Gene annotation
Transcriptome id Sobic.009G013700.1
Synonym Sb09g001350
Functional annotation pectinacetylesterase domain containing protein, expressed
UniProt C5YYJ4 , B3VTB2
Pfam PF03283
Panther DB PTHR21562 PTHR21562:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016787; hydrolase activity


Orthologs (automatic annotation)
TAIR AT3G09410 : Pectinacetylesterase family protein
RAP-DB (Rice) LOC_Os05g02120.1 : pectinacetylesterase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a025815 , Zm00025a038259
Brachypodium KQK07934
Barley HORVU1Hr1G005140.24
Wheat TraesCS3A02G533200 , TraesCS1D02G034900 , TraesCS1A02G033800 , TraesCS1B02G042000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G013700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G030300 RNA polymerase II-associated protein 3, putative, expressed -
2 Sobic.008G008400 F-box/LRR-repeat protein 3, putative, expressed -
3 Sobic.006G033700 wax synthase isoform 1, putative, expressed -
4 Sobic.010G242900 disease resistance protein RGA3, putative, expressed -
5 Sobic.001G215900 TKL_IRAK_DUF26-lf.4 - DUF26 kinases have homology to DUF26 containing loci, expressed -
6 Sobic.001G226000 WD domain, G-beta repeat domain containing protein, expressed K10599: PRPF19, pre-mRNA-processing factor 19
7 Sobic.003G347300 TBC domain containing protein, expressed -
8 Sobic.002G168600 nucleobase-ascorbate transporter, putative, expressed K14611: SLC23A1, solute carrier family 23 (nucleobase transporter), member 1
9 Sobic.002G218700 mitochondrial carrier protein, putative, expressed K15121: solute carrier family 25, member 44
10 Sobic.004G061900 Sad1 / UNC-like C-terminal domain containing protein, putative, expressed K19347: SUN domain-containing protein 1/2
11 Sobic.002G177400 expressed protein -
12 Sobic.004G134100 glycosyltransferase, putative, expressed -
13 Sobic.007G188900 AP2 domain containing protein, expressed -
14 Sobic.006G129700 amine oxidase, flavin-containing, domain containing protein, expressed K00231: PPOX, protoporphyrinogen/coproporphyrinogen III oxidase
15 Sobic.006G130501 - -
16 Sobic.010G211300 protein phosphatase 2C, putative, expressed K17499: PPM1G, protein phosphatase 1G
17 Sobic.001G366800 alpha-N-acetylglucosaminidase, putative, expressed K01205: alpha-N-acetylglucosaminidase
18 Sobic.004G067000 expressed protein -
19 Sobic.001G049600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@squalene synthetase, putative, expressed K00801: farnesyl-diphosphate farnesyltransferase
20 Sobic.010G199300 OsPOP14 - Putative Prolyl Oligopeptidase homologue, expressed -


Gene co-expression network
sample Sobic009G013700 Sobic009G013700 Sobic009G030300 Sobic009G030300 Sobic009G013700--Sobic009G030300 Sobic008G008400 Sobic008G008400 Sobic009G013700--Sobic008G008400 Sobic006G033700 Sobic006G033700 Sobic009G013700--Sobic006G033700 Sobic010G242900 Sobic010G242900 Sobic009G013700--Sobic010G242900 Sobic001G215900 Sobic001G215900 Sobic009G013700--Sobic001G215900 Sobic001G226000 Sobic001G226000 Sobic009G013700--Sobic001G226000 Sobic003G347300 Sobic003G347300 Sobic009G013700--Sobic003G347300 Sobic002G168600 Sobic002G168600 Sobic009G013700--Sobic002G168600 Sobic002G218700 Sobic002G218700 Sobic009G013700--Sobic002G218700 Sobic002G177400 Sobic002G177400 Sobic009G030300--Sobic002G177400 Sobic009G030300--Sobic001G226000 Sobic004G061900 Sobic004G061900 Sobic009G030300--Sobic004G061900 Sobic009G044900 Sobic009G044900 Sobic009G030300--Sobic009G044900 Sobic004G013600 Sobic004G013600 Sobic009G030300--Sobic004G013600 Sobic004G088400 Sobic004G088400 Sobic009G030300--Sobic004G088400 Sobic008G117200 Sobic008G117200 Sobic009G030300--Sobic008G117200 Sobic002G334600 Sobic002G334600 Sobic009G030300--Sobic002G334600 Sobic008G129700 Sobic008G129700 Sobic009G030300--Sobic008G129700 Sobic003G151300 Sobic003G151300 Sobic008G008400--Sobic003G151300 Sobic008G008400--Sobic009G013700 Sobic009G026200 Sobic009G026200 Sobic008G008400--Sobic009G026200 Sobic010G105701 Sobic010G105701 Sobic008G008400--Sobic010G105701 Sobic008G008400--Sobic009G030300 Sobic004G067000 Sobic004G067000 Sobic008G008400--Sobic004G067000 Sobic004G134100 Sobic004G134100 Sobic008G008400--Sobic004G134100 Sobic003G101300 Sobic003G101300 Sobic008G008400--Sobic003G101300 Sobic008G008400--Sobic003G347300 Sobic006G098200 Sobic006G098200 Sobic006G033700--Sobic006G098200 Sobic002G076400 Sobic002G076400 Sobic006G033700--Sobic002G076400 Sobic007G191100 Sobic007G191100 Sobic006G033700--Sobic007G191100 Sobic006G033700--Sobic009G013700 Sobic003G185200 Sobic003G185200 Sobic006G033700--Sobic003G185200 Sobic010G211300 Sobic010G211300 Sobic006G033700--Sobic010G211300 Sobic006G033700--Sobic009G030300 Sobic006G033700--Sobic002G177400 Sobic001G347600 Sobic001G347600 Sobic006G033700--Sobic001G347600 Sobic010G242900--Sobic001G215900 Sobic010G242900--Sobic004G134100 Sobic010G242900--Sobic002G168600 Sobic010G242900--Sobic009G013700 Sobic010G138500 Sobic010G138500 Sobic010G242900--Sobic010G138500 Sobic001G366800 Sobic001G366800 Sobic010G242900--Sobic001G366800 Sobic006G130501 Sobic006G130501 Sobic010G242900--Sobic006G130501 Sobic004G247300 Sobic004G247300 Sobic010G242900--Sobic004G247300 Sobic010G242900--Sobic006G098200 Sobic001G215900--Sobic010G242900 Sobic001G215900--Sobic001G366800 Sobic001G215900--Sobic002G168600 Sobic001G215900--Sobic010G138500 Sobic001G215900--Sobic004G134100 Sobic001G215900--Sobic004G247300 Sobic001G215900--Sobic006G130501 Sobic001G215900--Sobic009G013700 Sobic009G133900 Sobic009G133900 Sobic001G215900--Sobic009G133900 Sobic001G226000--Sobic009G030300 Sobic006G278700 Sobic006G278700 Sobic001G226000--Sobic006G278700 Sobic006G267300 Sobic006G267300 Sobic001G226000--Sobic006G267300 Sobic003G115100 Sobic003G115100 Sobic001G226000--Sobic003G115100 Sobic002G077900 Sobic002G077900 Sobic001G226000--Sobic002G077900 Sobic009G195200 Sobic009G195200 Sobic001G226000--Sobic009G195200 Sobic003G433500 Sobic003G433500 Sobic001G226000--Sobic003G433500 Sobic001G010600 Sobic001G010600 Sobic001G226000--Sobic001G010600 Sobic001G226000--Sobic004G013600 Sobic003G347300--Sobic002G218700 Sobic001G021500 Sobic001G021500 Sobic003G347300--Sobic001G021500 Sobic002G033700 Sobic002G033700 Sobic003G347300--Sobic002G033700 Sobic009G126000 Sobic009G126000 Sobic003G347300--Sobic009G126000 Sobic006G254500 Sobic006G254500 Sobic003G347300--Sobic006G254500 Sobic003G347300--Sobic009G030300 Sobic003G347300--Sobic009G013700 Sobic009G123500 Sobic009G123500 Sobic003G347300--Sobic009G123500 Sobic008G086200 Sobic008G086200 Sobic003G347300--Sobic008G086200 Sobic002G168600--Sobic010G242900 Sobic002G168600--Sobic001G215900 Sobic002G168600--Sobic004G134100 Sobic002G168600--Sobic006G130501 Sobic002G168600--Sobic009G013700 Sobic005G159600 Sobic005G159600 Sobic002G168600--Sobic005G159600 Sobic002G168600--Sobic004G247300 Sobic005G054700 Sobic005G054700 Sobic002G168600--Sobic005G054700 Sobic002G168600--Sobic008G086200 Sobic002G218700--Sobic003G347300 Sobic010G046400 Sobic010G046400 Sobic002G218700--Sobic010G046400 Sobic001G247200 Sobic001G247200 Sobic002G218700--Sobic001G247200 Sobic002G218700--Sobic009G030300 Sobic010G256000 Sobic010G256000 Sobic002G218700--Sobic010G256000 Sobic003G131200 Sobic003G131200 Sobic002G218700--Sobic003G131200 Sobic004G227500 Sobic004G227500 Sobic002G218700--Sobic004G227500 Sobic009G253400 Sobic009G253400 Sobic002G218700--Sobic009G253400 Sobic004G225700 Sobic004G225700 Sobic002G218700--Sobic004G225700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.