Gene annotation
Transcriptome id Sobic.009G205400.1
Synonym Sb09g026220
Functional annotation RING-H2 finger protein ATL2M, putative, expressed
UniProt C5Z1F0
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF71
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G61550 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os01g53500.1 : RING-H2 finger protein ATL2M, putative, expressed
MaizeGDB (Corn) Zm00025a040085 , Zm00025a044284
Brachypodium PNT72790
Barley HORVU3Hr1G069960.1 , HORVU1Hr1G082030.1 , HORVU1Hr1G082030.2
Wheat TraesCS3B02G313100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G254000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase, putative, expressed -
2 Sobic.004G207000 fasciated ear2, putative, expressed -
3 Sobic.006G081500 receptor-like kinase, putative, expressed -
4 Sobic.003G240100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.006G022400 F-box/RNI-like/FBD-like domains-containing protein("PubMedID : 26759170,PubMedID : 24597475")@OsFBD9 - F-box and FBD domain containing protein, expressed -
6 Sobic.001G138900 expressed protein -
7 Sobic.003G049600 CESA1 - cellulose synthase, expressed K10999: cellulose synthase A
8 Sobic.003G224700 glycosyltransferase family protein 1, putative, expressed -
9 Sobic.003G351900 fasciclin-like arabinogalactan protein, putative, expressed -
10 Sobic.006G212500 - -
11 Sobic.004G145300 OsFBD12 - F-box and FBD domain containing protein, expressed -
12 Sobic.002G302600 OsFBX291 - F-box domain containing protein, expressed -
13 Sobic.003G100700 serine/threonine-protein kinase, putative, expressed -
14 Sobic.005G013300 vacuolar-sorting receptor precursor, putative, expressed -
15 Sobic.002G110500 expressed protein K14308: NUP54, nuclear pore complex protein Nup54
16 Sobic.003G153900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.010G092801 - -
18 Sobic.004G041100 ATEXO70G1, putative, expressed K07195: EXOC7, exocyst complex component 7
19 Sobic.006G203400 "GS2/GL2(Ortholog in rice:Che et al., 2015(PubMedID : 31659900)@growth-regulating factor, putative, expressed -
20 Sobic.010G277200 zinc knuckle domain containing protein, expressed K10904: TIMELESS-interacting protein


Gene co-expression network
sample Sobic009G205400 Sobic009G205400 Sobic009G254000 Sobic009G254000 Sobic009G205400--Sobic009G254000 Sobic004G207000 Sobic004G207000 Sobic009G205400--Sobic004G207000 Sobic006G081500 Sobic006G081500 Sobic009G205400--Sobic006G081500 Sobic003G240100 Sobic003G240100 Sobic009G205400--Sobic003G240100 Sobic006G022400 Sobic006G022400 Sobic009G205400--Sobic006G022400 Sobic001G138900 Sobic001G138900 Sobic009G205400--Sobic001G138900 Sobic003G049600 Sobic003G049600 Sobic009G205400--Sobic003G049600 Sobic003G224700 Sobic003G224700 Sobic009G205400--Sobic003G224700 Sobic003G351900 Sobic003G351900 Sobic009G205400--Sobic003G351900 Sobic006G140300 Sobic006G140300 Sobic009G254000--Sobic006G140300 Sobic007G197100 Sobic007G197100 Sobic009G254000--Sobic007G197100 Sobic003G298900 Sobic003G298900 Sobic009G254000--Sobic003G298900 Sobic002G366000 Sobic002G366000 Sobic009G254000--Sobic002G366000 Sobic001G540700 Sobic001G540700 Sobic009G254000--Sobic001G540700 Sobic009G254000--Sobic003G224700 Sobic002G006100 Sobic002G006100 Sobic009G254000--Sobic002G006100 Sobic004G250600 Sobic004G250600 Sobic009G254000--Sobic004G250600 Sobic005G013300 Sobic005G013300 Sobic009G254000--Sobic005G013300 Sobic004G207000--Sobic006G022400 Sobic004G207000--Sobic001G540700 Sobic007G125700 Sobic007G125700 Sobic004G207000--Sobic007G125700 Sobic009G006900 Sobic009G006900 Sobic004G207000--Sobic009G006900 Sobic002G302600 Sobic002G302600 Sobic004G207000--Sobic002G302600 Sobic004G149400 Sobic004G149400 Sobic004G207000--Sobic004G149400 Sobic005G032600 Sobic005G032600 Sobic004G207000--Sobic005G032600 Sobic010G149600 Sobic010G149600 Sobic004G207000--Sobic010G149600 Sobic009G031500 Sobic009G031500 Sobic004G207000--Sobic009G031500 Sobic001G372900 Sobic001G372900 Sobic006G081500--Sobic001G372900 Sobic001G296100 Sobic001G296100 Sobic006G081500--Sobic001G296100 Sobic001G499200 Sobic001G499200 Sobic006G081500--Sobic001G499200 Sobic006G081500--Sobic003G351900 Sobic006G081500--Sobic001G540700 Sobic003G283600 Sobic003G283600 Sobic006G081500--Sobic003G283600 Sobic006G081500--Sobic006G022400 Sobic006G142500 Sobic006G142500 Sobic006G081500--Sobic006G142500 Sobic003G153900 Sobic003G153900 Sobic006G081500--Sobic003G153900 Sobic002G253900 Sobic002G253900 Sobic003G240100--Sobic002G253900 Sobic003G240100--Sobic002G006100 Sobic001G382400 Sobic001G382400 Sobic003G240100--Sobic001G382400 Sobic003G217500 Sobic003G217500 Sobic003G240100--Sobic003G217500 Sobic001G123100 Sobic001G123100 Sobic003G240100--Sobic001G123100 Sobic001G369800 Sobic001G369800 Sobic003G240100--Sobic001G369800 Sobic008G026400 Sobic008G026400 Sobic003G240100--Sobic008G026400 Sobic003G240100--Sobic009G254000 Sobic004G145300 Sobic004G145300 Sobic003G240100--Sobic004G145300 Sobic006G022400--Sobic004G207000 Sobic001G079900 Sobic001G079900 Sobic006G022400--Sobic001G079900 Sobic009G216500 Sobic009G216500 Sobic006G022400--Sobic009G216500 Sobic005G177900 Sobic005G177900 Sobic006G022400--Sobic005G177900 Sobic001G395200 Sobic001G395200 Sobic006G022400--Sobic001G395200 Sobic006G022400--Sobic003G351900 Sobic006G022500 Sobic006G022500 Sobic006G022400--Sobic006G022500 Sobic008G169400 Sobic008G169400 Sobic006G022400--Sobic008G169400 Sobic006G022400--Sobic005G032600 Sobic003G091200 Sobic003G091200 Sobic001G138900--Sobic003G091200 Sobic001G138900--Sobic004G149400 Sobic005G062600 Sobic005G062600 Sobic001G138900--Sobic005G062600 Sobic001G212600 Sobic001G212600 Sobic001G138900--Sobic001G212600 Sobic001G138900--Sobic004G207000 Sobic010G222800 Sobic010G222800 Sobic001G138900--Sobic010G222800 Sobic005G160200 Sobic005G160200 Sobic001G138900--Sobic005G160200 Sobic006G106200 Sobic006G106200 Sobic001G138900--Sobic006G106200 Sobic004G327600 Sobic004G327600 Sobic001G138900--Sobic004G327600 Sobic009G257500 Sobic009G257500 Sobic003G049600--Sobic009G257500 Sobic004G278900 Sobic004G278900 Sobic003G049600--Sobic004G278900 Sobic003G049600--Sobic009G254000 Sobic003G049600--Sobic003G298900 Sobic003G049600--Sobic001G395200 Sobic009G032200 Sobic009G032200 Sobic003G049600--Sobic009G032200 Sobic002G335500 Sobic002G335500 Sobic003G049600--Sobic002G335500 Sobic003G049600--Sobic007G125700 Sobic003G049600--Sobic002G006100 Sobic003G224700--Sobic001G123100 Sobic003G224700--Sobic004G145300 Sobic003G224700--Sobic009G254000 Sobic001G123300 Sobic001G123300 Sobic003G224700--Sobic001G123300 Sobic007G106300 Sobic007G106300 Sobic003G224700--Sobic007G106300 Sobic002G343000 Sobic002G343000 Sobic003G224700--Sobic002G343000 Sobic002G284100 Sobic002G284100 Sobic003G224700--Sobic002G284100 Sobic003G224700--Sobic001G369800 Sobic006G200901 Sobic006G200901 Sobic003G224700--Sobic006G200901 Sobic003G351900--Sobic006G142500 Sobic003G351900--Sobic001G079900 Sobic003G351900--Sobic002G006100 Sobic002G027600 Sobic002G027600 Sobic003G351900--Sobic002G027600 Sobic003G351900--Sobic003G153900 Sobic003G351900--Sobic001G212600 Sobic003G351900--Sobic005G032600 Sobic004G164700 Sobic004G164700 Sobic003G351900--Sobic004G164700 Sobic003G351900--Sobic001G395200
Octagon: transcription factors


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