Gene annotation
Transcriptome id Sobic.009G188800.1
Synonym Sb09g024770, HLM1, CNGC4, ATCNGC4, DND2
Functional annotation cyclic nucleotide-gated ion channel 2, putative, expressed
UniProt A0A1B6P9N4
Pfam PF00027 PF00520
Panther DB PTHR10217 PTHR10217:SF532
NCBI CDD KOG0498; K+-channel ERG and related proteins, contain PAS/PAC sensor domain
KEGG Orthology K05391; cyclic nucleotide gated channel, plant
Gene Ontology GO:0016020; membrane GO:0006811ion transport GO:0005216ion channel activity


Orthologs (automatic annotation)
TAIR AT5G54250 : cyclic nucleotide-gated cation channel 4
RAP-DB (Rice) LOC_Os05g42250.1 : cyclic nucleotide-gated ion channel 2, putative, expressed
MaizeGDB (Corn) Zm00025a039884 , Zm00025a016769 , Zm00025a044143 , Zm00025a008228
Brachypodium PNT72987 , KQK05541 , KQK05540 , KQK10082
Barley HORVU1Hr1G066020.1 , HORVU3Hr1G076940.15 , HORVU3Hr1G076940.14 , HORVU3Hr1G076940.11 , HORVU3Hr1G076940.10 , HORVU3Hr1G076940.13 , HORVU3Hr1G076940.12 , HORVU3Hr1G076940.1 , HORVU3Hr1G076940.2 , HORVU3Hr1G076940.5 , HORVU3Hr1G076940.6 , HORVU1Hr1G065990.4 , HORVU0Hr1G027310.1 , HORVU0Hr1G027310.5 , HORVU1Hr1G065990.1 , HORVU1Hr1G065990.2 , HORVU1Hr1G065990.3 , HORVU0Hr1G027310.4 , HORVU5Hr1G096440.4 , HORVU5Hr1G096440.1 , HORVU5Hr1G096440.2 , HORVU5Hr1G096440.3 , HORVU3Hr1G076940.9 , HORVU3Hr1G076940.8 , HORVU3Hr1G076940.3
Wheat TraesCS3A02G316300 , TraesCS5A02G395300 , TraesCS5A02G395300 , TraesCS3B02G350500 , TraesCS1D02G322000 , TraesCS7B02G161600 , TraesCS3D02G315000 , TraesCS1A02G321700 , TraesCS1B02G334100 , TraesCS5B02G400100 , TraesCS5B02G400100 , TraesCS5D02G404600 , TraesCS5D02G404600
Populus -


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cDNA sequences
Sobic.009G188800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G262600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
2 Sobic.001G139300 expressed protein -
3 Sobic.002G321600 - -
4 Sobic.005G115800 cytochrome P450, putative, expressed -
5 Sobic.003G223900 extra-large G-protein-related, putative, expressed -
6 Sobic.003G361300 "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed K13946: AUX1, auxin influx carrier (AUX1 LAX family)
7 Sobic.003G399000 expressed protein -
8 Sobic.004G331300 AP2 domain containing protein, expressed -
9 Sobic.002G192101 - -
10 Sobic.005G060766 - -
11 Sobic.001G159850 - -
12 Sobic.001G159850 - -
13 Sobic.001G159850 - -
14 Sobic.001G159850 - -
15 Sobic.001G159850 - -
16 Sobic.001G159850 - -
17 Sobic.001G159850 - -
18 Sobic.001G159850 - -
19 Sobic.001G159850 - -
20 Sobic.001G159850 - -


Gene co-expression network
sample Sobic009G188800 Sobic009G188800 Sobic004G262600 Sobic004G262600 Sobic009G188800--Sobic004G262600 Sobic001G139300 Sobic001G139300 Sobic009G188800--Sobic001G139300 Sobic002G321600 Sobic002G321600 Sobic009G188800--Sobic002G321600 Sobic005G115800 Sobic005G115800 Sobic009G188800--Sobic005G115800 Sobic003G223900 Sobic003G223900 Sobic009G188800--Sobic003G223900 Sobic003G361300 Sobic003G361300 Sobic009G188800--Sobic003G361300 Sobic003G399000 Sobic003G399000 Sobic009G188800--Sobic003G399000 Sobic004G331300 Sobic004G331300 Sobic009G188800--Sobic004G331300 Sobic002G192101 Sobic002G192101 Sobic009G188800--Sobic002G192101 Sobic003G410700 Sobic003G410700 Sobic004G262600--Sobic003G410700 Sobic004G262600--Sobic003G223900 Sobic004G261200 Sobic004G261200 Sobic004G262600--Sobic004G261200 Sobic004G262600--Sobic009G188800 Sobic004G262600--Sobic003G399000 Sobic009G194200 Sobic009G194200 Sobic004G262600--Sobic009G194200 Sobic001G217300 Sobic001G217300 Sobic004G262600--Sobic001G217300 Sobic004G262600--Sobic001G139300 Sobic003G017200 Sobic003G017200 Sobic004G262600--Sobic003G017200 Sobic001G139300--Sobic003G410700 Sobic001G139300--Sobic003G223900 Sobic001G139300--Sobic004G262600 Sobic001G139300--Sobic009G188800 Sobic004G218900 Sobic004G218900 Sobic001G139300--Sobic004G218900 Sobic004G234300 Sobic004G234300 Sobic001G139300--Sobic004G234300 Sobic001G312600 Sobic001G312600 Sobic001G139300--Sobic001G312600 Sobic002G206700 Sobic002G206700 Sobic001G139300--Sobic002G206700 Sobic003G390700 Sobic003G390700 Sobic001G139300--Sobic003G390700 Sobic007G166900 Sobic007G166900 Sobic002G321600--Sobic007G166900 Sobic010G006700 Sobic010G006700 Sobic002G321600--Sobic010G006700 Sobic004G310600 Sobic004G310600 Sobic002G321600--Sobic004G310600 Sobic002G321600--Sobic004G331300 Sobic001G159850 Sobic001G159850 Sobic002G321600--Sobic001G159850 Sobic005G115800--Sobic007G166900 Sobic005G115800--Sobic010G006700 Sobic005G115800--Sobic004G310600 Sobic005G115800--Sobic001G159850 Sobic003G223900--Sobic004G262600 Sobic003G223900--Sobic004G234300 Sobic002G270800 Sobic002G270800 Sobic003G223900--Sobic002G270800 Sobic003G223900--Sobic003G410700 Sobic003G223900--Sobic001G139300 Sobic004G336100 Sobic004G336100 Sobic003G223900--Sobic004G336100 Sobic003G223900--Sobic001G217300 Sobic003G223900--Sobic003G017200 Sobic002G257900 Sobic002G257900 Sobic003G223900--Sobic002G257900 Sobic001G450800 Sobic001G450800 Sobic003G361300--Sobic001G450800 Sobic001G430700 Sobic001G430700 Sobic003G361300--Sobic001G430700 Sobic003G198150 Sobic003G198150 Sobic003G361300--Sobic003G198150 Sobic008G044750 Sobic008G044750 Sobic003G361300--Sobic008G044750 Sobic003G227600 Sobic003G227600 Sobic003G361300--Sobic003G227600 Sobic003G040800 Sobic003G040800 Sobic003G361300--Sobic003G040800 Sobic009G216900 Sobic009G216900 Sobic003G361300--Sobic009G216900 Sobic003G233900 Sobic003G233900 Sobic003G361300--Sobic003G233900 Sobic009G128300 Sobic009G128300 Sobic003G361300--Sobic009G128300 Sobic003G399000--Sobic004G262600 Sobic004G204400 Sobic004G204400 Sobic003G399000--Sobic004G204400 Sobic009G159900 Sobic009G159900 Sobic003G399000--Sobic009G159900 Sobic001G537300 Sobic001G537300 Sobic003G399000--Sobic001G537300 Sobic009G121750 Sobic009G121750 Sobic003G399000--Sobic009G121750 Sobic004G053300 Sobic004G053300 Sobic003G399000--Sobic004G053300 Sobic003G399000--Sobic003G361300 Sobic003G399000--Sobic001G217300 Sobic001G316900 Sobic001G316900 Sobic003G399000--Sobic001G316900 Sobic004G331300--Sobic001G159850 Sobic001G109100 Sobic001G109100 Sobic002G192101--Sobic001G109100 Sobic004G337500 Sobic004G337500 Sobic002G192101--Sobic004G337500 Sobic001G145100 Sobic001G145100 Sobic002G192101--Sobic001G145100 Sobic002G192101--Sobic009G188800 Sobic010G076500 Sobic010G076500 Sobic002G192101--Sobic010G076500 Sobic001G095750 Sobic001G095750 Sobic002G192101--Sobic001G095750 Sobic004G275100 Sobic004G275100 Sobic002G192101--Sobic004G275100 Sobic001G044800 Sobic001G044800 Sobic002G192101--Sobic001G044800 Sobic008G166700 Sobic008G166700 Sobic002G192101--Sobic008G166700
Octagon: transcription factors


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