Gene annotation
Transcriptome id Sobic.001G361300.1
Synonym SORBIDRAFT_01g034520, Sb01g034520, SORBI_3001G361300
Functional annotation CDPK - calcium/calmodulin dependent serine/threonine protein kinase 1 (PubMedID : 31721651)
CAMK_CAMK_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
UniProt C5WYR4
Pfam PF06293
Panther DB PTHR24349 PTHR24349:SF157
NCBI CDD KOG0032; Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily
KEGG Orthology -
Gene Ontology GO:0016773; phosphotransferase activity, alcohol group as acceptor GO:0016020membrane GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT2G41140 : CDPK-related kinase 1
RAP-DB (Rice) LOC_Os03g25070.1 : CAMK_CAMK_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
MaizeGDB (Corn) Zm00025a048941 , Zm00025a052316 , Zm00025a013181 , Zm00025a002611 , Zm00025a015299 , Zm00025a015229
Brachypodium PNT74660 , KQK21574 , KQJ97410 , KQK14973
Barley HORVU5Hr1G006790.1 , HORVU6Hr1G016380.1 , HORVU5Hr1G097280.1 , HORVU5Hr1G097280.2 , HORVU1Hr1G005350.1 , HORVU1Hr1G005350.2 , HORVU1Hr1G005350.3 , HORVU1Hr1G005350.4 , HORVU2Hr1G025890.6 , HORVU2Hr1G025890.7 , HORVU2Hr1G025890.4 , HORVU2Hr1G025890.5 , HORVU2Hr1G025890.2 , HORVU2Hr1G025890.3 , HORVU2Hr1G025890.1 , HORVU2Hr1G025890.8 , HORVU2Hr1G025890.9 , HORVU2Hr1G025890.14 , HORVU2Hr1G025890.10 , HORVU2Hr1G025890.11 , HORVU2Hr1G025890.12 , HORVU2Hr1G025890.13 , HORVU6Hr1G064830.1 , HORVU7Hr1G066710.1 , HORVU7Hr1G066710.3 , HORVU7Hr1G066710.2
Wheat TraesCS2D02G150800 , TraesCS2B02G171600 , TraesCS2A02G146200 , TraesCS2A02G146200 , TraesCS7A02G384500
Populus PNT50249 , PNT50248 , PNT50247


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cDNA sequences
Sobic.001G361300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G165900 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
2 Sobic.004G316700 MYB family transcription factor, putative, expressed -
3 Sobic.006G261400 peptidase, trypsin-like serine and cysteine proteases, putative, expressed -
4 Sobic.006G250300 pelota, putative, expressed K06965: PELO, DOM34, protein pelota
5 Sobic.001G456300 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
6 Sobic.010G009800 OsFBX182 - F-box domain containing protein, expressed -
7 Sobic.004G286500 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
8 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
9 Sobic.001G051700 expressed protein -
10 Sobic.001G515000 protein-S-isoprenylcysteine O-methyltransferase. tax, putative, expressed K00587: ICMT, protein-S-isoprenylcysteine O-methyltransferase
11 Sobic.001G362200 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
12 Sobic.002G295500 expressed protein -
13 Sobic.004G131800 sirohydrochlorin ferrochelatase, putative, expressed -
14 Sobic.002G366400 histone deacetylase, putative, expressed K11407: histone deacetylase 6
15 Sobic.008G083200 transcription factor, putative, expressed K09060: plant G-box-binding factor
16 Sobic.001G015800 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
17 Sobic.009G164000 tentative name(PubMedID : 31536532)@cysteinyl-tRNA synthetase, putative, expressed K01883: CARS, cysteinyl-tRNA synthetase
18 Sobic.008G135200 importin subunit beta, putative, expressed K14293: KPNB1, importin subunit beta-1
19 Sobic.006G127600 signal peptide peptidase-like 2B, putative, expressed K09597: signal peptide peptidase-like 2B
20 Sobic.010G237900 RNA recognition motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G361300 Sobic001G361300 Sobic007G165900 Sobic007G165900 Sobic001G361300--Sobic007G165900 Sobic004G316700 Sobic004G316700 Sobic001G361300--Sobic004G316700 Sobic006G261400 Sobic006G261400 Sobic001G361300--Sobic006G261400 Sobic006G250300 Sobic006G250300 Sobic001G361300--Sobic006G250300 Sobic001G456300 Sobic001G456300 Sobic001G361300--Sobic001G456300 Sobic010G009800 Sobic010G009800 Sobic001G361300--Sobic010G009800 Sobic004G286500 Sobic004G286500 Sobic001G361300--Sobic004G286500 Sobic003G104000 Sobic003G104000 Sobic001G361300--Sobic003G104000 Sobic001G051700 Sobic001G051700 Sobic001G361300--Sobic001G051700 Sobic004G257100 Sobic004G257100 Sobic007G165900--Sobic004G257100 Sobic007G165900--Sobic006G261400 Sobic008G046500 Sobic008G046500 Sobic007G165900--Sobic008G046500 Sobic004G131800 Sobic004G131800 Sobic007G165900--Sobic004G131800 Sobic006G127600 Sobic006G127600 Sobic007G165900--Sobic006G127600 Sobic007G165900--Sobic001G361300 Sobic001G226700 Sobic001G226700 Sobic007G165900--Sobic001G226700 Sobic001G251100 Sobic001G251100 Sobic007G165900--Sobic001G251100 Sobic007G165900--Sobic010G009800 Sobic009G131900 Sobic009G131900 Sobic004G316700--Sobic009G131900 Sobic006G131000 Sobic006G131000 Sobic004G316700--Sobic006G131000 Sobic004G316700--Sobic004G286500 Sobic003G119700 Sobic003G119700 Sobic004G316700--Sobic003G119700 Sobic003G150100 Sobic003G150100 Sobic004G316700--Sobic003G150100 Sobic006G174850 Sobic006G174850 Sobic004G316700--Sobic006G174850 Sobic004G316700--Sobic008G046500 Sobic002G117400 Sobic002G117400 Sobic004G316700--Sobic002G117400 Sobic004G323700 Sobic004G323700 Sobic004G316700--Sobic004G323700 Sobic003G379200 Sobic003G379200 Sobic006G261400--Sobic003G379200 Sobic006G261400--Sobic006G127600 Sobic006G267600 Sobic006G267600 Sobic006G261400--Sobic006G267600 Sobic006G261400--Sobic003G104000 Sobic010G000800 Sobic010G000800 Sobic006G261400--Sobic010G000800 Sobic002G048700 Sobic002G048700 Sobic006G261400--Sobic002G048700 Sobic006G261400--Sobic001G051700 Sobic004G131300 Sobic004G131300 Sobic006G261400--Sobic004G131300 Sobic003G296900 Sobic003G296900 Sobic006G261400--Sobic003G296900 Sobic001G178300 Sobic001G178300 Sobic006G250300--Sobic001G178300 Sobic006G250300--Sobic001G456300 Sobic006G056700 Sobic006G056700 Sobic006G250300--Sobic006G056700 Sobic001G542450 Sobic001G542450 Sobic006G250300--Sobic001G542450 Sobic002G371300 Sobic002G371300 Sobic006G250300--Sobic002G371300 Sobic009G164000 Sobic009G164000 Sobic006G250300--Sobic009G164000 Sobic003G046300 Sobic003G046300 Sobic006G250300--Sobic003G046300 Sobic001G430400 Sobic001G430400 Sobic006G250300--Sobic001G430400 Sobic004G353000 Sobic004G353000 Sobic006G250300--Sobic004G353000 Sobic005G100700 Sobic005G100700 Sobic001G456300--Sobic005G100700 Sobic003G360400 Sobic003G360400 Sobic001G456300--Sobic003G360400 Sobic001G456300--Sobic006G056700 Sobic007G183900 Sobic007G183900 Sobic001G456300--Sobic007G183900 Sobic006G118700 Sobic006G118700 Sobic001G456300--Sobic006G118700 Sobic010G112100 Sobic010G112100 Sobic001G456300--Sobic010G112100 Sobic001G063700 Sobic001G063700 Sobic001G456300--Sobic001G063700 Sobic001G461400 Sobic001G461400 Sobic001G456300--Sobic001G461400 Sobic001G025000 Sobic001G025000 Sobic001G456300--Sobic001G025000 Sobic010G009800--Sobic007G165900 Sobic010G009800--Sobic003G379200 Sobic010G009800--Sobic003G104000 Sobic010G009800--Sobic006G261400 Sobic001G395100 Sobic001G395100 Sobic010G009800--Sobic001G395100 Sobic002G052700 Sobic002G052700 Sobic010G009800--Sobic002G052700 Sobic001G515000 Sobic001G515000 Sobic010G009800--Sobic001G515000 Sobic001G096000 Sobic001G096000 Sobic010G009800--Sobic001G096000 Sobic008G124900 Sobic008G124900 Sobic010G009800--Sobic008G124900 Sobic004G286500--Sobic001G515000 Sobic004G286500--Sobic008G046500 Sobic006G163800 Sobic006G163800 Sobic004G286500--Sobic006G163800 Sobic003G187200 Sobic003G187200 Sobic004G286500--Sobic003G187200 Sobic010G053800 Sobic010G053800 Sobic004G286500--Sobic010G053800 Sobic001G143500 Sobic001G143500 Sobic004G286500--Sobic001G143500 Sobic007G027700 Sobic007G027700 Sobic004G286500--Sobic007G027700 Sobic006G012500 Sobic006G012500 Sobic004G286500--Sobic006G012500 Sobic001G094900 Sobic001G094900 Sobic004G286500--Sobic001G094900 Sobic003G337300 Sobic003G337300 Sobic003G104000--Sobic003G337300 Sobic002G256700 Sobic002G256700 Sobic003G104000--Sobic002G256700 Sobic006G126100 Sobic006G126100 Sobic003G104000--Sobic006G126100 Sobic003G104000--Sobic001G251100 Sobic002G142900 Sobic002G142900 Sobic003G104000--Sobic002G142900 Sobic002G295500 Sobic002G295500 Sobic003G104000--Sobic002G295500 Sobic004G277200 Sobic004G277200 Sobic003G104000--Sobic004G277200 Sobic003G104000--Sobic004G131300 Sobic003G104000--Sobic006G261400 Sobic003G416700 Sobic003G416700 Sobic001G051700--Sobic003G416700 Sobic002G145800 Sobic002G145800 Sobic001G051700--Sobic002G145800 Sobic001G051700--Sobic006G267600 Sobic002G154000 Sobic002G154000 Sobic001G051700--Sobic002G154000 Sobic001G051700--Sobic006G261400 Sobic006G224800 Sobic006G224800 Sobic001G051700--Sobic006G224800 Sobic007G183300 Sobic007G183300 Sobic001G051700--Sobic007G183300 Sobic010G275500 Sobic010G275500 Sobic001G051700--Sobic010G275500 Sobic003G062300 Sobic003G062300 Sobic001G051700--Sobic003G062300
Octagon: transcription factors


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