Gene annotation
Transcriptome id Sobic.002G192101.1
Synonym -
Functional annotation -
UniProt A0A1W0W4Y7
Pfam PF04564
Panther DB PTHR23315 PTHR23315:SF79
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT5G62560 : RING/U-box superfamily protein with ARM repeat domain
RAP-DB (Rice) LOC_Os09g21740.1 : armadillo/beta-catenin repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a013850 , Zm00025a046850
Brachypodium KQJ90118
Barley HORVU5Hr1G096940.12 , HORVU4Hr1G008170.2 , HORVU4Hr1G008170.3 , HORVU4Hr1G008170.1 , HORVU4Hr1G008170.4 , HORVU7Hr1G108260.4 , HORVU7Hr1G108260.2 , HORVU7Hr1G108260.3 , HORVU7Hr1G108260.1 , HORVU6Hr1G091220.1 , HORVU5Hr1G059910.1 , HORVU6Hr1G043090.2 , HORVU6Hr1G043090.1 , HORVU3Hr1G017250.1 , HORVU3Hr1G017250.2 , HORVU4Hr1G082630.3 , HORVU4Hr1G082630.2 , HORVU4Hr1G082630.1 , HORVU5Hr1G096940.13
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G109100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GRAS family transcription factor domain containing protein, expressed -
2 Sobic.004G337500 GATA zinc finger domain containing protein, expressed -
3 Sobic.001G145100 RIO1 family protein, expressed K08818: cell division cycle 2-like
4 Sobic.009G188800 cyclic nucleotide-gated ion channel 2, putative, expressed K05391: cyclic nucleotide gated channel, plant
5 Sobic.010G076500 - -
6 Sobic.001G095750 - -
7 Sobic.004G275100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.001G044800 uncharacterized glycosyltransferase, putative, expressed K06617: raffinose synthase
9 Sobic.008G166700 cysteine-rich receptor-like protein kinase 7 precursor, putative, expressed -
10 Sobic.001G430700 expressed protein -
11 Sobic.005G024100 rhamnogalacturonate lyase, putative, expressed -
12 Sobic.001G314300 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
13 Sobic.001G344000 DUF581 domain containing protein, expressed -
14 Sobic.003G131500 VQ domain containing protein, putative, expressed -
15 Sobic.004G276700 expressed protein -
16 Sobic.005G090600 peptide transporter PTR2, putative, expressed -
17 Sobic.009G169900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glutaredoxin, putative, expressed K17479: glutaredoxin domain-containing cysteine-rich protein 1
18 Sobic.003G423200 NAM, putative, expressed -
19 Sobic.003G198400 - -
20 Sobic.001G030600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytokinin-N-glucosyltransferase 1, putative, expressed -


Gene co-expression network
sample Sobic002G192101 Sobic002G192101 Sobic001G109100 Sobic001G109100 Sobic002G192101--Sobic001G109100 Sobic004G337500 Sobic004G337500 Sobic002G192101--Sobic004G337500 Sobic001G145100 Sobic001G145100 Sobic002G192101--Sobic001G145100 Sobic009G188800 Sobic009G188800 Sobic002G192101--Sobic009G188800 Sobic010G076500 Sobic010G076500 Sobic002G192101--Sobic010G076500 Sobic001G095750 Sobic001G095750 Sobic002G192101--Sobic001G095750 Sobic004G275100 Sobic004G275100 Sobic002G192101--Sobic004G275100 Sobic001G044800 Sobic001G044800 Sobic002G192101--Sobic001G044800 Sobic008G166700 Sobic008G166700 Sobic002G192101--Sobic008G166700 Sobic001G109100--Sobic004G337500 Sobic001G109100--Sobic002G192101 Sobic004G283400 Sobic004G283400 Sobic001G109100--Sobic004G283400 Sobic001G109100--Sobic008G166700 Sobic005G090600 Sobic005G090600 Sobic001G109100--Sobic005G090600 Sobic007G136700 Sobic007G136700 Sobic001G109100--Sobic007G136700 Sobic001G109100--Sobic001G044800 Sobic004G281300 Sobic004G281300 Sobic001G109100--Sobic004G281300 Sobic008G059400 Sobic008G059400 Sobic001G109100--Sobic008G059400 Sobic003G423300 Sobic003G423300 Sobic004G337500--Sobic003G423300 Sobic004G337500--Sobic001G109100 Sobic004G337500--Sobic001G095750 Sobic004G337500--Sobic004G281300 Sobic001G430700 Sobic001G430700 Sobic004G337500--Sobic001G430700 Sobic001G450800 Sobic001G450800 Sobic004G337500--Sobic001G450800 Sobic002G009900 Sobic002G009900 Sobic004G337500--Sobic002G009900 Sobic004G337500--Sobic001G145100 Sobic003G361300 Sobic003G361300 Sobic004G337500--Sobic003G361300 Sobic003G017200 Sobic003G017200 Sobic001G145100--Sobic003G017200 Sobic007G153001 Sobic007G153001 Sobic001G145100--Sobic007G153001 Sobic001G106000 Sobic001G106000 Sobic001G145100--Sobic001G106000 Sobic001G106200 Sobic001G106200 Sobic001G145100--Sobic001G106200 Sobic002G023900 Sobic002G023900 Sobic001G145100--Sobic002G023900 Sobic006G200200 Sobic006G200200 Sobic001G145100--Sobic006G200200 Sobic003G040800 Sobic003G040800 Sobic001G145100--Sobic003G040800 Sobic006G078350 Sobic006G078350 Sobic001G145100--Sobic006G078350 Sobic003G144200 Sobic003G144200 Sobic001G145100--Sobic003G144200 Sobic004G262600 Sobic004G262600 Sobic009G188800--Sobic004G262600 Sobic001G139300 Sobic001G139300 Sobic009G188800--Sobic001G139300 Sobic002G321600 Sobic002G321600 Sobic009G188800--Sobic002G321600 Sobic005G115800 Sobic005G115800 Sobic009G188800--Sobic005G115800 Sobic003G223900 Sobic003G223900 Sobic009G188800--Sobic003G223900 Sobic009G188800--Sobic003G361300 Sobic003G399000 Sobic003G399000 Sobic009G188800--Sobic003G399000 Sobic004G331300 Sobic004G331300 Sobic009G188800--Sobic004G331300 Sobic009G188800--Sobic002G192101 Sobic010G076500--Sobic001G095750 Sobic004G227400 Sobic004G227400 Sobic010G076500--Sobic004G227400 Sobic002G189000 Sobic002G189000 Sobic010G076500--Sobic002G189000 Sobic010G085400 Sobic010G085400 Sobic010G076500--Sobic010G085400 Sobic002G013900 Sobic002G013900 Sobic010G076500--Sobic002G013900 Sobic002G182800 Sobic002G182800 Sobic010G076500--Sobic002G182800 Sobic003G233900 Sobic003G233900 Sobic010G076500--Sobic003G233900 Sobic003G131500 Sobic003G131500 Sobic010G076500--Sobic003G131500 Sobic005G087800 Sobic005G087800 Sobic010G076500--Sobic005G087800 Sobic001G118900 Sobic001G118900 Sobic001G095750--Sobic001G118900 Sobic001G095750--Sobic003G131500 Sobic001G095750--Sobic002G189000 Sobic001G314300 Sobic001G314300 Sobic001G095750--Sobic001G314300 Sobic002G137800 Sobic002G137800 Sobic001G095750--Sobic002G137800 Sobic006G114200 Sobic006G114200 Sobic001G095750--Sobic006G114200 Sobic003G234800 Sobic003G234800 Sobic001G095750--Sobic003G234800 Sobic001G095750--Sobic005G087800 Sobic001G161200 Sobic001G161200 Sobic001G095750--Sobic001G161200 Sobic003G016400 Sobic003G016400 Sobic004G275100--Sobic003G016400 Sobic007G139900 Sobic007G139900 Sobic004G275100--Sobic007G139900 Sobic004G275100--Sobic001G109100 Sobic009G010400 Sobic009G010400 Sobic004G275100--Sobic009G010400 Sobic002G349400 Sobic002G349400 Sobic004G275100--Sobic002G349400 Sobic002G175900 Sobic002G175900 Sobic004G275100--Sobic002G175900 Sobic001G315800 Sobic001G315800 Sobic004G275100--Sobic001G315800 Sobic007G224300 Sobic007G224300 Sobic004G275100--Sobic007G224300 Sobic004G018400 Sobic004G018400 Sobic004G275100--Sobic004G018400 Sobic007G183100 Sobic007G183100 Sobic001G044800--Sobic007G183100 Sobic003G184765 Sobic003G184765 Sobic001G044800--Sobic003G184765 Sobic005G218500 Sobic005G218500 Sobic001G044800--Sobic005G218500 Sobic002G160600 Sobic002G160600 Sobic001G044800--Sobic002G160600 Sobic003G423200 Sobic003G423200 Sobic001G044800--Sobic003G423200 Sobic003G109832 Sobic003G109832 Sobic001G044800--Sobic003G109832 Sobic001G044800--Sobic001G314300 Sobic003G248901 Sobic003G248901 Sobic001G044800--Sobic003G248901 Sobic010G214200 Sobic010G214200 Sobic001G044800--Sobic010G214200 Sobic008G166700--Sobic001G109100 Sobic008G166700--Sobic003G423300 Sobic008G166700--Sobic006G114200 Sobic003G409300 Sobic003G409300 Sobic008G166700--Sobic003G409300 Sobic001G140200 Sobic001G140200 Sobic008G166700--Sobic001G140200 Sobic008G065800 Sobic008G065800 Sobic008G166700--Sobic008G065800 Sobic002G216400 Sobic002G216400 Sobic008G166700--Sobic002G216400 Sobic008G109100 Sobic008G109100 Sobic008G166700--Sobic008G109100 Sobic008G166700--Sobic001G095750
Octagon: transcription factors


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