Gene annotation
Transcriptome id Sobic.004G354100.1
Synonym Sb04g038080
Functional annotation OsSigP5 - Putative Type I Signal Peptidase homologue
employs a putative Ser/His catalytic dyad, expressed
UniProt C5XWN4
Pfam PF00717
Panther DB PTHR10806 PTHR10806:SF10
NCBI CDD KOG3342; Signal peptidase I
KEGG Orthology K13280; SEC11, signal peptidase I
Gene Ontology GO:0016020; membrane GO:0008233peptidase activity GO:0006465signal peptide processing


Orthologs (automatic annotation)
TAIR AT1G52600 : Peptidase S24/S26A/S26B/S26C family protein
RAP-DB (Rice) LOC_Os06g16260.1 : OsSigP5 - Putative Type I Signal Peptidase homologue; employs a putative Ser/His catalytic dyad, expressed
MaizeGDB (Corn) Zm00025a032730
Brachypodium KQK06575
Barley -
Wheat TraesCS6D02G311800 , TraesCS6B02G363400 , TraesCS6D02G312400 , TraesCS6D02G313700 , TraesCS6A02G333000 , TraesCS6A02G333000 , TraesCS6D02G314000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G229300 expressed protein -
2 Sobic.003G085500 signal peptidase complex subunit 3, putative, expressed K12948: SPCS3, signal peptidase complex subunit 3
3 Sobic.010G002800 AGAP000326-PA, putative, expressed K18163: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6
4 Sobic.001G191900 mitochondrial carrier protein, putative, expressed K15109: SLC25A20_29, CACT, CACL, solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29
5 Sobic.004G256300 RNA polymerase Rpb4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
6 Sobic.007G022700 proteasome subunit, putative, expressed K12177: COPS3, COP9 signalosome complex subunit 3
7 Sobic.001G203500 pentatricopeptide, putative, expressed -
8 Sobic.002G153400 meiotic coiled-coil protein 7, putative, expressed -
9 Sobic.001G485300 transcription initiation factor IIE subunit beta, putative, expressed K03137: TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta
10 Sobic.004G129500 expressed protein -
11 Sobic.010G041100 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
12 Sobic.007G010200 - -
13 Sobic.002G232400 clathrin adaptor complex small chain domain containing protein, expressed -
14 Sobic.002G392400 expressed protein -
15 Sobic.010G024000 transketolase, chloroplast precursor, putative, expressed K00615: E2.2.1.1, tktA, transketolase
16 Sobic.004G030400 expressed protein -
17 Sobic.001G432100 expressed protein -
18 Sobic.003G005900 abscisic acid insensitive 8, putative, expressed -
19 Sobic.001G352800 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
20 Sobic.004G157500 RNA polymerase III RPC4 domain containing protein, expressed K03026: RPC4, DNA-directed RNA polymerase III subunit RPC4


Gene co-expression network
sample Sobic004G354100 Sobic004G354100 Sobic001G229300 Sobic001G229300 Sobic004G354100--Sobic001G229300 Sobic003G085500 Sobic003G085500 Sobic004G354100--Sobic003G085500 Sobic010G002800 Sobic010G002800 Sobic004G354100--Sobic010G002800 Sobic001G191900 Sobic001G191900 Sobic004G354100--Sobic001G191900 Sobic004G256300 Sobic004G256300 Sobic004G354100--Sobic004G256300 Sobic007G022700 Sobic007G022700 Sobic004G354100--Sobic007G022700 Sobic001G203500 Sobic001G203500 Sobic004G354100--Sobic001G203500 Sobic002G153400 Sobic002G153400 Sobic004G354100--Sobic002G153400 Sobic001G485300 Sobic001G485300 Sobic004G354100--Sobic001G485300 Sobic001G123600 Sobic001G123600 Sobic001G229300--Sobic001G123600 Sobic003G129300 Sobic003G129300 Sobic001G229300--Sobic003G129300 Sobic001G229300--Sobic004G354100 Sobic001G229300--Sobic004G256300 Sobic003G010900 Sobic003G010900 Sobic001G229300--Sobic003G010900 Sobic002G066800 Sobic002G066800 Sobic001G229300--Sobic002G066800 Sobic003G222700 Sobic003G222700 Sobic001G229300--Sobic003G222700 Sobic002G142700 Sobic002G142700 Sobic001G229300--Sobic002G142700 Sobic006G106600 Sobic006G106600 Sobic001G229300--Sobic006G106600 Sobic003G085500--Sobic001G485300 Sobic001G352800 Sobic001G352800 Sobic003G085500--Sobic001G352800 Sobic003G085500--Sobic010G002800 Sobic003G085500--Sobic004G354100 Sobic003G085500--Sobic007G022700 Sobic002G392400 Sobic002G392400 Sobic003G085500--Sobic002G392400 Sobic002G276800 Sobic002G276800 Sobic003G085500--Sobic002G276800 Sobic003G388700 Sobic003G388700 Sobic003G085500--Sobic003G388700 Sobic004G186100 Sobic004G186100 Sobic003G085500--Sobic004G186100 Sobic010G002800--Sobic001G352800 Sobic010G002800--Sobic003G085500 Sobic010G002800--Sobic003G388700 Sobic002G232400 Sobic002G232400 Sobic010G002800--Sobic002G232400 Sobic001G309200 Sobic001G309200 Sobic010G002800--Sobic001G309200 Sobic010G002800--Sobic004G186100 Sobic002G222200 Sobic002G222200 Sobic010G002800--Sobic002G222200 Sobic001G073600 Sobic001G073600 Sobic010G002800--Sobic001G073600 Sobic004G007700 Sobic004G007700 Sobic010G002800--Sobic004G007700 Sobic001G191900--Sobic006G106600 Sobic001G191900--Sobic001G229300 Sobic004G277400 Sobic004G277400 Sobic001G191900--Sobic004G277400 Sobic001G191900--Sobic002G153400 Sobic001G191900--Sobic007G022700 Sobic007G051400 Sobic007G051400 Sobic001G191900--Sobic007G051400 Sobic009G120400 Sobic009G120400 Sobic001G191900--Sobic009G120400 Sobic001G191900--Sobic004G354100 Sobic002G426100 Sobic002G426100 Sobic001G191900--Sobic002G426100 Sobic003G221500 Sobic003G221500 Sobic004G256300--Sobic003G221500 Sobic004G256300--Sobic003G222700 Sobic006G245700 Sobic006G245700 Sobic004G256300--Sobic006G245700 Sobic004G256300--Sobic007G022700 Sobic004G256300--Sobic001G229300 Sobic004G256300--Sobic002G142700 Sobic001G487100 Sobic001G487100 Sobic004G256300--Sobic001G487100 Sobic001G467100 Sobic001G467100 Sobic004G256300--Sobic001G467100 Sobic003G004600 Sobic003G004600 Sobic004G256300--Sobic003G004600 Sobic007G022700--Sobic004G256300 Sobic007G022700--Sobic003G222700 Sobic007G022700--Sobic003G085500 Sobic007G022700--Sobic002G232400 Sobic009G207200 Sobic009G207200 Sobic007G022700--Sobic009G207200 Sobic007G022700--Sobic004G186100 Sobic007G022700--Sobic001G191900 Sobic006G259900 Sobic006G259900 Sobic007G022700--Sobic006G259900 Sobic003G005900 Sobic003G005900 Sobic007G022700--Sobic003G005900 Sobic003G431600 Sobic003G431600 Sobic001G203500--Sobic003G431600 Sobic004G157500 Sobic004G157500 Sobic001G203500--Sobic004G157500 Sobic004G064600 Sobic004G064600 Sobic001G203500--Sobic004G064600 Sobic001G203500--Sobic004G354100 Sobic006G265600 Sobic006G265600 Sobic001G203500--Sobic006G265600 Sobic001G203500--Sobic002G426100 Sobic009G260700 Sobic009G260700 Sobic001G203500--Sobic009G260700 Sobic001G203500--Sobic001G191900 Sobic003G135500 Sobic003G135500 Sobic001G203500--Sobic003G135500 Sobic001G117900 Sobic001G117900 Sobic002G153400--Sobic001G117900 Sobic002G153400--Sobic001G352800 Sobic002G153400--Sobic001G485300 Sobic001G192700 Sobic001G192700 Sobic002G153400--Sobic001G192700 Sobic002G308000 Sobic002G308000 Sobic002G153400--Sobic002G308000 Sobic002G153400--Sobic001G191900 Sobic006G271000 Sobic006G271000 Sobic002G153400--Sobic006G271000 Sobic005G060100 Sobic005G060100 Sobic002G153400--Sobic005G060100 Sobic003G418400 Sobic003G418400 Sobic002G153400--Sobic003G418400 Sobic002G348400 Sobic002G348400 Sobic001G485300--Sobic002G348400 Sobic001G485300--Sobic003G085500 Sobic001G485300--Sobic002G276800 Sobic006G041800 Sobic006G041800 Sobic001G485300--Sobic006G041800 Sobic003G190600 Sobic003G190600 Sobic001G485300--Sobic003G190600 Sobic001G485300--Sobic002G392400 Sobic004G054700 Sobic004G054700 Sobic001G485300--Sobic004G054700 Sobic001G347700 Sobic001G347700 Sobic001G485300--Sobic001G347700 Sobic001G485300--Sobic001G352800
Octagon: transcription factors


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