Gene annotation
Transcriptome id Sobic.010G041100.1
Synonym Sb10g003630
Functional annotation mTERF family protein, expressed
UniProt C5Z4B2
Pfam PF02536
Panther DB PTHR13068 PTHR13068:SF17
NCBI CDD -
KEGG Orthology K15032; mTERF domain-containing protein, mitochondrial
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005739mitochondrion GO:0003690double-stranded DNA binding


Orthologs (automatic annotation)
TAIR AT1G21150 : Mitochondrial transcription termination factor family protein
RAP-DB (Rice) LOC_Os11g14130.1 : mTERF family protein, expressed
MaizeGDB (Corn) Zm00025a008824 , Zm00025a008814
Brachypodium -
Barley -
Wheat TraesCS2B02G093600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G229300 expressed protein -
2 Sobic.007G010200 - -
3 Sobic.004G354100 OsSigP5 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed K13280: SEC11, signal peptidase I
4 Sobic.004G277400 glucosyltransferase, putative, expressed K03849: alpha-1,3-glucosyltransferase
5 Sobic.008G098700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pumilio-family RNA binding repeat containing protein, expressed -
6 Sobic.002G322400 OsPDIL5-4 protein disulfide isomerase PDIL5-4, expressed -
7 Sobic.003G343200 outer membrane protein, OMP85 family protein, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
8 Sobic.002G239400 OsFBX338 - F-box domain containing protein, expressed -
9 Sobic.004G151200 RNA-binding protein-like, putative, expressed -
10 Sobic.001G288000 ankyrin repeat domain containing protein, putative, expressed -
11 Sobic.009G152120 - -
12 Sobic.010G002800 AGAP000326-PA, putative, expressed K18163: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6
13 Sobic.003G044000 lipase class 3 family protein, putative, expressed -
14 Sobic.009G239600 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
15 Sobic.006G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@microtubule associated protein, putative, expressed -
16 Sobic.002G299200 PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
17 Sobic.001G500500 expressed protein -
18 Sobic.003G027000 OsMADS3 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
19 Sobic.001G191900 mitochondrial carrier protein, putative, expressed K15109: SLC25A20_29, CACT, CACL, solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29
20 Sobic.009G152140 - -


Gene co-expression network
sample Sobic010G041100 Sobic010G041100 Sobic001G229300 Sobic001G229300 Sobic010G041100--Sobic001G229300 Sobic007G010200 Sobic007G010200 Sobic010G041100--Sobic007G010200 Sobic004G354100 Sobic004G354100 Sobic010G041100--Sobic004G354100 Sobic004G277400 Sobic004G277400 Sobic010G041100--Sobic004G277400 Sobic008G098700 Sobic008G098700 Sobic010G041100--Sobic008G098700 Sobic002G322400 Sobic002G322400 Sobic010G041100--Sobic002G322400 Sobic003G343200 Sobic003G343200 Sobic010G041100--Sobic003G343200 Sobic002G239400 Sobic002G239400 Sobic010G041100--Sobic002G239400 Sobic004G151200 Sobic004G151200 Sobic010G041100--Sobic004G151200 Sobic001G123600 Sobic001G123600 Sobic001G229300--Sobic001G123600 Sobic003G129300 Sobic003G129300 Sobic001G229300--Sobic003G129300 Sobic001G229300--Sobic004G354100 Sobic004G256300 Sobic004G256300 Sobic001G229300--Sobic004G256300 Sobic003G010900 Sobic003G010900 Sobic001G229300--Sobic003G010900 Sobic002G066800 Sobic002G066800 Sobic001G229300--Sobic002G066800 Sobic003G222700 Sobic003G222700 Sobic001G229300--Sobic003G222700 Sobic002G142700 Sobic002G142700 Sobic001G229300--Sobic002G142700 Sobic006G106600 Sobic006G106600 Sobic001G229300--Sobic006G106600 Sobic004G229000 Sobic004G229000 Sobic007G010200--Sobic004G229000 Sobic008G112100 Sobic008G112100 Sobic007G010200--Sobic008G112100 Sobic007G031100 Sobic007G031100 Sobic007G010200--Sobic007G031100 Sobic007G036800 Sobic007G036800 Sobic007G010200--Sobic007G036800 Sobic007G140100 Sobic007G140100 Sobic007G010200--Sobic007G140100 Sobic009G054400 Sobic009G054400 Sobic007G010200--Sobic009G054400 Sobic003G304800 Sobic003G304800 Sobic007G010200--Sobic003G304800 Sobic001G309200 Sobic001G309200 Sobic007G010200--Sobic001G309200 Sobic010G018900 Sobic010G018900 Sobic007G010200--Sobic010G018900 Sobic004G354100--Sobic001G229300 Sobic003G085500 Sobic003G085500 Sobic004G354100--Sobic003G085500 Sobic010G002800 Sobic010G002800 Sobic004G354100--Sobic010G002800 Sobic001G191900 Sobic001G191900 Sobic004G354100--Sobic001G191900 Sobic004G354100--Sobic004G256300 Sobic007G022700 Sobic007G022700 Sobic004G354100--Sobic007G022700 Sobic001G203500 Sobic001G203500 Sobic004G354100--Sobic001G203500 Sobic002G153400 Sobic002G153400 Sobic004G354100--Sobic002G153400 Sobic001G485300 Sobic001G485300 Sobic004G354100--Sobic001G485300 Sobic004G277400--Sobic004G151200 Sobic006G265600 Sobic006G265600 Sobic004G277400--Sobic006G265600 Sobic005G114500 Sobic005G114500 Sobic004G277400--Sobic005G114500 Sobic004G277400--Sobic001G191900 Sobic003G360300 Sobic003G360300 Sobic004G277400--Sobic003G360300 Sobic007G051400 Sobic007G051400 Sobic004G277400--Sobic007G051400 Sobic004G277400--Sobic003G222700 Sobic003G005900 Sobic003G005900 Sobic004G277400--Sobic003G005900 Sobic001G151600 Sobic001G151600 Sobic004G277400--Sobic001G151600 Sobic006G215800 Sobic006G215800 Sobic008G098700--Sobic006G215800 Sobic002G299200 Sobic002G299200 Sobic008G098700--Sobic002G299200 Sobic003G090000 Sobic003G090000 Sobic008G098700--Sobic003G090000 Sobic009G152120 Sobic009G152120 Sobic008G098700--Sobic009G152120 Sobic003G027000 Sobic003G027000 Sobic008G098700--Sobic003G027000 Sobic001G500500 Sobic001G500500 Sobic008G098700--Sobic001G500500 Sobic010G090700 Sobic010G090700 Sobic008G098700--Sobic010G090700 Sobic002G106200 Sobic002G106200 Sobic008G098700--Sobic002G106200 Sobic003G396500 Sobic003G396500 Sobic008G098700--Sobic003G396500 Sobic002G274700 Sobic002G274700 Sobic002G322400--Sobic002G274700 Sobic007G153500 Sobic007G153500 Sobic002G322400--Sobic007G153500 Sobic001G455000 Sobic001G455000 Sobic002G322400--Sobic001G455000 Sobic004G198300 Sobic004G198300 Sobic002G322400--Sobic004G198300 Sobic006G100266 Sobic006G100266 Sobic002G322400--Sobic006G100266 Sobic008G019532 Sobic008G019532 Sobic002G322400--Sobic008G019532 Sobic005G087300 Sobic005G087300 Sobic002G322400--Sobic005G087300 Sobic002G313100 Sobic002G313100 Sobic002G322400--Sobic002G313100 Sobic002G392400 Sobic002G392400 Sobic002G322400--Sobic002G392400 Sobic010G222800 Sobic010G222800 Sobic003G343200--Sobic010G222800 Sobic010G257500 Sobic010G257500 Sobic003G343200--Sobic010G257500 Sobic002G271400 Sobic002G271400 Sobic003G343200--Sobic002G271400 Sobic001G534400 Sobic001G534400 Sobic003G343200--Sobic001G534400 Sobic003G411700 Sobic003G411700 Sobic003G343200--Sobic003G411700 Sobic004G014100 Sobic004G014100 Sobic003G343200--Sobic004G014100 Sobic003G289700 Sobic003G289700 Sobic003G343200--Sobic003G289700 Sobic004G306100 Sobic004G306100 Sobic003G343200--Sobic004G306100 Sobic010G024000 Sobic010G024000 Sobic003G343200--Sobic010G024000 Sobic004G213400 Sobic004G213400 Sobic002G239400--Sobic004G213400 Sobic002G348400 Sobic002G348400 Sobic002G239400--Sobic002G348400 Sobic001G131900 Sobic001G131900 Sobic002G239400--Sobic001G131900 Sobic001G117900 Sobic001G117900 Sobic002G239400--Sobic001G117900 Sobic002G239400--Sobic002G392400 Sobic003G293400 Sobic003G293400 Sobic002G239400--Sobic003G293400 Sobic007G105700 Sobic007G105700 Sobic002G239400--Sobic007G105700 Sobic002G239400--Sobic009G054400 Sobic005G048600 Sobic005G048600 Sobic002G239400--Sobic005G048600 Sobic004G151200--Sobic001G455000 Sobic004G151200--Sobic004G277400 Sobic003G130900 Sobic003G130900 Sobic004G151200--Sobic003G130900 Sobic003G397900 Sobic003G397900 Sobic004G151200--Sobic003G397900 Sobic004G151200--Sobic003G005900 Sobic004G151200--Sobic001G151600 Sobic001G445500 Sobic001G445500 Sobic004G151200--Sobic001G445500 Sobic005G022100 Sobic005G022100 Sobic004G151200--Sobic005G022100 Sobic004G151200--Sobic006G265600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.