Gene annotation
Transcriptome id Sobic.007G088800.1
Synonym BPM1, ATBPM1, Sb07g007740
Functional annotation MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed
UniProt A0A1Z5R8S3
Pfam PF00651
Panther DB PTHR26379 PTHR26379:SF161
NCBI CDD KOG1987; Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains
KEGG Orthology K10523; speckle-type POZ protein
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G06190 : BTB-POZ and MATH domain 2
RAP-DB (Rice) LOC_Os08g13030.1 : MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G088800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G194600 CW-type Zinc Finger, putative, expressed -
2 Sobic.003G207000 expressed protein -
3 Sobic.001G086400 OsMADS34 - MADS-box family gene with MIKCc type-box, expressed -
4 Sobic.006G112300 RNA recognition motif family protein, expressed -
5 Sobic.007G128200 expressed protein -
6 Sobic.002G053350 - -
7 Sobic.004G234600 expressed protein -
8 Sobic.005G166100 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
9 Sobic.007G043000 transcription factor X1, putative, expressed -
10 Sobic.001G216400 nodulin, putative, expressed K07192: flotillin
11 Sobic.001G137400 ankyrin, putative, expressed -
12 Sobic.003G088600 transcription factor X1, putative, expressed -
13 Sobic.006G097300 F-box protein FBW2, putative, expressed -
14 Sobic.001G419500 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
15 Sobic.001G137800 ankyrin, putative, expressed -
16 Sobic.001G457600 piwi domain containing protein, expressed -
17 Sobic.001G171200 expressed protein -
18 Sobic.009G063700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
19 Sobic.003G374100 beta-galactosidase precursor, putative, expressed -
20 Sobic.006G015100 expressed protein -


Gene co-expression network
sample Sobic007G088800 Sobic007G088800 Sobic010G194600 Sobic010G194600 Sobic007G088800--Sobic010G194600 Sobic003G207000 Sobic003G207000 Sobic007G088800--Sobic003G207000 Sobic001G086400 Sobic001G086400 Sobic007G088800--Sobic001G086400 Sobic006G112300 Sobic006G112300 Sobic007G088800--Sobic006G112300 Sobic007G128200 Sobic007G128200 Sobic007G088800--Sobic007G128200 Sobic002G053350 Sobic002G053350 Sobic007G088800--Sobic002G053350 Sobic004G234600 Sobic004G234600 Sobic007G088800--Sobic004G234600 Sobic005G166100 Sobic005G166100 Sobic007G088800--Sobic005G166100 Sobic007G043000 Sobic007G043000 Sobic007G088800--Sobic007G043000 Sobic001G457600 Sobic001G457600 Sobic010G194600--Sobic001G457600 Sobic006G271600 Sobic006G271600 Sobic010G194600--Sobic006G271600 Sobic010G194600--Sobic007G128200 Sobic001G137500 Sobic001G137500 Sobic010G194600--Sobic001G137500 Sobic001G419500 Sobic001G419500 Sobic010G194600--Sobic001G419500 Sobic003G088600 Sobic003G088600 Sobic010G194600--Sobic003G088600 Sobic010G194600--Sobic004G234600 Sobic009G063700 Sobic009G063700 Sobic010G194600--Sobic009G063700 Sobic003G300000 Sobic003G300000 Sobic010G194600--Sobic003G300000 Sobic003G191600 Sobic003G191600 Sobic003G207000--Sobic003G191600 Sobic003G207000--Sobic005G166100 Sobic003G207000--Sobic009G063700 Sobic003G207000--Sobic001G086400 Sobic003G207000--Sobic010G194600 Sobic001G459400 Sobic001G459400 Sobic003G207000--Sobic001G459400 Sobic001G158100 Sobic001G158100 Sobic003G207000--Sobic001G158100 Sobic003G207000--Sobic003G300000 Sobic009G075500 Sobic009G075500 Sobic003G207000--Sobic009G075500 Sobic002G263000 Sobic002G263000 Sobic001G086400--Sobic002G263000 Sobic001G086400--Sobic003G207000 Sobic001G137800 Sobic001G137800 Sobic001G086400--Sobic001G137800 Sobic001G086400--Sobic010G194600 Sobic001G137400 Sobic001G137400 Sobic001G086400--Sobic001G137400 Sobic002G121900 Sobic002G121900 Sobic001G086400--Sobic002G121900 Sobic001G086400--Sobic002G053350 Sobic001G086400--Sobic007G128200 Sobic001G171200 Sobic001G171200 Sobic001G086400--Sobic001G171200 Sobic006G015100 Sobic006G015100 Sobic006G112300--Sobic006G015100 Sobic006G112300--Sobic010G194600 Sobic006G112300--Sobic003G300000 Sobic006G112300--Sobic006G271600 Sobic006G112300--Sobic003G088600 Sobic006G112300--Sobic007G043000 Sobic001G235100 Sobic001G235100 Sobic006G112300--Sobic001G235100 Sobic006G112300--Sobic007G128200 Sobic006G112300--Sobic001G137800 Sobic007G128200--Sobic004G234600 Sobic007G128200--Sobic009G063700 Sobic007G128200--Sobic010G194600 Sobic001G216400 Sobic001G216400 Sobic007G128200--Sobic001G216400 Sobic007G128200--Sobic001G158100 Sobic007G128200--Sobic001G457600 Sobic004G056000 Sobic004G056000 Sobic007G128200--Sobic004G056000 Sobic007G128200--Sobic005G166100 Sobic007G128200--Sobic007G043000 Sobic002G053350--Sobic004G234600 Sobic002G053350--Sobic003G088600 Sobic008G137700 Sobic008G137700 Sobic002G053350--Sobic008G137700 Sobic002G053350--Sobic007G128200 Sobic002G053350--Sobic001G216400 Sobic002G053350--Sobic001G419500 Sobic002G053350--Sobic010G194600 Sobic007G193300 Sobic007G193300 Sobic002G053350--Sobic007G193300 Sobic002G053350--Sobic001G137500 Sobic004G234600--Sobic007G128200 Sobic004G234600--Sobic001G216400 Sobic004G234600--Sobic009G063700 Sobic004G234600--Sobic002G053350 Sobic004G234600--Sobic001G457600 Sobic004G234600--Sobic001G419500 Sobic004G234600--Sobic010G194600 Sobic004G234600--Sobic001G158100 Sobic010G183800 Sobic010G183800 Sobic004G234600--Sobic010G183800 Sobic005G166100--Sobic001G216400 Sobic005G166100--Sobic004G056000 Sobic005G166100--Sobic009G063700 Sobic005G166100--Sobic007G128200 Sobic003G381100 Sobic003G381100 Sobic005G166100--Sobic003G381100 Sobic005G166100--Sobic009G075500 Sobic005G166100--Sobic001G419500 Sobic005G166100--Sobic007G193300 Sobic006G097300 Sobic006G097300 Sobic005G166100--Sobic006G097300 Sobic007G043000--Sobic001G235100 Sobic007G043000--Sobic002G121900 Sobic004G254100 Sobic004G254100 Sobic007G043000--Sobic004G254100 Sobic008G138200 Sobic008G138200 Sobic007G043000--Sobic008G138200 Sobic007G043000--Sobic001G137800 Sobic007G043000--Sobic001G216400 Sobic007G043000--Sobic003G381100 Sobic007G043000--Sobic007G128200 Sobic003G063700 Sobic003G063700 Sobic007G043000--Sobic003G063700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.