Gene annotation
Transcriptome id Sobic.003G131500.1
Synonym Sb03g011200, ATCAMBP25, CAMBP25
Functional annotation VQ domain containing protein, putative, expressed
UniProt A0A1B6Q326
Pfam PF05678
Panther DB PTHR33179 PTHR33179:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G56880 : VQ motif-containing protein
RAP-DB (Rice) LOC_Os01g17050.1 : VQ domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a024140
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G131500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G462800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
2 Sobic.010G272101 - -
3 Sobic.001G095750 - -
4 Sobic.010G016500 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@ Relatively high abundance in cold tolerant sorghum under cold stress(PubMedID : 26645959)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@key regulator in cold signaling pathway (Arabidopsis)(PubMedID : 16244905)@dehydration-responsive element-binding protein, putative, expressed -
5 Sobic.001G081600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
6 Sobic.002G182800 expressed protein -
7 Sobic.006G203000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
8 Sobic.009G128300 CUE domain containing protein, expressed -
9 Sobic.004G244300 formin-like protein 3 precursor, putative, expressed -
10 Sobic.002G189000 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
11 Sobic.004G281200 chitin-inducible gibberellin-responsive protein 2, putative, expressed -
12 Sobic.001G075101 - -
13 Sobic.006G078350 - -
14 Sobic.006G078300 - -
15 Sobic.001G118900 DUF292 domain containing protein, expressed -
16 Sobic.002G037400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed K09840: 9-cis-epoxycarotenoid dioxygenase
17 Sobic.001G075800 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
18 Sobic.007G169600 L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
19 Sobic.004G176900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.9 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
20 Sobic.010G233400 Protein dihydroflavonol-4-reductase DFR (Os)(PubMedID : 27208977)@dihydroflavonol-4-reductase, putative, expressed -


Gene co-expression network
sample Sobic003G131500 Sobic003G131500 Sobic001G462800 Sobic001G462800 Sobic003G131500--Sobic001G462800 Sobic010G272101 Sobic010G272101 Sobic003G131500--Sobic010G272101 Sobic001G095750 Sobic001G095750 Sobic003G131500--Sobic001G095750 Sobic010G016500 Sobic010G016500 Sobic003G131500--Sobic010G016500 Sobic001G081600 Sobic001G081600 Sobic003G131500--Sobic001G081600 Sobic002G182800 Sobic002G182800 Sobic003G131500--Sobic002G182800 Sobic006G203000 Sobic006G203000 Sobic003G131500--Sobic006G203000 Sobic009G128300 Sobic009G128300 Sobic003G131500--Sobic009G128300 Sobic004G244300 Sobic004G244300 Sobic003G131500--Sobic004G244300 Sobic001G462800--Sobic001G081600 Sobic002G217100 Sobic002G217100 Sobic001G462800--Sobic002G217100 Sobic002G294600 Sobic002G294600 Sobic001G462800--Sobic002G294600 Sobic002G197600 Sobic002G197600 Sobic001G462800--Sobic002G197600 Sobic002G344700 Sobic002G344700 Sobic001G462800--Sobic002G344700 Sobic002G367900 Sobic002G367900 Sobic001G462800--Sobic002G367900 Sobic006G210300 Sobic006G210300 Sobic001G462800--Sobic006G210300 Sobic007G145700 Sobic007G145700 Sobic001G462800--Sobic007G145700 Sobic004G281200 Sobic004G281200 Sobic001G462800--Sobic004G281200 Sobic010G272101--Sobic001G081600 Sobic010G272101--Sobic003G131500 Sobic010G272101--Sobic002G217100 Sobic002G068800 Sobic002G068800 Sobic010G272101--Sobic002G068800 Sobic001G063600 Sobic001G063600 Sobic010G272101--Sobic001G063600 Sobic006G032200 Sobic006G032200 Sobic010G272101--Sobic006G032200 Sobic001G050800 Sobic001G050800 Sobic010G272101--Sobic001G050800 Sobic010G272101--Sobic010G016500 Sobic010G272101--Sobic004G244300 Sobic001G118900 Sobic001G118900 Sobic001G095750--Sobic001G118900 Sobic001G095750--Sobic003G131500 Sobic002G189000 Sobic002G189000 Sobic001G095750--Sobic002G189000 Sobic001G314300 Sobic001G314300 Sobic001G095750--Sobic001G314300 Sobic002G137800 Sobic002G137800 Sobic001G095750--Sobic002G137800 Sobic006G114200 Sobic006G114200 Sobic001G095750--Sobic006G114200 Sobic003G234800 Sobic003G234800 Sobic001G095750--Sobic003G234800 Sobic005G087800 Sobic005G087800 Sobic001G095750--Sobic005G087800 Sobic001G161200 Sobic001G161200 Sobic001G095750--Sobic001G161200 Sobic010G016500--Sobic004G281200 Sobic010G016500--Sobic004G244300 Sobic006G194600 Sobic006G194600 Sobic010G016500--Sobic006G194600 Sobic010G016500--Sobic006G203000 Sobic004G283300 Sobic004G283300 Sobic010G016500--Sobic004G283300 Sobic010G016500--Sobic002G217100 Sobic004G244100 Sobic004G244100 Sobic010G016500--Sobic004G244100 Sobic010G016500--Sobic001G081600 Sobic010G016500--Sobic002G182800 Sobic001G081600--Sobic001G462800 Sobic001G081600--Sobic002G217100 Sobic001G081600--Sobic006G210300 Sobic001G081600--Sobic004G283300 Sobic001G081600--Sobic002G197600 Sobic001G081600--Sobic004G281200 Sobic001G081600--Sobic002G344700 Sobic004G025000 Sobic004G025000 Sobic001G081600--Sobic004G025000 Sobic001G476400 Sobic001G476400 Sobic001G081600--Sobic001G476400 Sobic002G182800--Sobic009G128300 Sobic001G509400 Sobic001G509400 Sobic002G182800--Sobic001G509400 Sobic003G233900 Sobic003G233900 Sobic002G182800--Sobic003G233900 Sobic001G075101 Sobic001G075101 Sobic002G182800--Sobic001G075101 Sobic002G331450 Sobic002G331450 Sobic002G182800--Sobic002G331450 Sobic003G227600 Sobic003G227600 Sobic002G182800--Sobic003G227600 Sobic003G040800 Sobic003G040800 Sobic002G182800--Sobic003G040800 Sobic010G085400 Sobic010G085400 Sobic002G182800--Sobic010G085400 Sobic002G342100 Sobic002G342100 Sobic002G182800--Sobic002G342100 Sobic002G037400 Sobic002G037400 Sobic006G203000--Sobic002G037400 Sobic006G203000--Sobic001G075101 Sobic007G169600 Sobic007G169600 Sobic006G203000--Sobic007G169600 Sobic006G203000--Sobic002G331450 Sobic003G083000 Sobic003G083000 Sobic006G203000--Sobic003G083000 Sobic002G325600 Sobic002G325600 Sobic006G203000--Sobic002G325600 Sobic006G026400 Sobic006G026400 Sobic006G203000--Sobic006G026400 Sobic002G023900 Sobic002G023900 Sobic006G203000--Sobic002G023900 Sobic002G110200 Sobic002G110200 Sobic006G203000--Sobic002G110200 Sobic009G128300--Sobic002G182800 Sobic009G128300--Sobic003G233900 Sobic009G128300--Sobic003G227600 Sobic009G128300--Sobic001G509400 Sobic009G128300--Sobic002G342100 Sobic009G128300--Sobic002G331450 Sobic008G044750 Sobic008G044750 Sobic009G128300--Sobic008G044750 Sobic003G079800 Sobic003G079800 Sobic009G128300--Sobic003G079800 Sobic009G128300--Sobic001G075101 Sobic004G244300--Sobic004G281200 Sobic004G244300--Sobic006G194600 Sobic004G244300--Sobic010G016500 Sobic004G244300--Sobic006G203000 Sobic004G244300--Sobic004G244100 Sobic009G167000 Sobic009G167000 Sobic004G244300--Sobic009G167000 Sobic004G244300--Sobic002G217100 Sobic004G244300--Sobic002G037400 Sobic004G244300--Sobic001G075101
Octagon: transcription factors


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