Gene annotation
Transcriptome id Sobic.010G252900.1,Sobic.010G252900.2
Synonym ATMBD2, MBD2, Sb10g029100, MBD02
Functional annotation methyl-binding domain protein MBD, putative, expressed
UniProt C5Z978
Pfam PF07496 PF01429
Panther DB PTHR12396 PTHR12396:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005634nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G35330 : methyl-CPG-binding domain protein 02
RAP-DB (Rice) LOC_Os06g48870.1 : methyl-binding domain protein MBD, putative, expressed
MaizeGDB (Corn) -
Brachypodium PNT75540 , KQK17414 , KQK17413
Barley HORVU7Hr1G096760.4 , HORVU7Hr1G096760.2 , HORVU7Hr1G096760.1
Wheat TraesCS7D02G410300 , TraesCS7B02G317400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G284400 jmjC domain containing protein, expressed -
2 Sobic.002G373600 von Willebrand factor type A domain containing protein, expressed -
3 Sobic.001G284425 - -
4 Sobic.003G144200 Homeobox domain containing protein, expressed -
5 Sobic.006G199700 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
6 Sobic.003G435400 OsDegp14 - Putative Deg protease homologue, expressed -
7 Sobic.004G040800 ZOS2-03 - C2H2 zinc finger protein, expressed -
8 Sobic.010G075000 DNA ligase, putative, expressed -
9 Sobic.003G424300 Pyrroline-5-carboxylate reductase(PubMedID : 24906815)@pyrroline-5-carboxylate reductase, putative, expressed K00286: pyrroline-5-carboxylate reductase
10 Sobic.005G044300 exo70 exocyst complex subunit, putative, expressed K07195: EXOC7, exocyst complex component 7
11 Sobic.002G362000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@vesicle transport protein GOT1B, putative, expressed -
12 Sobic.003G227200 mitochondrial import receptor subunit TOM7-1, putative, expressed K17771: mitochondrial import receptor subunit TOM7
13 Sobic.003G023500 syntaxin, putative, expressed K08489: syntaxin 16
14 Sobic.009G159900 homeodomain protein, putative, expressed -
15 Sobic.010G201388 - -
16 Sobic.010G186500 targeting protein for Xklp2, putative, expressed -
17 Sobic.001G075800 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
18 Sobic.004G234300 DUF581 domain containing protein, expressed -
19 Sobic.006G128200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Kinase(PubMedID : 30367619)@protein kinase, putative, expressed -
20 Sobic.003G385000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine protein kinase, putative, expressed -


Gene co-expression network
sample Sobic010G252900 Sobic010G252900 Sobic001G284400 Sobic001G284400 Sobic010G252900--Sobic001G284400 Sobic002G373600 Sobic002G373600 Sobic010G252900--Sobic002G373600 Sobic001G284425 Sobic001G284425 Sobic010G252900--Sobic001G284425 Sobic003G144200 Sobic003G144200 Sobic010G252900--Sobic003G144200 Sobic006G199700 Sobic006G199700 Sobic010G252900--Sobic006G199700 Sobic003G435400 Sobic003G435400 Sobic010G252900--Sobic003G435400 Sobic004G040800 Sobic004G040800 Sobic010G252900--Sobic004G040800 Sobic010G075000 Sobic010G075000 Sobic010G252900--Sobic010G075000 Sobic003G424300 Sobic003G424300 Sobic010G252900--Sobic003G424300 Sobic001G284400--Sobic002G373600 Sobic001G284400--Sobic001G284425 Sobic008G129000 Sobic008G129000 Sobic001G284400--Sobic008G129000 Sobic010G076700 Sobic010G076700 Sobic001G284400--Sobic010G076700 Sobic003G385000 Sobic003G385000 Sobic001G284400--Sobic003G385000 Sobic001G284400--Sobic010G252900 Sobic005G044300 Sobic005G044300 Sobic001G284400--Sobic005G044300 Sobic006G263100 Sobic006G263100 Sobic001G284400--Sobic006G263100 Sobic001G409900 Sobic001G409900 Sobic001G284400--Sobic001G409900 Sobic002G373600--Sobic001G284400 Sobic002G373600--Sobic001G284425 Sobic002G373600--Sobic003G385000 Sobic002G373600--Sobic006G199700 Sobic002G373600--Sobic010G252900 Sobic002G373600--Sobic003G435400 Sobic010G134700 Sobic010G134700 Sobic002G373600--Sobic010G134700 Sobic010G220400 Sobic010G220400 Sobic002G373600--Sobic010G220400 Sobic003G327600 Sobic003G327600 Sobic002G373600--Sobic003G327600 Sobic001G284425--Sobic003G385000 Sobic001G284425--Sobic001G284400 Sobic001G284425--Sobic002G373600 Sobic001G284425--Sobic006G199700 Sobic006G069200 Sobic006G069200 Sobic001G284425--Sobic006G069200 Sobic001G284425--Sobic010G076700 Sobic003G223800 Sobic003G223800 Sobic001G284425--Sobic003G223800 Sobic001G075800 Sobic001G075800 Sobic001G284425--Sobic001G075800 Sobic001G284425--Sobic010G134700 Sobic003G017200 Sobic003G017200 Sobic003G144200--Sobic003G017200 Sobic002G023900 Sobic002G023900 Sobic003G144200--Sobic002G023900 Sobic001G157400 Sobic001G157400 Sobic003G144200--Sobic001G157400 Sobic009G159900 Sobic009G159900 Sobic003G144200--Sobic009G159900 Sobic001G050800 Sobic001G050800 Sobic003G144200--Sobic001G050800 Sobic001G316900 Sobic001G316900 Sobic003G144200--Sobic001G316900 Sobic001G106000 Sobic001G106000 Sobic003G144200--Sobic001G106000 Sobic009G170100 Sobic009G170100 Sobic003G144200--Sobic009G170100 Sobic007G153001 Sobic007G153001 Sobic003G144200--Sobic007G153001 Sobic006G199700--Sobic003G435400 Sobic006G199700--Sobic002G373600 Sobic006G199700--Sobic003G385000 Sobic006G199700--Sobic001G284425 Sobic006G199700--Sobic006G069200 Sobic006G199700--Sobic003G223800 Sobic008G010900 Sobic008G010900 Sobic006G199700--Sobic008G010900 Sobic004G098800 Sobic004G098800 Sobic006G199700--Sobic004G098800 Sobic002G019750 Sobic002G019750 Sobic006G199700--Sobic002G019750 Sobic003G435400--Sobic006G199700 Sobic001G414100 Sobic001G414100 Sobic003G435400--Sobic001G414100 Sobic006G096800 Sobic006G096800 Sobic003G435400--Sobic006G096800 Sobic002G290100 Sobic002G290100 Sobic003G435400--Sobic002G290100 Sobic003G435400--Sobic004G098800 Sobic003G435400--Sobic002G373600 Sobic003G392275 Sobic003G392275 Sobic003G435400--Sobic003G392275 Sobic003G435400--Sobic010G134700 Sobic003G435400--Sobic003G223800 Sobic010G222900 Sobic010G222900 Sobic004G040800--Sobic010G222900 Sobic004G040800--Sobic003G435400 Sobic004G234300 Sobic004G234300 Sobic004G040800--Sobic004G234300 Sobic003G369600 Sobic003G369600 Sobic004G040800--Sobic003G369600 Sobic001G496900 Sobic001G496900 Sobic004G040800--Sobic001G496900 Sobic004G040800--Sobic006G199700 Sobic006G017600 Sobic006G017600 Sobic004G040800--Sobic006G017600 Sobic004G040800--Sobic010G252900 Sobic004G040800--Sobic006G096800 Sobic010G075000--Sobic001G284400 Sobic004G353500 Sobic004G353500 Sobic010G075000--Sobic004G353500 Sobic001G499600 Sobic001G499600 Sobic010G075000--Sobic001G499600 Sobic010G075000--Sobic005G044300 Sobic010G075000--Sobic002G373600 Sobic003G270100 Sobic003G270100 Sobic010G075000--Sobic003G270100 Sobic010G075000--Sobic010G252900 Sobic006G128200 Sobic006G128200 Sobic010G075000--Sobic006G128200 Sobic010G201388 Sobic010G201388 Sobic010G075000--Sobic010G201388 Sobic004G331900 Sobic004G331900 Sobic003G424300--Sobic004G331900 Sobic003G348200 Sobic003G348200 Sobic003G424300--Sobic003G348200 Sobic003G424300--Sobic003G327600 Sobic003G312400 Sobic003G312400 Sobic003G424300--Sobic003G312400 Sobic001G061900 Sobic001G061900 Sobic003G424300--Sobic001G061900 Sobic009G194200 Sobic009G194200 Sobic003G424300--Sobic009G194200 Sobic003G353400 Sobic003G353400 Sobic003G424300--Sobic003G353400 Sobic009G182200 Sobic009G182200 Sobic003G424300--Sobic009G182200 Sobic010G186500 Sobic010G186500 Sobic003G424300--Sobic010G186500
Octagon: transcription factors


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