002G019600 Sobic004G045566 Sobic004G045566 Sobic004G132100--Sobic004G045566 Sobic002G182300 Sobic002G182300 Sobic004G132100--Sobic002G182300 Sobic010G033700 Sobic010G033700 Sobic004G132100--Sobic010G033700 Sobic001G018100 Sobic001G018100 Sobic002G427800--Sobic001G018100 Sobic002G427800--Sobic002G105000 Sobic007G174900 Sobic007G174900 Sobic002G427800--Sobic007G174900 Sobic002G427800--Sobic006G203400 Sobic002G427800--Sobic009G239301 Sobic004G278900 Sobic004G278900 Sobic002G427800--Sobic004G278900 Sobic002G427800--Sobic007G046900 Sobic006G217200 Sobic006G217200 Sobic002G427800--Sobic006G217200 Sobic002G341200 Sobic002G341200 Sobic002G427800--Sobic002G341200 Sobic002G105000--Sobic002G223300 Sobic001G215400 Sobic001G215400 Sobic002G105000--Sobic001G215400 Sobic002G105000--Sobic004G227500 Sobic002G105000--Sobic007G046900 Sobic002G105000--Sobic006G022500 Sobic009G000400 Sobic009G000400 Sobic002G105000--Sobic009G000400 Sobic006G180700 Sobic006G180700 Sobic002G105000--Sobic006G180700 Sobic004G347100 Sobic004G347100 Sobic002G105000--Sobic004G347100 Sobic003G412100 Sobic003G412100 Sobic002G105000--Sobic003G412100 Sobic004G078100 Sobic004G078100 Sobic007G046900--Sobic004G078100 Sobic007G046900--Sobic002G060450 Sobic007G046900--Sobic002G223300 Sobic002G018600 Sobic002G018600 Sobic007G046900--Sobic002G018600 Sobic007G046900--Sobic001G215400 Sobic002G095700 Sobic002G095700 Sobic007G046900--Sobic002G095700 Sobic007G046900--Sobic009G239301 Sobic002G089900 Sobic002G089900 Sobic007G046900--Sobic002G089900 Sobic003G433500 Sobic003G433500 Sobic007G046900--Sobic003G433500 Sobic009G239351 Sobic009G239351 Sobic009G239301--Sobic009G239351 Sobic001G454301 Sobic001G454301 Sobic009G239301--Sobic001G454301 Sobic010G153466 Sobic010G153466 Sobic009G239301--Sobic010G153466 Sobic009G239301--Sobic007G046900 Sobic006G252000 Sobic006G252000 Sobic009G239301--Sobic006G252000 Sobic006G210200 Sobic006G210200 Sobic009G239301--Sobic006G210200 Sobic007G116400 Sobic007G116400 Sobic009G239301--Sobic007G116400 Sobic009G239301--Sobic006G217200 Sobic006G013500 Sobic006G013500 Sobic009G239301--Sobic006G013500
Octagon: transcription factors


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