Gene annotation
Transcriptome id Sobic.010G075000.1
Synonym Sb10g006566
Functional annotation DNA ligase, putative, expressed
UniProt A0A194YHU8
Pfam PF14520
Panther DB PTHR37394 PTHR37394:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G12790 : -
RAP-DB (Rice) LOC_Os05g51060.1 : DNA ligase, putative, expressed
MaizeGDB (Corn) Zm00025a036755
Brachypodium -
Barley HORVU2Hr1G097620.1 , HORVU2Hr1G013560.1 , HORVU1Hr1G026040.5 , HORVU1Hr1G026040.4 , HORVU2Hr1G013560.2 , HORVU2Hr1G097620.2 , HORVU5Hr1G112780.1 , HORVU5Hr1G069260.4 , HORVU4Hr1G051260.1 , HORVU4Hr1G051260.2
Wheat TraesCS2D02G080300 , TraesCS2D02G080300 , TraesCS2A02G082400 , TraesCS2A02G082400 , TraesCS2B02G096500
Populus -


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cDNA sequences
Sobic.010G075000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G284400 jmjC domain containing protein, expressed -
2 Sobic.004G353500 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
3 Sobic.001G499600 thioredoxin, putative, expressed -
4 Sobic.005G044300 exo70 exocyst complex subunit, putative, expressed K07195: EXOC7, exocyst complex component 7
5 Sobic.002G373600 von Willebrand factor type A domain containing protein, expressed -
6 Sobic.003G270100 dehydrin family protein, expressed -
7 Sobic.010G252900 methyl-binding domain protein MBD, putative, expressed -
8 Sobic.006G128200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Kinase(PubMedID : 30367619)@protein kinase, putative, expressed -
9 Sobic.010G201388 - -
10 Sobic.006G222500 expressed protein -
11 Sobic.003G294900 expressed protein -
12 Sobic.001G203800 expressed protein -
13 Sobic.002G362000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@vesicle transport protein GOT1B, putative, expressed -
14 Sobic.003G435400 OsDegp14 - Putative Deg protease homologue, expressed -
15 Sobic.001G284425 - -
16 Sobic.006G208200 GHMP kinases ATP-binding protein, putative, expressed K18677: galacturonokinase
17 Sobic.004G160800 inositol hexaphosphate kinase, putative, expressed K00915: IPMK, inositol-polyphosphate multikinase
18 Sobic.006G199700 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
19 Sobic.004G186300 protein phosphotase protein, putative, expressed -
20 Sobic.003G308300 OsProCP1 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed K01285: lysosomal Pro-X carboxypeptidase


Gene co-expression network
sample Sobic010G075000 Sobic010G075000 Sobic001G284400 Sobic001G284400 Sobic010G075000--Sobic001G284400 Sobic004G353500 Sobic004G353500 Sobic010G075000--Sobic004G353500 Sobic001G499600 Sobic001G499600 Sobic010G075000--Sobic001G499600 Sobic005G044300 Sobic005G044300 Sobic010G075000--Sobic005G044300 Sobic002G373600 Sobic002G373600 Sobic010G075000--Sobic002G373600 Sobic003G270100 Sobic003G270100 Sobic010G075000--Sobic003G270100 Sobic010G252900 Sobic010G252900 Sobic010G075000--Sobic010G252900 Sobic006G128200 Sobic006G128200 Sobic010G075000--Sobic006G128200 Sobic010G201388 Sobic010G201388 Sobic010G075000--Sobic010G201388 Sobic001G284400--Sobic002G373600 Sobic001G284425 Sobic001G284425 Sobic001G284400--Sobic001G284425 Sobic008G129000 Sobic008G129000 Sobic001G284400--Sobic008G129000 Sobic010G076700 Sobic010G076700 Sobic001G284400--Sobic010G076700 Sobic003G385000 Sobic003G385000 Sobic001G284400--Sobic003G385000 Sobic001G284400--Sobic010G252900 Sobic001G284400--Sobic005G044300 Sobic006G263100 Sobic006G263100 Sobic001G284400--Sobic006G263100 Sobic001G409900 Sobic001G409900 Sobic001G284400--Sobic001G409900 Sobic003G294900 Sobic003G294900 Sobic004G353500--Sobic003G294900 Sobic008G118300 Sobic008G118300 Sobic004G353500--Sobic008G118300 Sobic004G353500--Sobic005G044300 Sobic007G012900 Sobic007G012900 Sobic004G353500--Sobic007G012900 Sobic004G160800 Sobic004G160800 Sobic004G353500--Sobic004G160800 Sobic001G286100 Sobic001G286100 Sobic004G353500--Sobic001G286100 Sobic002G037600 Sobic002G037600 Sobic004G353500--Sobic002G037600 Sobic001G203800 Sobic001G203800 Sobic004G353500--Sobic001G203800 Sobic002G186500 Sobic002G186500 Sobic004G353500--Sobic002G186500 Sobic001G499600--Sobic008G129000 Sobic001G499600--Sobic005G044300 Sobic001G499600--Sobic001G284400 Sobic006G230400 Sobic006G230400 Sobic001G499600--Sobic006G230400 Sobic004G186300 Sobic004G186300 Sobic001G499600--Sobic004G186300 Sobic001G499600--Sobic004G353500 Sobic006G188400 Sobic006G188400 Sobic001G499600--Sobic006G188400 Sobic008G047600 Sobic008G047600 Sobic001G499600--Sobic008G047600 Sobic001G499600--Sobic010G201388 Sobic008G018300 Sobic008G018300 Sobic005G044300--Sobic008G018300 Sobic004G159000 Sobic004G159000 Sobic005G044300--Sobic004G159000 Sobic001G387200 Sobic001G387200 Sobic005G044300--Sobic001G387200 Sobic004G039400 Sobic004G039400 Sobic005G044300--Sobic004G039400 Sobic002G420600 Sobic002G420600 Sobic005G044300--Sobic002G420600 Sobic005G044300--Sobic004G353500 Sobic003G335300 Sobic003G335300 Sobic005G044300--Sobic003G335300 Sobic003G016300 Sobic003G016300 Sobic005G044300--Sobic003G016300 Sobic001G038000 Sobic001G038000 Sobic005G044300--Sobic001G038000 Sobic002G373600--Sobic001G284400 Sobic002G373600--Sobic001G284425 Sobic002G373600--Sobic003G385000 Sobic006G199700 Sobic006G199700 Sobic002G373600--Sobic006G199700 Sobic002G373600--Sobic010G252900 Sobic003G435400 Sobic003G435400 Sobic002G373600--Sobic003G435400 Sobic010G134700 Sobic010G134700 Sobic002G373600--Sobic010G134700 Sobic010G220400 Sobic010G220400 Sobic002G373600--Sobic010G220400 Sobic003G327600 Sobic003G327600 Sobic002G373600--Sobic003G327600 Sobic003G270100--Sobic001G203800 Sobic003G308300 Sobic003G308300 Sobic003G270100--Sobic003G308300 Sobic003G255700 Sobic003G255700 Sobic003G270100--Sobic003G255700 Sobic001G050500 Sobic001G050500 Sobic003G270100--Sobic001G050500 Sobic003G270100--Sobic004G186300 Sobic006G100266 Sobic006G100266 Sobic003G270100--Sobic006G100266 Sobic004G328100 Sobic004G328100 Sobic003G270100--Sobic004G328100 Sobic001G305900 Sobic001G305900 Sobic003G270100--Sobic001G305900 Sobic006G208200 Sobic006G208200 Sobic003G270100--Sobic006G208200 Sobic010G252900--Sobic001G284400 Sobic010G252900--Sobic002G373600 Sobic010G252900--Sobic001G284425 Sobic003G144200 Sobic003G144200 Sobic010G252900--Sobic003G144200 Sobic010G252900--Sobic006G199700 Sobic010G252900--Sobic003G435400 Sobic004G040800 Sobic004G040800 Sobic010G252900--Sobic004G040800 Sobic010G252900--Sobic010G075000 Sobic003G424300 Sobic003G424300 Sobic010G252900--Sobic003G424300 Sobic006G128200--Sobic003G335300 Sobic003G013700 Sobic003G013700 Sobic006G128200--Sobic003G013700 Sobic006G128200--Sobic002G420600 Sobic001G073700 Sobic001G073700 Sobic006G128200--Sobic001G073700 Sobic001G192700 Sobic001G192700 Sobic006G128200--Sobic001G192700 Sobic006G050100 Sobic006G050100 Sobic006G128200--Sobic006G050100 Sobic010G253400 Sobic010G253400 Sobic006G128200--Sobic010G253400 Sobic003G040700 Sobic003G040700 Sobic006G128200--Sobic003G040700 Sobic010G028900 Sobic010G028900 Sobic006G128200--Sobic010G028900 Sobic009G182200 Sobic009G182200 Sobic010G201388--Sobic009G182200 Sobic004G123000 Sobic004G123000 Sobic010G201388--Sobic004G123000 Sobic001G173300 Sobic001G173300 Sobic010G201388--Sobic001G173300 Sobic003G253500 Sobic003G253500 Sobic010G201388--Sobic003G253500 Sobic004G259600 Sobic004G259600 Sobic010G201388--Sobic004G259600 Sobic003G227200 Sobic003G227200 Sobic010G201388--Sobic003G227200 Sobic004G247200 Sobic004G247200 Sobic010G201388--Sobic004G247200 Sobic010G201388--Sobic001G284400 Sobic002G113500 Sobic002G113500 Sobic010G201388--Sobic002G113500
Octagon: transcription factors


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