Gene annotation
Transcriptome id Sobic.004G276700.1
Synonym Sb04g031370
Functional annotation expressed protein
UniProt C5Y0T2
Pfam PF05340
Panther DB PTHR31659 PTHR31659:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G44600 : -
RAP-DB (Rice) LOC_Os02g46420.1 : transposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a010020 , Zm00025a021577 , Zm00025a032362
Brachypodium PNT69254
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G276700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G353400 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
2 Sobic.010G102000 U-box protein CMPG1, putative, expressed -
3 Sobic.007G145700 expressed protein -
4 Sobic.001G192800 AAA-type ATPase family protein, putative, expressed -
5 Sobic.003G341100 WRKY24, expressed K13424: WRKY transcription factor 33
6 Sobic.001G410100 CGMC_MAPKCGMC_2_ERK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
7 Sobic.009G044400 1-aminocyclopropane-1-carboxylate oxidase, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
8 Sobic.003G425200 Calmodulin-like protein 1(PubMedID : 24906815)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calmodulin-like protein 1, putative, expressed K13448: calcium-binding protein CML
9 Sobic.002G341900 - -
10 Sobic.004G086800 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
11 Sobic.003G352400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@C2 domain containing protein, putative, expressed -
12 Sobic.009G204100 expressed protein -
13 Sobic.001G314700 uncharacterized Cys-rich domain containing protein, putative, expressed -
14 Sobic.009G217500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.18 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
15 Sobic.001G287600 transcription factor MYC7E, putative, expressed K13422: transcription factor MYC2
16 Sobic.001G064900 syntaxin, putative, expressed K08486: syntaxin 1B/2/3
17 Sobic.006G259000 AP2 domain containing protein, expressed K09286: EREBP-like factor
18 Sobic.002G294600 aspartic proteinase nepenthesin precursor, putative, expressed -
19 Sobic.001G196900 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@CPuORF40 - conserved peptide uORF-containing transcript, expressed K14488: SAUR family protein
20 Sobic.004G305000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55


Gene co-expression network
sample Sobic004G276700 Sobic004G276700 Sobic002G353400 Sobic002G353400 Sobic004G276700--Sobic002G353400 Sobic010G102000 Sobic010G102000 Sobic004G276700--Sobic010G102000 Sobic007G145700 Sobic007G145700 Sobic004G276700--Sobic007G145700 Sobic001G192800 Sobic001G192800 Sobic004G276700--Sobic001G192800 Sobic003G341100 Sobic003G341100 Sobic004G276700--Sobic003G341100 Sobic001G410100 Sobic001G410100 Sobic004G276700--Sobic001G410100 Sobic009G044400 Sobic009G044400 Sobic004G276700--Sobic009G044400 Sobic003G425200 Sobic003G425200 Sobic004G276700--Sobic003G425200 Sobic002G341900 Sobic002G341900 Sobic004G276700--Sobic002G341900 Sobic002G374100 Sobic002G374100 Sobic002G353400--Sobic002G374100 Sobic002G343500 Sobic002G343500 Sobic002G353400--Sobic002G343500 Sobic007G188100 Sobic007G188100 Sobic002G353400--Sobic007G188100 Sobic001G341600 Sobic001G341600 Sobic002G353400--Sobic001G341600 Sobic001G516600 Sobic001G516600 Sobic002G353400--Sobic001G516600 Sobic009G217600 Sobic009G217600 Sobic002G353400--Sobic009G217600 Sobic001G525400 Sobic001G525400 Sobic002G353400--Sobic001G525400 Sobic002G294700 Sobic002G294700 Sobic002G353400--Sobic002G294700 Sobic009G027900 Sobic009G027900 Sobic002G353400--Sobic009G027900 Sobic009G217500 Sobic009G217500 Sobic010G102000--Sobic009G217500 Sobic010G105300 Sobic010G105300 Sobic010G102000--Sobic010G105300 Sobic010G102000--Sobic003G341100 Sobic002G232800 Sobic002G232800 Sobic010G102000--Sobic002G232800 Sobic001G064900 Sobic001G064900 Sobic010G102000--Sobic001G064900 Sobic010G102000--Sobic007G145700 Sobic010G023200 Sobic010G023200 Sobic010G102000--Sobic010G023200 Sobic007G077100 Sobic007G077100 Sobic010G102000--Sobic007G077100 Sobic006G273800 Sobic006G273800 Sobic010G102000--Sobic006G273800 Sobic007G145700--Sobic003G341100 Sobic002G294600 Sobic002G294600 Sobic007G145700--Sobic002G294600 Sobic007G145700--Sobic010G102000 Sobic001G462800 Sobic001G462800 Sobic007G145700--Sobic001G462800 Sobic006G146500 Sobic006G146500 Sobic007G145700--Sobic006G146500 Sobic007G145700--Sobic009G217500 Sobic001G095700 Sobic001G095700 Sobic007G145700--Sobic001G095700 Sobic007G145700--Sobic009G044400 Sobic007G145700--Sobic006G273800 Sobic001G196900 Sobic001G196900 Sobic001G192800--Sobic001G196900 Sobic001G192800--Sobic009G217600 Sobic001G035000 Sobic001G035000 Sobic001G192800--Sobic001G035000 Sobic001G192800--Sobic009G217500 Sobic001G192800--Sobic003G341100 Sobic003G361100 Sobic003G361100 Sobic001G192800--Sobic003G361100 Sobic001G192800--Sobic006G273800 Sobic006G184400 Sobic006G184400 Sobic001G192800--Sobic006G184400 Sobic001G192800--Sobic001G341600 Sobic003G341100--Sobic009G217500 Sobic003G341100--Sobic007G145700 Sobic003G341100--Sobic009G044400 Sobic003G341100--Sobic007G077100 Sobic003G341100--Sobic010G102000 Sobic003G341100--Sobic001G341600 Sobic003G341100--Sobic006G273800 Sobic003G341100--Sobic010G023200 Sobic002G118600 Sobic002G118600 Sobic003G341100--Sobic002G118600 Sobic001G287600 Sobic001G287600 Sobic001G410100--Sobic001G287600 Sobic002G207300 Sobic002G207300 Sobic001G410100--Sobic002G207300 Sobic001G410100--Sobic003G341100 Sobic007G011000 Sobic007G011000 Sobic001G410100--Sobic007G011000 Sobic009G100500 Sobic009G100500 Sobic001G410100--Sobic009G100500 Sobic001G410100--Sobic002G118600 Sobic001G410100--Sobic009G044400 Sobic007G212200 Sobic007G212200 Sobic001G410100--Sobic007G212200 Sobic004G065900 Sobic004G065900 Sobic001G410100--Sobic004G065900 Sobic009G044400--Sobic003G341100 Sobic006G078400 Sobic006G078400 Sobic009G044400--Sobic006G078400 Sobic009G044400--Sobic009G217500 Sobic009G044400--Sobic007G145700 Sobic009G044400--Sobic006G273800 Sobic009G044400--Sobic001G341600 Sobic009G044400--Sobic001G035000 Sobic009G044400--Sobic003G361100 Sobic009G044400--Sobic001G192800 Sobic003G425200--Sobic006G146500 Sobic003G425200--Sobic003G341100 Sobic007G201100 Sobic007G201100 Sobic003G425200--Sobic007G201100 Sobic003G425200--Sobic002G207300 Sobic003G425200--Sobic007G011000 Sobic003G425200--Sobic004G065900 Sobic001G370600 Sobic001G370600 Sobic003G425200--Sobic001G370600 Sobic003G425200--Sobic007G145700 Sobic003G425200--Sobic002G118600 Sobic007G143400 Sobic007G143400 Sobic002G341900--Sobic007G143400 Sobic002G341900--Sobic007G145700 Sobic002G341900--Sobic010G102000 Sobic002G341900--Sobic001G064900 Sobic002G341900--Sobic002G294600 Sobic001G489500 Sobic001G489500 Sobic002G341900--Sobic001G489500 Sobic002G341900--Sobic001G095700 Sobic002G341900--Sobic006G273800 Sobic002G341900--Sobic009G217500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.