Gene annotation
Transcriptome id Sobic.002G263000.1,Sobic.002G263000.2
Synonym Sb02g029790
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
expressed protein
UniProt A0A1B6QDL0 , A0A1B6QDL7
Pfam -
Panther DB PTHR33913 PTHR33913:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G05950 : -
RAP-DB (Rice) LOC_Os09g33940.1 : expressed protein
MaizeGDB (Corn) Zm00025a047651
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G263000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G086400 OsMADS34 - MADS-box family gene with MIKCc type-box, expressed -
2 Sobic.001G171200 expressed protein -
3 Sobic.002G121900 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
4 Sobic.001G137400 ankyrin, putative, expressed -
5 Sobic.004G220200 expressed protein -
6 Sobic.010G194600 CW-type Zinc Finger, putative, expressed -
7 Sobic.003G091550 - -
8 Sobic.003G022900 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
9 Sobic.009G219500 dehydrogenase/reductase SDR family member 2, putative, expressed K11147: dehydrogenase/reductase SDR family member 4
10 Sobic.007G128200 expressed protein -
11 Sobic.002G053350 - -
12 Sobic.003G088600 transcription factor X1, putative, expressed -
13 Sobic.001G137800 ankyrin, putative, expressed -
14 Sobic.007G193300 OsMADS7 - MADS-box family gene with MIKCc type-box, expressed -
15 Sobic.007G088800 MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
16 Sobic.006G097300 F-box protein FBW2, putative, expressed -
17 Sobic.001G137600 ankyrin, putative, expressed -
18 Sobic.007G043000 transcription factor X1, putative, expressed -
19 Sobic.004G149400 ankyrin, putative, expressed -
20 Sobic.001G137500 ankyrin, putative, expressed -


Gene co-expression network
sample Sobic002G263000 Sobic002G263000 Sobic001G086400 Sobic001G086400 Sobic002G263000--Sobic001G086400 Sobic001G171200 Sobic001G171200 Sobic002G263000--Sobic001G171200 Sobic002G121900 Sobic002G121900 Sobic002G263000--Sobic002G121900 Sobic001G137400 Sobic001G137400 Sobic002G263000--Sobic001G137400 Sobic004G220200 Sobic004G220200 Sobic002G263000--Sobic004G220200 Sobic010G194600 Sobic010G194600 Sobic002G263000--Sobic010G194600 Sobic003G091550 Sobic003G091550 Sobic002G263000--Sobic003G091550 Sobic003G022900 Sobic003G022900 Sobic002G263000--Sobic003G022900 Sobic009G219500 Sobic009G219500 Sobic002G263000--Sobic009G219500 Sobic001G086400--Sobic002G263000 Sobic003G207000 Sobic003G207000 Sobic001G086400--Sobic003G207000 Sobic001G137800 Sobic001G137800 Sobic001G086400--Sobic001G137800 Sobic001G086400--Sobic010G194600 Sobic001G086400--Sobic001G137400 Sobic001G086400--Sobic002G121900 Sobic002G053350 Sobic002G053350 Sobic001G086400--Sobic002G053350 Sobic007G128200 Sobic007G128200 Sobic001G086400--Sobic007G128200 Sobic001G086400--Sobic001G171200 Sobic001G171200--Sobic004G220200 Sobic006G097300 Sobic006G097300 Sobic001G171200--Sobic006G097300 Sobic001G171200--Sobic007G128200 Sobic004G234600 Sobic004G234600 Sobic001G171200--Sobic004G234600 Sobic001G171200--Sobic002G121900 Sobic007G193300 Sobic007G193300 Sobic001G171200--Sobic007G193300 Sobic001G171200--Sobic010G194600 Sobic001G171200--Sobic001G086400 Sobic001G457600 Sobic001G457600 Sobic001G171200--Sobic001G457600 Sobic007G043000 Sobic007G043000 Sobic002G121900--Sobic007G043000 Sobic001G287900 Sobic001G287900 Sobic002G121900--Sobic001G287900 Sobic002G121900--Sobic001G137800 Sobic002G121900--Sobic007G128200 Sobic001G235100 Sobic001G235100 Sobic002G121900--Sobic001G235100 Sobic002G121900--Sobic007G193300 Sobic008G138200 Sobic008G138200 Sobic002G121900--Sobic008G138200 Sobic003G374100 Sobic003G374100 Sobic002G121900--Sobic003G374100 Sobic002G121900--Sobic001G171200 Sobic001G137500 Sobic001G137500 Sobic001G137400--Sobic001G137500 Sobic002G258000 Sobic002G258000 Sobic001G137400--Sobic002G258000 Sobic001G137400--Sobic007G193300 Sobic001G137400--Sobic001G457600 Sobic001G137400--Sobic010G194600 Sobic001G288000 Sobic001G288000 Sobic001G137400--Sobic001G288000 Sobic009G243000 Sobic009G243000 Sobic001G137400--Sobic009G243000 Sobic001G137400--Sobic001G086400 Sobic001G419500 Sobic001G419500 Sobic001G137400--Sobic001G419500 Sobic004G220200--Sobic001G171200 Sobic004G220200--Sobic001G137400 Sobic004G220200--Sobic009G243000 Sobic004G220200--Sobic004G234600 Sobic004G220200--Sobic001G086400 Sobic004G220200--Sobic010G194600 Sobic006G163300 Sobic006G163300 Sobic004G220200--Sobic006G163300 Sobic004G220200--Sobic002G053350 Sobic001G137600 Sobic001G137600 Sobic004G220200--Sobic001G137600 Sobic010G194600--Sobic001G457600 Sobic006G271600 Sobic006G271600 Sobic010G194600--Sobic006G271600 Sobic010G194600--Sobic007G128200 Sobic010G194600--Sobic001G137500 Sobic010G194600--Sobic001G419500 Sobic003G088600 Sobic003G088600 Sobic010G194600--Sobic003G088600 Sobic010G194600--Sobic004G234600 Sobic009G063700 Sobic009G063700 Sobic010G194600--Sobic009G063700 Sobic003G300000 Sobic003G300000 Sobic010G194600--Sobic003G300000 Sobic002G220700 Sobic002G220700 Sobic003G091550--Sobic002G220700 Sobic003G091550--Sobic002G121900 Sobic003G274000 Sobic003G274000 Sobic003G091550--Sobic003G274000 Sobic009G088700 Sobic009G088700 Sobic003G091550--Sobic009G088700 Sobic004G215500 Sobic004G215500 Sobic003G091550--Sobic004G215500 Sobic003G091550--Sobic002G263000 Sobic010G087700 Sobic010G087700 Sobic003G091550--Sobic010G087700 Sobic006G228000 Sobic006G228000 Sobic003G091550--Sobic006G228000 Sobic006G111100 Sobic006G111100 Sobic003G091550--Sobic006G111100 Sobic001G171100 Sobic001G171100 Sobic003G022900--Sobic001G171100 Sobic003G022900--Sobic006G097300 Sobic003G022900--Sobic001G171200 Sobic003G022900--Sobic007G193300 Sobic008G072900 Sobic008G072900 Sobic003G022900--Sobic008G072900 Sobic010G212700 Sobic010G212700 Sobic003G022900--Sobic010G212700 Sobic006G066400 Sobic006G066400 Sobic003G022900--Sobic006G066400 Sobic003G022900--Sobic001G137400 Sobic004G218000 Sobic004G218000 Sobic003G022900--Sobic004G218000 Sobic009G219500--Sobic003G088600 Sobic009G219500--Sobic006G271600 Sobic004G101200 Sobic004G101200 Sobic009G219500--Sobic004G101200 Sobic009G219500--Sobic010G194600 Sobic009G219500--Sobic001G137800 Sobic003G129200 Sobic003G129200 Sobic009G219500--Sobic003G129200 Sobic009G219500--Sobic001G086400 Sobic008G137700 Sobic008G137700 Sobic009G219500--Sobic008G137700 Sobic003G117200 Sobic003G117200 Sobic009G219500--Sobic003G117200
Octagon: transcription factors


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