Gene annotation
Transcriptome id Sobic.005G024100.1
Synonym
Functional annotation rhamnogalacturonate lyase, putative, expressed
UniProt A0A1B6PPT7
Pfam PF14686 PF14683 PF06045
Panther DB PTHR32018 PTHR32018:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G09890 : Rhamnogalacturonate lyase family protein
RAP-DB (Rice) LOC_Os12g03790.1 : rhamnogalacturonate lyase, putative, expressed
MaizeGDB (Corn) Zm00025a019504 , Zm00025a019503 , Zm00025a033385
Brachypodium KQK01669 , PNT67317 , KQK01670 , KQK01668
Barley HORVU6Hr1G019340.1 , HORVU6Hr1G010870.8 , HORVU6Hr1G010870.9 , HORVU6Hr1G019370.1 , HORVU6Hr1G010870.1 , HORVU6Hr1G010870.2 , HORVU6Hr1G010870.4 , HORVU6Hr1G010870.5 , HORVU6Hr1G010870.6 , HORVU6Hr1G010870.7 , HORVU4Hr1G026250.3 , HORVU4Hr1G026250.2 , HORVU4Hr1G026250.1 , HORVU4Hr1G026250.6 , HORVU4Hr1G026250.5 , HORVU4Hr1G026250.4
Wheat TraesCS4A02G187200 , TraesCSU02G121100 , TraesCS6B02G078500 , TraesCS6D02G096400 , TraesCS6A02G055300 , TraesCS6A02G055300 , TraesCS6D02G096200 , TraesCS6A02G108200 , TraesCS6B02G136900 , TraesCS6B02G136800 , TraesCS4B02G130900 , TraesCS6A02G108400 , TraesCS4D02G126300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G267800 expressed protein -
2 Sobic.010G167200 expressed protein -
3 Sobic.001G430700 expressed protein -
4 Sobic.002G203100 similar to Putative uncharacterized protein(PubMedID : 29862293)@CAMK_KIN1/SNF1/Nim1_like.33 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
5 Sobic.010G226300 SMP-30/Gluconolaconase/LRE-like region containing protein, expressed -
6 Sobic.001G480000 OsFBX171 - F-box domain containing protein, expressed -
7 Sobic.006G115200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
8 Sobic.001G106200 Homeobox domain containing protein, expressed -
9 Sobic.004G303400 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
10 Sobic.007G048500 CXXC1 - Cysteine-rich protein with CXXC and CXXXC motifs precursor, putative, expressed -
11 Sobic.010G150200 OsFBX209 - F-box domain containing protein, expressed -
12 Sobic.010G259400 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
13 Sobic.009G074900 expressed protein -
14 Sobic.007G029900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
15 Sobic.007G206000 dihydroflavonol-4-reductase, putative, expressed -
16 Sobic.003G016000 LTPL18 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
17 Sobic.004G202800 glycosyl hydrolase family 5 protein, putative, expressed -
18 Sobic.009G075000 expressed protein -
19 Sobic.003G088200 dihydroflavonol-4-reductase, putative, expressed -
20 Sobic.010G062200 expressed protein -


Gene co-expression network
sample Sobic005G024100 Sobic005G024100 Sobic002G267800 Sobic002G267800 Sobic005G024100--Sobic002G267800 Sobic010G167200 Sobic010G167200 Sobic005G024100--Sobic010G167200 Sobic001G430700 Sobic001G430700 Sobic005G024100--Sobic001G430700 Sobic002G203100 Sobic002G203100 Sobic005G024100--Sobic002G203100 Sobic010G226300 Sobic010G226300 Sobic005G024100--Sobic010G226300 Sobic001G480000 Sobic001G480000 Sobic005G024100--Sobic001G480000 Sobic006G115200 Sobic006G115200 Sobic005G024100--Sobic006G115200 Sobic001G106200 Sobic001G106200 Sobic005G024100--Sobic001G106200 Sobic004G303400 Sobic004G303400 Sobic005G024100--Sobic004G303400 Sobic002G267800--Sobic001G430700 Sobic001G106000 Sobic001G106000 Sobic002G267800--Sobic001G106000 Sobic003G040800 Sobic003G040800 Sobic002G267800--Sobic003G040800 Sobic001G450800 Sobic001G450800 Sobic002G267800--Sobic001G450800 Sobic002G267800--Sobic001G106200 Sobic003G141800 Sobic003G141800 Sobic002G267800--Sobic003G141800 Sobic001G307200 Sobic001G307200 Sobic002G267800--Sobic001G307200 Sobic004G285100 Sobic004G285100 Sobic002G267800--Sobic004G285100 Sobic003G017200 Sobic003G017200 Sobic002G267800--Sobic003G017200 Sobic010G062200 Sobic010G062200 Sobic010G167200--Sobic010G062200 Sobic010G259400 Sobic010G259400 Sobic010G167200--Sobic010G259400 Sobic009G074900 Sobic009G074900 Sobic010G167200--Sobic009G074900 Sobic009G075000 Sobic009G075000 Sobic010G167200--Sobic009G075000 Sobic003G088200 Sobic003G088200 Sobic010G167200--Sobic003G088200 Sobic002G402233 Sobic002G402233 Sobic010G167200--Sobic002G402233 Sobic003G016000 Sobic003G016000 Sobic010G167200--Sobic003G016000 Sobic007G107500 Sobic007G107500 Sobic010G167200--Sobic007G107500 Sobic007G037400 Sobic007G037400 Sobic010G167200--Sobic007G037400 Sobic001G430700--Sobic001G450800 Sobic003G361300 Sobic003G361300 Sobic001G430700--Sobic003G361300 Sobic001G430700--Sobic001G106000 Sobic001G430700--Sobic003G040800 Sobic001G430700--Sobic004G285100 Sobic003G233900 Sobic003G233900 Sobic001G430700--Sobic003G233900 Sobic001G430700--Sobic002G267800 Sobic001G430700--Sobic003G141800 Sobic009G000700 Sobic009G000700 Sobic001G430700--Sobic009G000700 Sobic002G010100 Sobic002G010100 Sobic002G203100--Sobic002G010100 Sobic009G006600 Sobic009G006600 Sobic002G203100--Sobic009G006600 Sobic008G149650 Sobic008G149650 Sobic002G203100--Sobic008G149650 Sobic002G353100 Sobic002G353100 Sobic002G203100--Sobic002G353100 Sobic002G203100--Sobic001G106200 Sobic002G203100--Sobic002G267800 Sobic003G090650 Sobic003G090650 Sobic002G203100--Sobic003G090650 Sobic002G203100--Sobic005G024100 Sobic002G203100--Sobic001G307200 Sobic010G048200 Sobic010G048200 Sobic010G226300--Sobic010G048200 Sobic006G127750 Sobic006G127750 Sobic010G226300--Sobic006G127750 Sobic001G110100 Sobic001G110100 Sobic010G226300--Sobic001G110100 Sobic010G226300--Sobic009G074900 Sobic010G226300--Sobic010G167200 Sobic002G173300 Sobic002G173300 Sobic010G226300--Sobic002G173300 Sobic010G050100 Sobic010G050100 Sobic010G226300--Sobic010G050100 Sobic004G202800 Sobic004G202800 Sobic010G226300--Sobic004G202800 Sobic010G226300--Sobic003G016000 Sobic001G459700 Sobic001G459700 Sobic001G480000--Sobic001G459700 Sobic007G206000 Sobic007G206000 Sobic001G480000--Sobic007G206000 Sobic001G480000--Sobic010G167200 Sobic008G032400 Sobic008G032400 Sobic001G480000--Sobic008G032400 Sobic001G133200 Sobic001G133200 Sobic001G480000--Sobic001G133200 Sobic001G133100 Sobic001G133100 Sobic006G115200--Sobic001G133100 Sobic006G115200--Sobic002G173300 Sobic007G180700 Sobic007G180700 Sobic006G115200--Sobic007G180700 Sobic003G004900 Sobic003G004900 Sobic006G115200--Sobic003G004900 Sobic004G001700 Sobic004G001700 Sobic006G115200--Sobic004G001700 Sobic003G038800 Sobic003G038800 Sobic006G115200--Sobic003G038800 Sobic003G038700 Sobic003G038700 Sobic006G115200--Sobic003G038700 Sobic002G410600 Sobic002G410600 Sobic006G115200--Sobic002G410600 Sobic006G006800 Sobic006G006800 Sobic006G115200--Sobic006G006800 Sobic001G106200--Sobic001G106000 Sobic001G106200--Sobic002G010100 Sobic001G106200--Sobic003G040800 Sobic002G023900 Sobic002G023900 Sobic001G106200--Sobic002G023900 Sobic001G145100 Sobic001G145100 Sobic001G106200--Sobic001G145100 Sobic001G106200--Sobic002G267800 Sobic007G153001 Sobic007G153001 Sobic001G106200--Sobic007G153001 Sobic001G106200--Sobic001G430700 Sobic001G106200--Sobic001G450800 Sobic007G070200 Sobic007G070200 Sobic004G303400--Sobic007G070200 Sobic003G223900 Sobic003G223900 Sobic004G303400--Sobic003G223900 Sobic001G119700 Sobic001G119700 Sobic004G303400--Sobic001G119700 Sobic001G398300 Sobic001G398300 Sobic004G303400--Sobic001G398300 Sobic006G046600 Sobic006G046600 Sobic004G303400--Sobic006G046600 Sobic003G143900 Sobic003G143900 Sobic004G303400--Sobic003G143900 Sobic010G150200 Sobic010G150200 Sobic004G303400--Sobic010G150200 Sobic001G404700 Sobic001G404700 Sobic004G303400--Sobic001G404700 Sobic001G139300 Sobic001G139300 Sobic004G303400--Sobic001G139300
Octagon: transcription factors


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