Gene annotation
Transcriptome id Sobic.003G347300.1
Synonym Sb03g039030
Functional annotation TBC domain containing protein, expressed
UniProt C5XP18
Pfam PF00566
Panther DB PTHR22957:SF328 PTHR22957
NCBI CDD KOG2058; Ypt/Rab GTPase activating protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G55020 : Ypt/Rab-GAP domain of gyp1p superfamily protein
RAP-DB (Rice) LOC_Os01g61860.1 : TBC domain containing protein, expressed
MaizeGDB (Corn) Zm00025a026967 , Zm00025a037728 , Zm00025a012460
Brachypodium KQK05840 , KQK10463 , KQK05839 , KQK05838
Barley HORVU3Hr1G087250.9 , HORVU3Hr1G087250.8 , HORVU3Hr1G087250.5 , HORVU3Hr1G087250.4 , HORVU3Hr1G087250.7 , HORVU3Hr1G087250.6 , HORVU3Hr1G087250.1 , HORVU3Hr1G087250.3 , HORVU3Hr1G087250.2 , HORVU3Hr1G087250.13 , HORVU3Hr1G087250.12 , HORVU3Hr1G087250.15 , HORVU3Hr1G087250.18 , HORVU3Hr1G087250.11 , HORVU3Hr1G087250.10 , HORVU3Hr1G087250.14 , HORVU3Hr1G087250.17 , HORVU3Hr1G087250.16
Wheat TraesCS3A02G353700 , TraesCS3A02G353700 , TraesCS3A02G353700 , TraesCS3D02G347700 , TraesCS3D02G347700 , TraesCS3D02G347700 , TraesCS1D02G289200 , TraesCS1D02G289200 , TraesCS1D02G289200 , TraesCS1D02G289200 , TraesCS1A02G290500 , TraesCS1A02G290500 , TraesCS1B02G299800 , TraesCS1B02G299800 , TraesCS1B02G299800 , TraesCS3B02G386400 , TraesCS3B02G386400 , TraesCS3B02G386400 , TraesCS3B02G386400
Populus -


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cDNA sequences
Sobic.003G347300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G218700 mitochondrial carrier protein, putative, expressed K15121: solute carrier family 25, member 44
2 Sobic.001G021500 CESA5 - cellulose synthase, expressed K10999: cellulose synthase A
3 Sobic.002G033700 AIR9 protein, putative, expressed -
4 Sobic.009G126000 mannosylglycoprotein endo-beta-mannosidase, putative, expressed K18577: mannosylglycoprotein endo-beta-mannosidase
5 Sobic.006G254500 IQ calmodulin-binding motif family protein, putative, expressed -
6 Sobic.009G030300 RNA polymerase II-associated protein 3, putative, expressed -
7 Sobic.009G013700 pectinacetylesterase domain containing protein, expressed -
8 Sobic.009G123500 TKL_IRAK_CR4L.5 - The CR4L subfamily has homology with Crinkly4, expressed -
9 Sobic.008G086200 expressed protein -
10 Sobic.009G253400 hyaluronan/mRNA binding family domain containing protein, expressed K13199: plasminogen activator inhibitor 1 RNA-binding protein
11 Sobic.001G315400 expressed protein -
12 Sobic.004G053300 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
13 Sobic.005G059400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized PPR-repeat protein, putative, expressed -
14 Sobic.008G008400 F-box/LRR-repeat protein 3, putative, expressed -
15 Sobic.004G225700 F-box/LRR-repeat protein 2, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20
16 Sobic.004G227500 WD-40 repeat family protein, putative, expressed -
17 Sobic.004G135500 - -
18 Sobic.005G159600 lymphoid organ expressed yellow head virus receptor protein, putative, expressed -
19 Sobic.004G048000 DUF292 domain containing protein, expressed -
20 Sobic.002G130900 zinc finger family protein, putative, expressed K18932: palmitoyltransferase


Gene co-expression network
sample Sobic003G347300 Sobic003G347300 Sobic002G218700 Sobic002G218700 Sobic003G347300--Sobic002G218700 Sobic001G021500 Sobic001G021500 Sobic003G347300--Sobic001G021500 Sobic002G033700 Sobic002G033700 Sobic003G347300--Sobic002G033700 Sobic009G126000 Sobic009G126000 Sobic003G347300--Sobic009G126000 Sobic006G254500 Sobic006G254500 Sobic003G347300--Sobic006G254500 Sobic009G030300 Sobic009G030300 Sobic003G347300--Sobic009G030300 Sobic009G013700 Sobic009G013700 Sobic003G347300--Sobic009G013700 Sobic009G123500 Sobic009G123500 Sobic003G347300--Sobic009G123500 Sobic008G086200 Sobic008G086200 Sobic003G347300--Sobic008G086200 Sobic002G218700--Sobic003G347300 Sobic010G046400 Sobic010G046400 Sobic002G218700--Sobic010G046400 Sobic001G247200 Sobic001G247200 Sobic002G218700--Sobic001G247200 Sobic002G218700--Sobic009G030300 Sobic010G256000 Sobic010G256000 Sobic002G218700--Sobic010G256000 Sobic003G131200 Sobic003G131200 Sobic002G218700--Sobic003G131200 Sobic004G227500 Sobic004G227500 Sobic002G218700--Sobic004G227500 Sobic009G253400 Sobic009G253400 Sobic002G218700--Sobic009G253400 Sobic004G225700 Sobic004G225700 Sobic002G218700--Sobic004G225700 Sobic004G243400 Sobic004G243400 Sobic001G021500--Sobic004G243400 Sobic002G377300 Sobic002G377300 Sobic001G021500--Sobic002G377300 Sobic009G055900 Sobic009G055900 Sobic001G021500--Sobic009G055900 Sobic003G165800 Sobic003G165800 Sobic001G021500--Sobic003G165800 Sobic008G190500 Sobic008G190500 Sobic001G021500--Sobic008G190500 Sobic001G021500--Sobic003G347300 Sobic010G123300 Sobic010G123300 Sobic001G021500--Sobic010G123300 Sobic009G144200 Sobic009G144200 Sobic001G021500--Sobic009G144200 Sobic007G210900 Sobic007G210900 Sobic001G021500--Sobic007G210900 Sobic002G033700--Sobic003G347300 Sobic006G184100 Sobic006G184100 Sobic002G033700--Sobic006G184100 Sobic010G090500 Sobic010G090500 Sobic002G033700--Sobic010G090500 Sobic008G125100 Sobic008G125100 Sobic002G033700--Sobic008G125100 Sobic004G149800 Sobic004G149800 Sobic002G033700--Sobic004G149800 Sobic009G122900 Sobic009G122900 Sobic002G033700--Sobic009G122900 Sobic002G033700--Sobic001G021500 Sobic002G033700--Sobic006G254500 Sobic004G178400 Sobic004G178400 Sobic002G033700--Sobic004G178400 Sobic010G106900 Sobic010G106900 Sobic009G126000--Sobic010G106900 Sobic002G127400 Sobic002G127400 Sobic009G126000--Sobic002G127400 Sobic009G213100 Sobic009G213100 Sobic009G126000--Sobic009G213100 Sobic009G055400 Sobic009G055400 Sobic009G126000--Sobic009G055400 Sobic005G059400 Sobic005G059400 Sobic009G126000--Sobic005G059400 Sobic009G126000--Sobic003G347300 Sobic010G099800 Sobic010G099800 Sobic009G126000--Sobic010G099800 Sobic005G216300 Sobic005G216300 Sobic009G126000--Sobic005G216300 Sobic009G045200 Sobic009G045200 Sobic009G126000--Sobic009G045200 Sobic006G267500 Sobic006G267500 Sobic006G254500--Sobic006G267500 Sobic009G212100 Sobic009G212100 Sobic006G254500--Sobic009G212100 Sobic004G315700 Sobic004G315700 Sobic006G254500--Sobic004G315700 Sobic002G393200 Sobic002G393200 Sobic006G254500--Sobic002G393200 Sobic007G166800 Sobic007G166800 Sobic006G254500--Sobic007G166800 Sobic001G285200 Sobic001G285200 Sobic006G254500--Sobic001G285200 Sobic003G077500 Sobic003G077500 Sobic006G254500--Sobic003G077500 Sobic001G487200 Sobic001G487200 Sobic006G254500--Sobic001G487200 Sobic009G206500 Sobic009G206500 Sobic006G254500--Sobic009G206500 Sobic002G177400 Sobic002G177400 Sobic009G030300--Sobic002G177400 Sobic001G226000 Sobic001G226000 Sobic009G030300--Sobic001G226000 Sobic004G061900 Sobic004G061900 Sobic009G030300--Sobic004G061900 Sobic009G044900 Sobic009G044900 Sobic009G030300--Sobic009G044900 Sobic004G013600 Sobic004G013600 Sobic009G030300--Sobic004G013600 Sobic004G088400 Sobic004G088400 Sobic009G030300--Sobic004G088400 Sobic008G117200 Sobic008G117200 Sobic009G030300--Sobic008G117200 Sobic002G334600 Sobic002G334600 Sobic009G030300--Sobic002G334600 Sobic008G129700 Sobic008G129700 Sobic009G030300--Sobic008G129700 Sobic009G013700--Sobic009G030300 Sobic008G008400 Sobic008G008400 Sobic009G013700--Sobic008G008400 Sobic006G033700 Sobic006G033700 Sobic009G013700--Sobic006G033700 Sobic010G242900 Sobic010G242900 Sobic009G013700--Sobic010G242900 Sobic001G215900 Sobic001G215900 Sobic009G013700--Sobic001G215900 Sobic009G013700--Sobic001G226000 Sobic009G013700--Sobic003G347300 Sobic002G168600 Sobic002G168600 Sobic009G013700--Sobic002G168600 Sobic009G013700--Sobic002G218700 Sobic009G123500--Sobic008G086200 Sobic005G159600 Sobic005G159600 Sobic009G123500--Sobic005G159600 Sobic003G277900 Sobic003G277900 Sobic009G123500--Sobic003G277900 Sobic009G123500--Sobic003G347300 Sobic009G123500--Sobic008G190500 Sobic004G006700 Sobic004G006700 Sobic009G123500--Sobic004G006700 Sobic001G435201 Sobic001G435201 Sobic009G123500--Sobic001G435201 Sobic010G118700 Sobic010G118700 Sobic009G123500--Sobic010G118700 Sobic004G053300 Sobic004G053300 Sobic009G123500--Sobic004G053300 Sobic008G086200--Sobic004G225700 Sobic009G175200 Sobic009G175200 Sobic008G086200--Sobic009G175200 Sobic003G174900 Sobic003G174900 Sobic008G086200--Sobic003G174900 Sobic003G375000 Sobic003G375000 Sobic008G086200--Sobic003G375000 Sobic008G086200--Sobic009G123500 Sobic008G086200--Sobic008G190500 Sobic004G289500 Sobic004G289500 Sobic008G086200--Sobic004G289500 Sobic009G164900 Sobic009G164900 Sobic008G086200--Sobic009G164900 Sobic008G086200--Sobic010G118700
Octagon: transcription factors


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